Chy4G077670 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G077670
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Protein FAR1-RELATED SEQUENCE 4-like
Location	chrH04: 15484642 .. 15485115 (-)
RNA-Seq Expression	Chy4G077670
Synteny	Chy4G077670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACCGACCGCTCCATTCCAAAAGCGATGATCCATAAGGCTCATACAAACCTTGGAGTTAATATAAGTTATCGAAAAGCTTGGAGTGCAAAAGAACACATAATAAAGATATTAAAAGGTGACACAGTTGAATCGTACACGTTGATTCCAAGCTTCTTTGATAAATTGGTTGAATCTAACCTAGGTATGATCAACTTTCTATATCAATTTTACATTCATTTTCAGATAGATGGGGATAGACAAATATCACAGTCTATCTTAGATAAATAAATATTAACATTTATAACACTCTATCTATTCCCTTTTGTTAGTGCTGATAGAAATGTTTTGTATTATTTTATAGGTACATGCACTGCCTCAGAGATTGATGATAGTGATCATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAAGGGTGAAAATGTTGTAGACCTATTATTTCTGTTGATGACACGTTTTTGAAG

mRNA sequence

ATGCCTACCGACCGCTCCATTCCAAAAGCGATGATCCATAAGGCTCATACAAACCTTGGAGTTAATATAAGTTATCGAAAAGCTTGGAGTGCAAAAGAACACATAATAAAGATATTAAAAGGTGACACAGTTGAATCGTACACGTTGATTCCAAGCTTCTTTGATAAATTGGTTGAATCTAACCTAGATTGATGATAGTGATCATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAAGGGTGAAAATGTTGTAGACCTATTATTTCTGTTGATGACACGTTTTTGAAG

Coding sequence (CDS)

ATGCCTACCGACCGCTCCATTCCAAAAGCGATGATCCATAAGGCTCATACAAACCTTGGAGTTAATATAAGTTATCGAAAAGCTTGGAGTGCAAAAGAACACATAATAAAGATATTAAAAGGTGACACAGTTGAATCGTACACGTTGATTCCAAGCTTCTTTGATAAATTGGTTGAATCTAACCTAGATTGATGATAGTGATCATTTCAAGTTTTGCTTTATGACTTTTGGTGCATCAATTGAAGGGTGAAAATGTTGTAGACCTATTATTTCTGTTGATGACACGTTTTTGAAG

Protein sequence

MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVESNLD****SFQVLLYDFWCIN*RVKML*TYYFC**HVFEX

Homology

[Close]

BLAST of Chy4G077670 vs. ExPASy TrEMBL
Match: A0A5A7T2U4 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001730 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.0e-21
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK ++HKAHTNLGVNISY+KAW AKEH++KIL GD VESYTLIP FFDKLVES
Sbjct: 19 MSTDRSIPKEIVHKAHTNLGVNISYQKAWRAKEHMVKILHGDIVESYTLIPRFFDKLVES 78

Query: 61 N 62
          N
Sbjct: 79 N 79

[Close]

BLAST of Chy4G077670 vs. ExPASy TrEMBL
Match: A0A5A7VAF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001540 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.7e-20
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
           M TDRSIPK ++HKA TNLGVNISY+KAW  KEH++KIL GDTVESY LIP FFDKLVES
Sbjct: 657 MSTDRSIPKEIVHKARTNLGVNISYQKAWRVKEHMVKILHGDTVESYALIPRFFDKLVES 716

Query: 61  N 62
           N
Sbjct: 717 N 717

[Close]

BLAST of Chy4G077670 vs. ExPASy TrEMBL
Match: A0A5D3C8V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00040 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.7e-20
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK ++HKAHTNLG NISY+KAW AKEH++KIL  DT+ESY LIP FFDKLVES
Sbjct: 19 MSTDRSIPKEIVHKAHTNLGGNISYQKAWRAKEHMVKILHSDTIESYALIPRFFDKLVES 78

Query: 61 N 62
          N
Sbjct: 79 N 79

[Close]

BLAST of Chy4G077670 vs. ExPASy TrEMBL
Match: A0A5D3BZ76 (Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001160 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK ++HKAHTNLGVNISY+KAW  KEH++KIL  D VESY LIP FFDKLVES
Sbjct: 19 MSTDRSIPKEIVHKAHTNLGVNISYQKAWRVKEHMVKILHDDKVESYALIPRFFDKLVES 78

Query: 61 N 62
          N
Sbjct: 79 N 79

[Close]

BLAST of Chy4G077670 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.8e-19
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK ++HKA TNLGV+ISY+K W AKEH++KIL GD VESYTLIP FFDKLVES
Sbjct: 19 MSTDRSIPKEIVHKARTNLGVSISYQKVWRAKEHMVKILHGDIVESYTLIPRFFDKLVES 78

Query: 61 N 62
          N
Sbjct: 79 N 79

[Close]

BLAST of Chy4G077670 vs. NCBI nr
Match: KAA0041732.1 (uncharacterized protein E6C27_scaffold67G00700 [Cucumis melo var. makuwa] >TYK08397.1 uncharacterized protein E5676_scaffold654G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 6.44e-27
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK ++HKAHTNLG NISY+KAW AKEH++KIL  DT+ESY LIP FFDKLVES
Sbjct: 19 MSTDRSIPKEIVHKAHTNLGGNISYQKAWRAKEHMVKILHSDTIESYALIPRFFDKLVES 78

[Close]

BLAST of Chy4G077670 vs. NCBI nr
Match: KAA0037108.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK13969.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 1.30e-26
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK ++HKAHTNLGVNISY+KAW AKEH++KIL GD VESYTLIP FFDKLVES
Sbjct: 19 MSTDRSIPKEIVHKAHTNLGVNISYQKAWRAKEHMVKILHGDIVESYTLIPRFFDKLVES 78

[Close]

BLAST of Chy4G077670 vs. NCBI nr
Match: KAA0052073.1 (uncharacterized protein E6C27_scaffold578G00430 [Cucumis melo var. makuwa] >TYK00687.1 uncharacterized protein E5676_scaffold1371G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 2.15e-26
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 3  TDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVESN 61
          TDRSIP+ ++HKA TNLGVNISY+KAW AKEH++KIL GDTVE+Y LIP FFDKLVESN
Sbjct: 21 TDRSIPQEIVHKARTNLGVNISYQKAWRAKEHMVKILHGDTVEAYALIPRFFDKLVESN 79

[Close]

BLAST of Chy4G077670 vs. NCBI nr
Match: KAA0068086.1 (uncharacterized protein E6C27_scaffold238G00380 [Cucumis melo var. makuwa] >TYK26070.1 uncharacterized protein E5676_scaffold1185G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 2.59e-26
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDRSIPK + HKA TN GVNISY+KAW AKE+++K+L GDTVESY LIP FFDKLVES
Sbjct: 1  MSTDRSIPKEIAHKARTNFGVNISYQKAWRAKEYMVKLLHGDTVESYALIPIFFDKLVES 60

Query: 61 NL 62
          NL
Sbjct: 61 NL 62

[Close]

BLAST of Chy4G077670 vs. NCBI nr
Match: TYK31656.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 6.15e-26
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MPTDRSIPKAMIHKAHTNLGVNISYRKAWSAKEHIIKILKGDTVESYTLIPSFFDKLVES 60
          M TDR IPK ++HKA TNLGVNISY+KAW AKE ++KIL GDTVESY LIP FFDKLVES
Sbjct: 19 MSTDRFIPKEIVHKARTNLGVNISYQKAWRAKERMVKILHGDTVESYALIPRFFDKLVES 78

The following BLAST results are available for this feature:

BLAST of Chy4G077670 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G077670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2U4	3.0e-21	81.97	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VAF9	5.7e-20	78.69	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3C8V1	9.7e-20	77.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BZ76	2.2e-19	77.05	Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C7L7	2.8e-19	77.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy4G077670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041732.1	6.44e-27	77.05	uncharacterized protein E6C27_scaffold67G00700 [Cucumis melo var. makuwa] >TYK08...	[more]
KAA0037108.1	1.30e-26	81.97	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK13969.1 prot...	[more]
KAA0052073.1	2.15e-26	77.97	uncharacterized protein E6C27_scaffold578G00430 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0068086.1	2.59e-26	75.81	uncharacterized protein E6C27_scaffold238G00380 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK31656.1	6.15e-26	77.05	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]

BLAST of Chy4G077670 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G077670.1	Chy4G077670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding