Chy4G076860 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G076860
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ribosome-recycling factor, chloroplastic
Location	chrH04: 14156511 .. 14156795 (-)
RNA-Seq Expression	Chy4G076860
Synteny	Chy4G076860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTTCGATAGTTGCATTATCAGGAGAATTAAGCAAGCTTCGAACGGGCAGGGCATCATCTGGTACATTCACTGTCGTATTTATCTAACATTTACACTTCAAGGTTTTATTGTCTTAGCCTGCCCTTGTGATTGCTTACACTAACTCTTACACTGTACTTGCAGGAATGCTTGACCACATTATAGTAGAAACTTTAGGTGTGAAGCTGCCGTTGAATCAGATTGCGGCTGTATCGATCTTGGATTCTAAAACATTGTCAATAAATCCTTATGATCCCTGT

mRNA sequence

ATGGAGGCTTCGATAGTTGCATTATCAGGAGAATTAAGCAAGCTTCGAACGGGCAGGGCATCATCTGGTACATTCACTGTCCCTGCCCTTGTGATTGCTTACACTAACTCTTACACTGTACTTGCAGGAATGCTTGACCACATTATAGTAGAAACTTTAGGTGTGAAGCTGCCGTTGAATCAGATTGCGGCTGTATCGATCTTGGATTCTAAAACATTGTCAATAAATCCTTATGATCCCTGT

Coding sequence (CDS)

ATGGAGGCTTCGATAGTTGCATTATCAGGAGAATTAAGCAAGCTTCGAACGGGCAGGGCATCATCTGGTACATTCACTGTCCCTGCCCTTGTGATTGCTTACACTAACTCTTACACTGTACTTGCAGGAATGCTTGACCACATTATAGTAGAAACTTTAGGTGTGAAGCTGCCGTTGAATCAGATTGCGGCTGTATCGATCTTGGATTCTAAAACATTGTCAATAAATCCTTATGATCCCTGT

Protein sequence

MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLNQIAAVSILDSKTLSINPYDPC

Homology

[Close]

BLAST of Chy4G076860 vs. ExPASy Swiss-Prot
Match: Q1LNF5 (Ribosome-recycling factor OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=frr PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-06
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
          M+ SI A   +L+K+RTGRA +                    G+LDH+ V+  G  +P++
Sbjct: 14 MQKSIEAFKADLAKVRTGRAHT--------------------GLLDHVQVDYYGSMVPIS 72

Query: 61 QIAAVSILDSKTLSINPYD 80
          Q+AAVS+ D++T+S+ P++
Sbjct: 74 QVAAVSLADARTISVQPWE 72

[Close]

BLAST of Chy4G076860 vs. ExPASy Swiss-Prot
Match: Q1H142 (Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) OX=265072 GN=frr PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-05
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
          M+ SI AL  +LSK+RTGRA +                    G+LDH+ VE  G  + +N
Sbjct: 13 MQKSIEALKADLSKVRTGRAHT--------------------GLLDHVQVEYYGSMVAIN 71

Query: 61 QIAAVSILDSKTLSINPYD 80
          Q+A+VS+ D++TL++  Y+
Sbjct: 73 QVASVSLGDARTLNVQAYE 71

[Close]

BLAST of Chy4G076860 vs. ExPASy Swiss-Prot
Match: Q3SKN6 (Ribosome-recycling factor OS=Thiobacillus denitrificans (strain ATCC 25259) OX=292415 GN=frr PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-05
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 1  MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
          M  ++ AL  +L+K+RTGRA                     AG+LDH++V+  G   P+ 
Sbjct: 17 MGKTLEALKNDLAKVRTGRAH--------------------AGILDHVLVDYYGNPTPVP 75

Query: 61 QIAAVSILDSKTLSINPYD 80
          Q+A VS++DS+TL + PY+
Sbjct: 77 QVANVSLVDSRTLGVQPYE 75

[Close]

BLAST of Chy4G076860 vs. ExPASy Swiss-Prot
Match: A8GIE3 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) OX=399741 GN=frr PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-05
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 1  MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
          ME S+ A   ++SK+RTGRAS                      +LD I+VE  G   PL 
Sbjct: 13 MEKSVEAFKNQISKIRTGRAS--------------------PSILDGIMVEYYGASTPLR 71

Query: 61 QIAAVSILDSKTLSINPYD 80
          Q+A+V++ DS+TL IN +D
Sbjct: 73 QLASVTVEDSRTLKINVFD 71

[Close]

BLAST of Chy4G076860 vs. ExPASy Swiss-Prot
Match: A1TN72 (Ribosome-recycling factor OS=Acidovorax citrulli (strain AAC00-1) OX=397945 GN=frr PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-05
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
          M+ SIVA    L+K+RTGRA+      PAL              LD + VE  G  +PL+
Sbjct: 14 MDQSIVAFKNNLAKIRTGRAN------PAL--------------LDSVQVEYYGSMVPLS 72

Query: 61 QIAAVSILDSKTLSINPYD 80
          Q+A VS++D++T+S+ P++
Sbjct: 74 QVANVSLIDARTISVQPWE 72

[Close]

BLAST of Chy4G076860 vs. ExPASy TrEMBL
Match: A0A5D3DLY3 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00450 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.7e-18
Identity = 58/80 (72.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEASIVALSGELSKLRTGRASS                    GMLDHIIVET GVKLPLN
Sbjct: 93  MEASIVALSGELSKLRTGRASS--------------------GMLDHIIVETSGVKLPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 81
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. ExPASy TrEMBL
Match: A0A1S3B2S9 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.7e-18
Identity = 58/80 (72.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEASIVALSGELSKLRTGRASS                    GMLDHIIVET GVKLPLN
Sbjct: 93  MEASIVALSGELSKLRTGRASS--------------------GMLDHIIVETSGVKLPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 81
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. ExPASy TrEMBL
Match: A0A0A0KA50 (Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G008020 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 57/80 (71.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEASIVALSGELSKLRTGRAS                     GMLDHIIVET GVKLPLN
Sbjct: 93  MEASIVALSGELSKLRTGRAS--------------------PGMLDHIIVETSGVKLPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 81
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. ExPASy TrEMBL
Match: A0A6J1BWU9 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006057 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.0e-16
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEA+I ALSGELSKLRTGRASS                    GMLDHIIVET G+K+PLN
Sbjct: 93  MEAAIAALSGELSKLRTGRASS--------------------GMLDHIIVETSGLKMPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 81
           QIA VS+LDSKTLSINPYDP
Sbjct: 153 QIAVVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. ExPASy TrEMBL
Match: A0A6J1JKE4 (Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487708 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEA+I ALSGELSKLRTGRASS                    GMLDHIIVE  GV++PLN
Sbjct: 93  MEAAIAALSGELSKLRTGRASS--------------------GMLDHIIVEISGVRMPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 81
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. NCBI nr
Match: XP_008441363.1 (PREDICTED: ribosome-recycling factor [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 8.82e-23
Identity = 58/80 (72.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEASIVALSGELSKLRTGRASSG                    MLDHIIVET GVKLPLN
Sbjct: 93  MEASIVALSGELSKLRTGRASSG--------------------MLDHIIVETSGVKLPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 80
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. NCBI nr
Match: KAA0056597.1 (ribosome-recycling factor [Cucumis melo var. makuwa] >TYK24280.1 ribosome-recycling factor [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.33e-22
Identity = 58/80 (72.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEASIVALSGELSKLRTGRASSG                    MLDHIIVET GVKLPLN
Sbjct: 93  MEASIVALSGELSKLRTGRASSG--------------------MLDHIIVETSGVKLPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 80
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. NCBI nr
Match: XP_004138478.2 (uncharacterized protein LOC101216947 [Cucumis sativus] >KGN45719.1 hypothetical protein Csa_004901 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 4.85e-22
Identity = 57/80 (71.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEASIVALSGELSKLRTGRAS G                    MLDHIIVET GVKLPLN
Sbjct: 93  MEASIVALSGELSKLRTGRASPG--------------------MLDHIIVETSGVKLPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 80
           QIAAVS+LDSKTLSINPYDP
Sbjct: 153 QIAAVSVLDSKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. NCBI nr
Match: XP_008231154.1 (PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor [Prunus mume])

HSP 1 Score: 94.7 bits (234), Expect = 2.03e-21
Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEA+I ALS ELSKLRTGRAS GTF++  L           + +LDHIIVET GVKLPL+
Sbjct: 88  MEAAITALSAELSKLRTGRASPGTFSISRL-----------SNLLDHIIVETGGVKLPLS 147

Query: 61  QIAAVSILDSKTLSINPYDP 80
           QIA VS+LDSKTLSINP+DP
Sbjct: 148 QIAVVSVLDSKTLSINPFDP 156

[Close]

BLAST of Chy4G076860 vs. NCBI nr
Match: XP_038885565.1 (ribosome-recycling factor isoform X2 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 1.82e-20
Identity = 53/80 (66.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEA+I ALSGELSKLRTGRASSG                    MLDHIIVET GVK+PLN
Sbjct: 93  MEAAIAALSGELSKLRTGRASSG--------------------MLDHIIVETSGVKMPLN 152

Query: 61  QIAAVSILDSKTLSINPYDP 80
           QIA VS+LD KTLSINPYDP
Sbjct: 153 QIAVVSVLDPKTLSINPYDP 152

[Close]

BLAST of Chy4G076860 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-15
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1   MEASIVALSGELSKLRTGRASSGTFTVPALVIAYTNSYTVLAGMLDHIIVETLGVKLPLN 60
           MEA+I ALS +L+KLRTGRA+                     GMLDHI+VET GVK+PLN
Sbjct: 97  MEAAIDALSRDLTKLRTGRAA--------------------PGMLDHIVVETGGVKMPLN 156

Query: 61  QIAAVSILDSKTLSINPYDP 81
            +A VS+LD KTLS+NPYDP
Sbjct: 157 HLALVSVLDPKTLSVNPYDP 156

The following BLAST results are available for this feature:

BLAST of Chy4G076860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1LNF5	8.2e-06	34.18	Ribosome-recycling factor OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM ...	[more]
Q1H142	1.8e-05	36.71	Ribosome-recycling factor OS=Methylobacillus flagellatus (strain KT / ATCC 51484...	[more]
Q3SKN6	1.8e-05	35.44	Ribosome-recycling factor OS=Thiobacillus denitrificans (strain ATCC 25259) OX=2...	[more]
A8GIE3	2.4e-05	37.97	Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) OX=399741 GN=f...	[more]
A1TN72	3.1e-05	37.97	Ribosome-recycling factor OS=Acidovorax citrulli (strain AAC00-1) OX=397945 GN=f...	[more]

BLAST of Chy4G076860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLY3	9.7e-18	72.50	Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B2S9	9.7e-18	72.50	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499...	[more]
A0A0A0KA50	3.7e-17	71.25	Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G008...	[more]
A0A6J1BWU9	7.0e-16	66.25	Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JKE4	1.2e-15	66.25	Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Chy4G076860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441363.1	8.82e-23	72.50	PREDICTED: ribosome-recycling factor [Cucumis melo]	[more]
KAA0056597.1	1.33e-22	72.50	ribosome-recycling factor [Cucumis melo var. makuwa] >TYK24280.1 ribosome-recycl...	[more]
XP_004138478.2	4.85e-22	71.25	uncharacterized protein LOC101216947 [Cucumis sativus] >KGN45719.1 hypothetical ...	[more]
XP_008231154.1	2.03e-21	66.25	PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor [Prunus mume]	[more]
XP_038885565.1	1.82e-20	66.25	ribosome-recycling factor isoform X2 [Benincasa hispida]	[more]

BLAST of Chy4G076860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01800.1	4.5e-15	55.00	Ribosome recycling factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1360.40		coord: 40..81 e-value: 1.9E-9 score: 39.1
None	No IPR available	PANTHER	PTHR20982:SF12	OSJNBA0076N16.8 PROTEIN	coord: 42..80 coord: 1..24
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 40..80 e-value: 5.8E-9 score: 36.1
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 1..24
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 42..80
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G076860.1	Chy4G076860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043023	ribosomal large subunit binding