Chy4G077470 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAAATCGTTCTTTCTTAATCTATCTGCCTTGAGTTTATTTACTTTACCAATCATGTATTTGCGTTATGTATATTGCTCCCTTTCTGTTCTAAAACTGCTAACGTTATTTTGATTTATGGTTTCATTCCTGCCAATTTTTTTGGAGTCTGTGGAATTTCATTTTTCCTGTTCTCTTTTGGCCCTATTTTAGCTCTCTAGTAATTGAGAAATGCTTAGTTATCTTTTTTTTTTTAATAAATATTTTCTAACCTTCGATTGTCAATTTTATGGTATCTTTTTAGTTAGTGTTAAGGCATTTTTTATTTTTTATGCCTCTCCTTGTTCTTTGCCTTTAATTTGCTTCACCTCTTGGATTTGAATTGTTTAGATGCATCCGTATATTTCTAGATGGGAAAGTTTAGTAATTGGTAGAATAGTAAGTATTGTGAGTACAATCTATGCTTGACTTGACCTAATGAGGTGGCTATCCCTGCTCTTTGGACGTTGCCCTCCTCTACGTTTATCTTTTTCAATGATCGATTCTTGGAAGCTGGAATTGAAATTTGGCTAATGTGTTTGTTGAGCTGTGTTTCTGTTTCTTTTCAAGTAGAGAAATTGTTCTGGCTTTTAATACAGAATTTTCAAGTTTTATTGTGTTTCTGAAATTAATGAACTCTGTTTGTGAAGCATGTAATTGTTGATGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGGTCTGTCCATTCGCTTTGCTTATGTTTGATTTGTGCTTAGACCTGAATTTTTTCCGTCTTTGACCTGTTGTTTTCTGTTCTGTTTGTAGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCGGTTTTCTCATTTGAGACGTTGAAGTTTATTTGGTGTATGTAGTGTTAATCCACATTTACACAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCAGAGGGGCTAAGGTCGTTGACTACCCTTCTAATAGACAACTAAGAAATGAGAAAGAAAATAAATAAGAATTTGACTTCAATTTGTTAATTGGCGTATCACAGAATAAATATAAGATTCCTGAATATGGTGTGTGGTGTTATGTTATCCACATATGCGTACAAGATAGTATTCTAGAATTTGATTGGCAACATAGAGAACATATCCTTACAGCACTCAGCTGTTGATTATGATTCATGCTTTGCAATCTTTTGGATCTTATGGTACCTGGCTCGGCTGATAAATCTGCTGGTTACATGGGAGTGCAGTTTCTCCTTTATTCTCCTGTGCAATGGTGTTTGCTTTATGTAGTCCTTTCAGACAATAATTATTTTTGGTAATTCATTGATTTATTTGTAGGGTTTTCTGCTATAATTTGAATCCTTTCATTTGAGCAACATGGTGGTGAGAGTATTTTTTTTTCATTACCTTTTTCTTGGTGGGGCATTGAGCATTTAGTCGGGTTCATTTTTCCTTTTGCTGTTGCATTGTAATGGATGTTTAAGTTTAACTGCTTAAACTGGGCTGGTTAGTGGTCAGTCACGAATATAAGAAAATGAACACGTGACTTTACAATGTCGAAGAAAAACATTAACTATTAGACTTTAACAATTCTTTGAATCTTCTAAAGGGTATCACTTTCTTGGAAACATTATTGTTACTATTATCATCAAGTTTTAAAATGATTGCCAATATGTGGCTAAATGGTTGGTTGGTGAATCTTTTATAGAAAGTACAATCTTGACAATGCAAAATGGTTGTATTGAACAAATCGATCTAGGTTTCTTTTAAATCGATTTTGTCAAACTTTCCTAGAACTTCCCTTGGTTTGCTTCATTGTCATTTTTGACATTTCAGTAGAATACTCCTGTTCTTAGCCTCGTTCAAATTGATTTGATTTCATGTGTTTTACCTCTCTGATCTTCAATTAAAACATTTACTCTGATGAACTTTACAAATTAGAATGCCCGAAAATAATATTTATGAAACTGGGTTGATGCTTGCTTTTGAACACGTGTTGAAATTTGTTTATTTATAATTGAATGATGATGAGTCTCTTTTTGTTTTCCCTCTTAATGTTCTCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACATGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCCCCAATGCTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAACTTCATGAGGCCTTTGCGAAGTTTGGAGAAGTTGTTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA MALRSAAASAPRSLRKLITCTSTRTLPIISQAIHDWEKPEPSPNAFLSGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD* Homology
BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.5e-39 Identity = 91/150 (60.67%), Postives = 103/150 (68.67%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18 Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 4.7e-14 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12 Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88 Identity = 169/174 (97.13%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86 Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 3.6e-86 Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 9.0e-77 Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0
BLAST of Chy4G077470 vs. ExPASy TrEMBL
Match: A0A6J1FB41 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111443707 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 7.6e-76 Identity = 153/173 (88.44%), Postives = 159/173 (91.91%), Query Frame = 0
BLAST of Chy4G077470 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus]) HSP 1 Score: 333 bits (854), Expect = 6.33e-115 Identity = 169/174 (97.13%), Postives = 169/174 (97.13%), Query Frame = 0
BLAST of Chy4G077470 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]) HSP 1 Score: 325 bits (833), Expect = 9.74e-112 Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 0
BLAST of Chy4G077470 vs. NCBI nr
Match: KAA0063485.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]) HSP 1 Score: 325 bits (832), Expect = 4.38e-111 Identity = 163/172 (94.77%), Postives = 167/172 (97.09%), Query Frame = 0
BLAST of Chy4G077470 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]) HSP 1 Score: 311 bits (797), Expect = 2.90e-106 Identity = 160/173 (92.49%), Postives = 164/173 (94.80%), Query Frame = 0
BLAST of Chy4G077470 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 293 bits (751), Expect = 2.98e-99 Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0
BLAST of Chy4G077470 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 163.3 bits (412), Expect = 1.7e-40 Identity = 91/150 (60.67%), Postives = 103/150 (68.67%), Query Frame = 0
BLAST of Chy4G077470 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 112.1 bits (279), Expect = 4.6e-25 Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 0
BLAST of Chy4G077470 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 93.6 bits (231), Expect = 1.7e-19 Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0
BLAST of Chy4G077470 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15 Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 0
BLAST of Chy4G077470 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 ) HSP 1 Score: 76.6 bits (187), Expect = 2.2e-14 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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