Chy4G076870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G076870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chrH04: 14200740 .. 14201384 (-)
RNA-Seq Expression	Chy4G076870
Synteny	Chy4G076870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTAGAAGCACATTCAGTTAACCTGAATGCGATGATGGAACAAGAAGAAGCAGTATATGATAGAGTGACACAGAGACTAGTTGATGTTATGGCGCATCAACCAGAGAAAAAGTTTGGAACAGAGAGATTGAAGACAGTAAGAGCTACTGAGTTCATTGGAACAACCAAACCAGAAGAAGTTGAAAAGTGGATTAGGACTTTGGAAAAATGCTTCTGTATAATGCAATGTTCCGAGGAGAGAAAAGTAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGAATTTTGGTAGAGAATAGGCGAGGAGATGTTTACTAGGAAGAATTCAAAGAAATCTTTAACAACAAATACTGCTCAAAGGCTTACAAGTCATTATTCTCCCGACGTCGGAGTGCATCGAGGAAGGTTATAGAAGACATCATAACTATTCTCGATGCACCTGGTGCAACACGTCGGGAATGCCTTTTCCCCGATGTTCATTATGCCAACAACATAACAACATCAGGGACGTGTGGCTCTTCGGACTCACAACTTAACGCCAAGAGAAGTGTTTTCCTGACGTGGCATCATGCGAGCTTTCCCCGATGCATACAAAATGGCATCGGGGAAAGGCTTATTTCCCTACTCAAACAG

mRNA sequence

ATGAACTTAGAAGCACATTCAGTTAACCTGAATGCGATGATGGAACAAGAAGAAGCAGTATATGATAGAGTGACACAGAGACTAGTTGATGTTATGGCGCATCAACCAGAGAAAAAGTTTGGAACAGAGAGATTGAAGACAGTAAGAGCTACTGAGTTCATTGGAACAACCAAACCAGAAGAAGTTGAAAAGTGGATTAGGACTTTGGAAAAATGCTTCTAGAATAGGCGAGGAGATGTTTACTAGGAAGAATTCAAAGAAATCTTTAACAACAAATACTGCTCAAAGGCTTACAAGTCATTATTCTCCCGACGTCGGATATTCTCGATGCACCTGGTGCAACACGTCGGGAATGCCTTTTCCCCGATGTTCATTATGCCAACAACATAACAACATCAGGGACGTGTGGCTCTTCGGACTCACAACTTAACGCCAAGAGAAGTGTTTTCCTGACGTGGCATCATGCGAGCTTTCCCCGATGCATACAAAATGGCATCGGGGAAAGGCTTATTTCCCTACTCAAACAG

Coding sequence (CDS)

ATGAACTTAGAAGCACATTCAGTTAACCTGAATGCGATGATGGAACAAGAAGAAGCAGTATATGATAGAGTGACACAGAGACTAGTTGATGTTATGGCGCATCAACCAGAGAAAAAGTTTGGAACAGAGAGATTGAAGACAGTAAGAGCTACTGAGTTCATTGGAACAACCAAACCAGAAGAAGTTGAAAAGTGGATTAGGACTTTGGAAAAATGCTTCTAGAATAGGCGAGGAGATGTTTACTAGGAAGAATTCAAAGAAATCTTTAACAACAAATACTGCTCAAAGGCTTACAAGTCATTATTCTCCCGACGTCGGATATTCTCGATGCACCTGGTGCAACACGTCGGGAATGCCTTTTCCCCGATGTTCATTATGCCAACAACATAACAACATCAGGGACGTGTGGCTCTTCGGACTCACAACTTAACGCCAAGAGAAGTGTTTTCCTGACGTGGCATCATGCGAGCTTTCCCCGATGCATACAAAATGGCATCGGGGAAAGGCTTATTTCCCTACTCAAACAG

Protein sequence

MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPEEVEKWIRTLEKCF*NRRGDVY*EEFKEIFNNKYCSKAYKSLFSRRRIFSMHLVQHVGNAFSPMFIMPTT*QHQGRVALRTHNLTPREVFS*RGIMRAFPDAYKMASGKGLFPYSNX

Homology

[Close]

BLAST of Chy4G076870 vs. ExPASy TrEMBL
Match: A0A0A0L7X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-26
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPE 60
          MN EAHSVNLNAM EQ+E VYDRVTQRLVD+MAHQPEKKFG ERLK + ATEF GTTKPE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 EVEKWIRTLEKCF 74
          E EKWIRTLEKCF
Sbjct: 61 EFEKWIRTLEKCF 73

[Close]

BLAST of Chy4G076870 vs. ExPASy TrEMBL
Match: A0A5D3CDA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001250 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPE 60
          M+LEAHS+N NA  +Q+EA+YDRV QRL+DV+  QPEKKF  E+LK + AT+F GTT P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 EVEKWIRTLEKCF 74
          E EKW RTLEKCF
Sbjct: 78 EAEKWSRTLEKCF 90

[Close]

BLAST of Chy4G076870 vs. ExPASy TrEMBL
Match: A0A5D3CSN0 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00330 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPE 60
          ++LE H VN +   EQEE VYDRV Q ++DVM  Q EKKFG ERL+ +  TEF GTT+P 
Sbjct: 18 IDLEVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGIERLEALGTTEFTGTTEPR 77

Query: 61 EVEKWIRTLEKCF 74
          E +K I+TLEKCF
Sbjct: 78 EADKRIKTLEKCF 90

[Close]

BLAST of Chy4G076870 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 4  EAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPEEVE 63
          EAH++N NA  E+EEA+YDR  QRL++ +A Q +K FG ER+K + ATEF G    EE E
Sbjct: 8  EAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHEEAE 67

Query: 64 KWIRTLEKCF 74
          KWIRTLEKCF
Sbjct: 68 KWIRTLEKCF 77

[Close]

BLAST of Chy4G076870 vs. ExPASy TrEMBL
Match: A0A5D3DZA3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002250 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 32 MAHQPEKKFGTERLKTVRATEFIGTTKPEEVEKWIRTLEKCF*NRRGDVY*EEFKEIFNN 91
          MA Q +KKFG ERLK + ATEFIGT KP+E EKWIRTLEKCF   +G V   +FKEIFNN
Sbjct: 1  MAQQSKKKFGIERLKALGATEFIGTIKPKEAEKWIRTLEKCFRVMQGRVDWHDFKEIFNN 60

[Close]

BLAST of Chy4G076870 vs. NCBI nr
Match: KGN58005.1 (hypothetical protein Csa_009787 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 1.90e-34
Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 1   MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPE 60
           MN EAHSVNLNAM EQ+E VYDRVTQRLVD+MAHQPEKKFG ERLK + ATEF GTTKPE
Sbjct: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61  EVEKWIRTLEKCF*NRRGDVY*EEFKEIFNNKYCSKAYKSLFSRR 105
           E EKWIRTLEKCF   R  V     +E+F  K   K+  +  S+R
Sbjct: 61  EFEKWIRTLEKCF---RRIV-----EEMFARKNSKKSLTTNTSQR 97

[Close]

BLAST of Chy4G076870 vs. NCBI nr
Match: KAA0037861.1 (hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821.1 hypothetical protein E5676_scaffold127G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 2.80e-25
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPE 60
          M+LEAHS+N NA  +Q+EA+YDRV QRL+DV+  QPEKKF  E+LK + AT+F GTT P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 EVEKWIRTLEKCF 73
          E EKW RTLEKCF
Sbjct: 78 EAEKWSRTLEKCF 90

[Close]

BLAST of Chy4G076870 vs. NCBI nr
Match: KAA0066608.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.08e-19
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 1  MNLEAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPE 60
          ++LE H VN +   EQEE VYDRV Q ++DVM  Q EKKFG ERL+ +  TEF GTT+P 
Sbjct: 18 IDLEVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGIERLEALGTTEFTGTTEPR 77

Query: 61 EVEKWIRTLEKCF 73
          E +K I+TLEKCF
Sbjct: 78 EADKRIKTLEKCF 90

[Close]

BLAST of Chy4G076870 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 2.87e-19
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 4  EAHSVNLNAMMEQEEAVYDRVTQRLVDVMAHQPEKKFGTERLKTVRATEFIGTTKPEEVE 63
          EAH++N NA  E+EEA+YDR  QRL++ +A Q +K FG ER+K + ATEF G    EE E
Sbjct: 8  EAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHEEAE 67

Query: 64 KWIRTLEKCF 73
          KWIRTLEKCF
Sbjct: 68 KWIRTLEKCF 77

[Close]

BLAST of Chy4G076870 vs. NCBI nr
Match: KAA0056429.1 (hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa] >TYK29093.1 hypothetical protein E5676_scaffold120G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.71e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 32 MAHQPEKKFGTERLKTVRATEFIGTTKPEEVEKWIRTLEKCF*NRRGDVY*EEFKEIFNN 91
          MA Q +KKFG ERLK + ATEFIGT KP+E EKWIRTLEKCF   +G V   +FKEIFNN
Sbjct: 1  MAQQSKKKFGIERLKALGATEFIGTIKPKEAEKWIRTLEKCFRVMQGRVDWHDFKEIFNN 60

The following BLAST results are available for this feature:

BLAST of Chy4G076870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G076870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7X2	3.3e-26	84.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1	[more]
A0A5D3CDA4	1.9e-18	65.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CSN0	3.7e-14	58.90	A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0LI31	3.7e-14	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1	[more]
A0A5D3DZA3	1.2e-12	68.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy4G076870 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58005.1	1.90e-34	66.67	hypothetical protein Csa_009787 [Cucumis sativus]	[more]
KAA0037861.1	2.80e-25	65.75	hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821...	[more]
KAA0066608.1	2.08e-19	58.90	A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase ancho...	[more]
KGN61535.1	2.87e-19	60.00	hypothetical protein Csa_006696 [Cucumis sativus]	[more]
KAA0056429.1	1.71e-17	68.33	hypothetical protein E6C27_scaffold186G001860 [Cucumis melo var. makuwa] >TYK290...	[more]

BLAST of Chy4G076870 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G076870.1	Chy4G076870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process