Chy4G077470 (gene) Cucumber (hystrix) v1

Overview
NameChy4G077470
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
LocationchrH04: 15290585 .. 15293146 (-)
RNA-Seq ExpressionChy4G077470
SyntenyChy4G077470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAAATCGTTCTTTCTTAATCTATCTGCCTTGAGTTTATTTACTTTACCAATCATGTATTTGCGTTATGTATATTGCTCCCTTTCTGTTCTAAAACTGCTAACGTTATTTTGATTTATGGTTTCATTCCTGCCAATTTTTTTGGAGTCTGTGGAATTTCATTTTTCCTGTTCTCTTTTGGCCCTATTTTAGCTCTCTAGTAATTGAGAAATGCTTAGTTATCTTTTTTTTTTTAATAAATATTTTCTAACCTTCGATTGTCAATTTTATGGTATCTTTTTAGTTAGTGTTAAGGCATTTTTTATTTTTTATGCCTCTCCTTGTTCTTTGCCTTTAATTTGCTTCACCTCTTGGATTTGAATTGTTTAGATGCATCCGTATATTTCTAGATGGGAAAGTTTAGTAATTGGTAGAATAGTAAGTATTGTGAGTACAATCTATGCTTGACTTGACCTAATGAGGTGGCTATCCCTGCTCTTTGGACGTTGCCCTCCTCTACGTTTATCTTTTTCAATGATCGATTCTTGGAAGCTGGAATTGAAATTTGGCTAATGTGTTTGTTGAGCTGTGTTTCTGTTTCTTTTCAAGTAGAGAAATTGTTCTGGCTTTTAATACAGAATTTTCAAGTTTTATTGTGTTTCTGAAATTAATGAACTCTGTTTGTGAAGCATGTAATTGTTGATGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGGTCTGTCCATTCGCTTTGCTTATGTTTGATTTGTGCTTAGACCTGAATTTTTTCCGTCTTTGACCTGTTGTTTTCTGTTCTGTTTGTAGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCGGTTTTCTCATTTGAGACGTTGAAGTTTATTTGGTGTATGTAGTGTTAATCCACATTTACACAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCAGAGGGGCTAAGGTCGTTGACTACCCTTCTAATAGACAACTAAGAAATGAGAAAGAAAATAAATAAGAATTTGACTTCAATTTGTTAATTGGCGTATCACAGAATAAATATAAGATTCCTGAATATGGTGTGTGGTGTTATGTTATCCACATATGCGTACAAGATAGTATTCTAGAATTTGATTGGCAACATAGAGAACATATCCTTACAGCACTCAGCTGTTGATTATGATTCATGCTTTGCAATCTTTTGGATCTTATGGTACCTGGCTCGGCTGATAAATCTGCTGGTTACATGGGAGTGCAGTTTCTCCTTTATTCTCCTGTGCAATGGTGTTTGCTTTATGTAGTCCTTTCAGACAATAATTATTTTTGGTAATTCATTGATTTATTTGTAGGGTTTTCTGCTATAATTTGAATCCTTTCATTTGAGCAACATGGTGGTGAGAGTATTTTTTTTTCATTACCTTTTTCTTGGTGGGGCATTGAGCATTTAGTCGGGTTCATTTTTCCTTTTGCTGTTGCATTGTAATGGATGTTTAAGTTTAACTGCTTAAACTGGGCTGGTTAGTGGTCAGTCACGAATATAAGAAAATGAACACGTGACTTTACAATGTCGAAGAAAAACATTAACTATTAGACTTTAACAATTCTTTGAATCTTCTAAAGGGTATCACTTTCTTGGAAACATTATTGTTACTATTATCATCAAGTTTTAAAATGATTGCCAATATGTGGCTAAATGGTTGGTTGGTGAATCTTTTATAGAAAGTACAATCTTGACAATGCAAAATGGTTGTATTGAACAAATCGATCTAGGTTTCTTTTAAATCGATTTTGTCAAACTTTCCTAGAACTTCCCTTGGTTTGCTTCATTGTCATTTTTGACATTTCAGTAGAATACTCCTGTTCTTAGCCTCGTTCAAATTGATTTGATTTCATGTGTTTTACCTCTCTGATCTTCAATTAAAACATTTACTCTGATGAACTTTACAAATTAGAATGCCCGAAAATAATATTTATGAAACTGGGTTGATGCTTGCTTTTGAACACGTGTTGAAATTTGTTTATTTATAATTGAATGATGATGAGTCTCTTTTTGTTTTCCCTCTTAATGTTCTCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA

mRNA sequence

ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA

Protein sequence

MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD*
Homology
BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.5e-39
Identity = 91/150 (60.67%), Postives = 103/150 (68.67%), Query Frame = 0

Query: 26  LPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSG 85
           LP IS+A+ +      S    L     S+AS  SF+ P        R  AEPSTNLFVSG
Sbjct: 7   LPAISRAVTE----VASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSG 66

Query: 86  LSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFL 145
           LSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKFL
Sbjct: 67  LSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 126

Query: 146 DGWVIFAEYARPRP-----PPENNNGFAPY 171
           DGWVIFAEYARPR       P+NN    PY
Sbjct: 127 DGWVIFAEYARPREQSQSYQPQNNMSRPPY 152

BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0

Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 70  QQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYAT 129
           Q+R VA   + LF+ GLS  TT + L EAF+K G+VV A++V DRV+  SKGFGFV +A+
Sbjct: 28  QRRGVA---SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 87

Query: 130 LEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 168
            ++A K +   +G+ L+G  IF +YA+ +       G+
Sbjct: 88  ADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGY 122

BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 0

Query: 75  AEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAA 134
           A+     FV GL+  T  E L +AFA FG+V+ ++V+TDR TG S+GFGFV +++ +   
Sbjct: 4   ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63

Query: 135 KGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYG 172
             IE M+GK LDG  I    A+ R       G+   G
Sbjct: 64  DAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGG 100

BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 169/174 (97.13%), Postives = 169/174 (97.13%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLRKLIT TSTRTLPIISQAIHDWEKPEPS   FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 174

BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86
Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86
Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172

BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.0e-77
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TS RTLP+  QAIHD EKP P+ NAF+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE  EPSTNLFVSGLSKRTTTEKLHE FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE +N   PYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-HNAVPPYGRQ 172

BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A6J1FB41 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111443707 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.6e-76
Identity = 153/173 (88.44%), Postives = 159/173 (91.91%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKP-EPSPNAFLSGRLFSSASTSS 60
           MALRSAAA+APRSLR+LIT TS RTLPI  QAIHD EKP  P+ NAF+SGRLFSSASTSS
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPIFLQAIHDCEKPTPPNTNAFVSGRLFSSASTSS 60

Query: 61  FIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYS 120
           FIPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYS
Sbjct: 61  FIPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYS 120

Query: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 173
           KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE +N   PYGR
Sbjct: 121 KGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-HNAVPPYGR 172

BLAST of Chy4G077470 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 333 bits (854), Expect = 6.33e-115
Identity = 169/174 (97.13%), Postives = 169/174 (97.13%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLRKLIT TSTRTLPIISQAIHDWEKPEPS   FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 174

BLAST of Chy4G077470 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 325 bits (833), Expect = 9.74e-112
Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

BLAST of Chy4G077470 vs. NCBI nr
Match: KAA0063485.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (832), Expect = 4.38e-111
Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PS N+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 172

BLAST of Chy4G077470 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 311 bits (797), Expect = 2.90e-106
Identity = 160/173 (92.49%), Postives = 164/173 (94.80%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TSTRTLPIISQ IHDWEK EPS NAFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENN GF P+G +
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENN-GFRPHGHQ 172

BLAST of Chy4G077470 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 293 bits (751), Expect = 2.98e-99
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0

Query: 1   MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TS RTLP+  QAIHD EKP P+ NAF+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE  EPSTNLFVSGLSKRTTTEKLHE FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 173
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE+N    PYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHN-AVPPYGRQ 172

BLAST of Chy4G077470 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-40
Identity = 91/150 (60.67%), Postives = 103/150 (68.67%), Query Frame = 0

Query: 26  LPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSG 85
           LP IS+A+ +      S    L     S+AS  SF+ P        R  AEPSTNLFVSG
Sbjct: 7   LPAISRAVTE----VASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSG 66

Query: 86  LSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFL 145
           LSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKFL
Sbjct: 67  LSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 126

Query: 146 DGWVIFAEYARPRP-----PPENNNGFAPY 171
           DGWVIFAEYARPR       P+NN    PY
Sbjct: 127 DGWVIFAEYARPREQSQSYQPQNNMSRPPY 152

BLAST of Chy4G077470 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25
Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 0

Query: 45  AFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGE 104
           AF+S      A +SS +    P    +R     S  LFVSGLS+ TT EKL +AFA FG+
Sbjct: 2   AFVSSFRRLVAGSSSLLSS--PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQ 61

Query: 105 VVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 161
           +V ARV+TDR +G SKGFGFV YAT+EDA K    M+ KFLDGWVIF + ARPR P
Sbjct: 62  LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115

BLAST of Chy4G077470 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-19
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0

Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

BLAST of Chy4G077470 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0

Query: 70  QQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYAT 129
           Q+R VA   + LF+ GLS  TT + L EAF+K G+VV A++V DRV+  SKGFGFV +A+
Sbjct: 28  QRRGVA---SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 87

Query: 130 LEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 168
            ++A K +   +G+ L+G  IF +YA+ +       G+
Sbjct: 88  ADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGY 122

BLAST of Chy4G077470 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-14
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FIU62.5e-3960.67Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana... [more]
Q9FX452.4e-1846.90Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana... [more]
Q9FFZ64.7e-1442.86Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S... [more]
Q9FNR13.0e-1342.39Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q990701.2e-1240.21Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LD101.0e-8897.13RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV... [more]
A0A1S3C0662.8e-8694.22glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A5D3DR243.6e-8694.77Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1INZ49.0e-7787.28organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim... [more]
A0A6J1FB417.6e-7688.44organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch... [more]
Match NameE-valueIdentityDescription
XP_004151968.16.33e-11597.13organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5... [more]
XP_008454580.19.74e-11294.22PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo][more]
KAA0063485.14.38e-11194.77glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycin... [more]
XP_038896843.12.90e-10692.49organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida][more]
XP_022976594.12.98e-9987.28organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G54580.11.7e-4060.67RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G37510.14.6e-2554.31RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G73530.11.7e-1946.90RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G06210.13.3e-1542.86RNA binding (RRM/RBD/RNP motifs) family protein [more]
AT5G61030.12.2e-1442.39glycine-rich RNA-binding protein 3 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 80..153
e-value: 2.6E-24
score: 96.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 81..147
e-value: 7.0E-20
score: 70.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 79..157
score: 18.444448
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 66..174
e-value: 9.1E-29
score: 102.3
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 50..164
NoneNo IPR availablePANTHERPTHR15241:SF280GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKEcoord: 50..164
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 60..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G077470.1Chy4G077470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0080156 mitochondrial mRNA modification
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding