Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCAAAGTCTTTTTCTTCAAAGGGTTCTTTCTTTTTTCTTCTTTTTTATTTCTTCTTCTCGTTTCTAGACCCTTTCTCTTTAGAATTTGG GTAAGAATTTACTTGTTATTCATTTGATTTGTTAGATATATAATTTTATTTCCATTTTCACCTGGTCGTTACTTGTTTTGGGATTCAACCATTTGTATGTTCTTATTTCATTTATATTTTGTTAATTTCTTTTTACAATGTGTTGTTCAAGTCAGTTTTTTCAGCTACTTTATCGTTTCTTTCAATAATTAATCTACTGGTTTTGATATTTTACTTGTTTCCTTCGAAATTATTGTTAATTTGGCTGGTGTGTGTGTGTTATGCTGAAGGTGAAGTTGTAGAATTTTTGTTTTTCAATTATTGTAATTGGAAGAGCTTTGACTTCATGTCATCTGATGGTAAGAAGCTCAGAATTTGGGTTTTATTGAATTCATATGGGGAAAAGGTTGTTTGTGCTTCTGTTAGTAATCAAATTGTTAGGTTTTTGGAACTTAGCTCCAAATCTAATCATTTGAACTTTGGTGATTGATGGTTTTTGTATATCTAGCACAGTGCAAACCCTTTCTAGATGACATGTATATGCTTTGGTTCATTAATTTTGTTTCTCTGGATGTTTTGTATTTATGTCTTTCTTCTATAGATGTCAAGATTGATGTTTTCTCTTTCCCTCTTTCCATTTCTAGATATTGGGCTTAGCGATAGGCTGA mRNA sequence
ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCAAAGTCTTTTTCTTCAAAGGGTTCTTTCTTTTTTCTTCTTTTTTATTTCTTCTTCTCGTTTCTAGACCCTTTCTCTTTAGAATTTGGATATTGGGCTTAGCGATAGGCTGA Coding sequence (CDS)
ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCCCCCCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCAAAGTCTTTTTCTTCAAAGGGTTCTTTCTTTTTTCTTCTTTTTTATTTCTTCTTCTCGTTTCTAGACCCTTTCTCTTTAGAATTTGGATATTGGGCTTAGCGATAGGCTGA Protein sequence
MTTKPNHHGRHLTRSAGHIFISPPPRHPRATSSHFSPPNHFVGFQILFPKSFSSKGSFFFLLFYFFFSFLDPFSLEFGYWA*R*AX
Homology
BLAST of Chy4G078290 vs. ExPASy TrEMBL
Match:
A0A0A0LDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 46/84 (54.76%), Postives = 49/84 (58.33%), Query Frame = 0
Query: 1 MTTKPNHHGRHLTRSAGHIFISPPPRHPRATSSHFSPPNHFVGFQILFPKSFSSKGSFFF 60 MTTKPNHHGRHLTRSAGHIFISPPP P++ F F GF P+ F KG F Sbjct: 1 MTTKPNHHGRHLTRSAGHIFISPPP-SPKSYIFPFLTAESFCGFSDSIPQLFFFKG---F 60 Query: 61 LLFYFFFSFL----DPFSLEFGYW 81 LLF F FL PF FG W Sbjct: 61 LLFSSSFLFLLLLSTPFL--FGIW 78
BLAST of Chy4G078290 vs. NCBI nr
Match:
KGN58291.1 (hypothetical protein Csa_017580 [Cucumis sativus])
HSP 1 Score: 66.2 bits (160), Expect = 5.54e-12
Identity = 45/82 (54.88%), Postives = 48/82 (58.54%), Query Frame = 0
Query: 1 MTTKPNHHGRHLTRSAGHIFISPPPRHPRATSSHFSPPNHFVGFQILFPKSFSSKGSFFF 60 MTTKPNHHGRHLTRSAGHIFISPPP P++ F F GF P+ F KG F Sbjct: 1 MTTKPNHHGRHLTRSAGHIFISPPPS-PKSYIFPFLTAESFCGFSDSIPQLFFFKG---F 60 Query: 61 LLFYFFFSFLDPFSLEF--GYW 80 LLF F FL S F G W Sbjct: 61 LLFSSSFLFLLLLSTPFLFGIW 78
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0LDX1 1.3e-07 54.76 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1 [more]
Match Name E-value Identity Description
KGN58291.1 5.54e-12 54.88 hypothetical protein Csa_017580 [Cucumis sativus] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
A T G A C G A C A A A G C C G A A C C A T C A C G G C C G T C A C C T C A C C C G C T C T G C C G G T C A C A T A T T T A T A T C C C C C C C C C C C C G T C A C C C A A G A G C T A C A T C T T C C C A T T T C T C A C C G C C G A A T C A T T T T G T G G G T T T T C A G A T T C T A T T C C C A A A G T C T T T T T C T T C A A A G G G T T C T T T C T T T T T T C T T C T T T T T T A T T T C T T C T T C T C G T T T C T A G A C C C T T T C T C T T T A G A A T T T G G A T A T T G G G C T T A G C G A T A G G C T G A 20 40 60 80 100 120 140 160 180 200 220 240 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..34
Relationships
The following mRNA feature(s) are a part of this gene: