Chy4G078150 (gene) Cucumber (hystrix) v1

Overview
NameChy4G078150
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationchrH04: 16929365 .. 16929544 (+)
RNA-Seq ExpressionChy4G078150
SyntenyChy4G078150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTCATCCACAAATGTCTACTGTGGTTACATCCTCAGATCTAAACTTGGATAGCGATTGGTATCCTGATTTGAGAGCCACAAATCATCTTACTCATAGTCTGAATAACCTATCTACTGAATTTGAGTATGGTAGAGGAAATCATATCTATCCAGCAAATGGGTCAAATTTGTAA

mRNA sequence

ATGTTTGGTCATCCACAAATGTCTACTGTGGTTACATCCTCAGATCTAAACTTGGATAGCGATTGGTATCCTGATTTGAGAGCCACAAATCATCTTACTCATAGTCTGAATAACCTATCTACTGAATTTGAGTATGGTAGAGGAAATCATATCTATCCAGCAAATGGGTCAAATTTGTAA

Coding sequence (CDS)

ATGTTTGGTCATCCACAAATGTCTACTGTGGTTACATCCTCAGATCTAAACTTGGATAGCGATTGGTATCCTGATTTGAGAGCCACAAATCATCTTACTCATAGTCTGAATAACCTATCTACTGAATTTGAGTATGGTAGAGGAAATCATATCTATCCAGCAAATGGGTCAAATTTGTAA

Protein sequence

MFGHPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL*
Homology
[Close]
BLAST of Chy4G078150 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1   MFGHPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 60
           M  HPQMS +V + DLN+DS+WYPD  ATNHLTHSL+NLS   EYG GN IY ANGS L
Sbjct: 327 MNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGL 385

[Close]
BLAST of Chy4G078150 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1   MFGHPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 60
           M  HPQMS +V + DLN+DS+WYPD  ATNHLTHSL+NLS   EYG GN IY ANGS L
Sbjct: 327 MNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGL 385

[Close]
BLAST of Chy4G078150 vs. ExPASy TrEMBL
Match: A0A5D3DDT9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00070 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.1e-13
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 4   HPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 60
           +PQMS +VT  DLN +S+WYPD  A+NHLTHSL+NLST  EYGRG+ IY ANGS+L
Sbjct: 201 NPQMSAMVTFYDLNFNSNWYPDSGASNHLTHSLSNLSTGSEYGRGHQIYAANGSDL 256

[Close]
BLAST of Chy4G078150 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 6  QMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 60
          QMS +V + DLN+DS+WYPD  ATNHLTHSL+NLST  EYG GN IY ANGS L
Sbjct: 41 QMSAMVATPDLNIDSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGSGL 94

[Close]
BLAST of Chy4G078150 vs. ExPASy TrEMBL
Match: A0A5A7T077 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00410 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 4   HPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSN 59
           +PQMS +V S DLN+DS+WYP+L ATNHL H+L+NLST  EYG G+HIY  NGS+
Sbjct: 144 NPQMSAMVASYDLNVDSNWYPNLGATNHLIHNLSNLSTRSEYGGGHHIYAPNGSD 198

[Close]
BLAST of Chy4G078150 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 4.02e-17
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1   MFGHPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 59
           M  HPQMS +V + DLN+DS+WYPD  ATNHLTHSL+NLS   EYG GN IY ANGS L
Sbjct: 327 MNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGL 385

[Close]
BLAST of Chy4G078150 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 4.02e-17
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1   MFGHPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 59
           M  HPQMS +V + DLN+DS+WYPD  ATNHLTHSL+NLS   EYG GN IY ANGS L
Sbjct: 327 MNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIGSEYGGGNQIYAANGSGL 385

[Close]
BLAST of Chy4G078150 vs. NCBI nr
Match: KAA0059137.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK21610.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 4.55e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 4   HPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGSNL 59
           +PQMS +VT  DLN +S+WYPD  A+NHLTHSL+NLST  EYGRG+ IY ANGS+L
Sbjct: 201 NPQMSAMVTFYDLNFNSNWYPDSGASNHLTHSLSNLSTGSEYGRGHQIYAANGSDL 256

[Close]
BLAST of Chy4G078150 vs. NCBI nr
Match: TYK18916.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 5.34e-16
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 6  QMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGS 57
          QMS +V + DLN+DS+WY D  ATNHLTHSL+NLST  EYG GN IY ANGS
Sbjct: 41 QMSAMVATPDLNIDSNWYTDSGATNHLTHSLSNLSTGSEYGGGNQIYAANGS 92

[Close]
BLAST of Chy4G078150 vs. NCBI nr
Match: KAA0059802.1 (heterogeneous nuclear ribonucleoprotein A1-like 2 [Cucumis melo var. makuwa] >TYK05833.1 heterogeneous nuclear ribonucleoprotein A1-like 2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 5.92e-16
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 4  HPQMSTVVTSSDLNLDSDWYPDLRATNHLTHSLNNLSTEFEYGRGNHIYPANGS 57
          +PQM  +V S DLN+DS+WYPD  ATNHLTH L+NLS   EYG G+ IY ANGS
Sbjct: 42 NPQMGAMVASYDLNVDSNWYPDSGATNHLTHGLSNLSIGSEYGEGHQIYTANGS 95

The following BLAST results are available for this feature:
BLAST of Chy4G078150 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G078150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U2336.3e-1467.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CH976.3e-1467.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DDT99.1e-1367.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7VFQ61.2e-1270.37Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5A7T0772.7e-1265.45Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
BLAST of Chy4G078150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048297.14.02e-1767.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK10642.14.02e-1767.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0059137.14.55e-1667.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK18916.15.34e-1669.23retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa][more]
KAA0059802.15.92e-1664.81heterogeneous nuclear ribonucleoprotein A1-like 2 [Cucumis melo var. makuwa] >TY... [more]
BLAST of Chy4G078150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G078150.1Chy4G078150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding