Chy4G076830 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G076830
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Flocculation protein FLO11-like
Location	chrH04: 14045612 .. 14045872 (-)
RNA-Seq Expression	Chy4G076830
Synteny	Chy4G076830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTCTGCTATAAGTCCTTCTAAATCAGATGAGTTCAGTTGCTTTCCAGTTGATCCCCCAGTTTATGTTTCTGAGGTGTTCACAAAGTTTCCTGTGCAAGAGTTTGCTTCAAGGGTTGCTTCTGATTGTTTTGATTCTCAGGTGCCCCATGTTGCTCTTGGTGACCCCTCTTTTATTCCTCATACTGATCCTGATGTTTCTGATGTTGTCTCTGATTCTTCGAATGAGGATCATATTGCTATTGTCATTATGATGCGTTGA

mRNA sequence

GTGTCTGCTATAAGTCCTTCTAAATCAGATGAGTTCAGTTGCTTTCCAGTTGATCCCCCAGTTTATGTTTCTGAGGTGTTCACAAAGTTTCCTGTGCAAGAGTTTGCTTCAAGGGTTGCTTCTGATTGTTTTGATTCTCAGGTGCCCCATGTTGCTCTTGGTGACCCCTCTTTTATTCCTCATACTGATCCTGATGTTTCTGATGTTGTCTCTGATTCTTCGAATGAGGATCATATTGCTATTGTCATTATGATGCGTTGA

Coding sequence (CDS)

GTGTCTGCTATAAGTCCTTCTAAATCAGATGAGTTCAGTTGCTTTCCAGTTGATCCCCCAGTTTATGTTTCTGAGGTGTTCACAAAGTTTCCTGTGCAAGAGTTTGCTTCAAGGGTTGCTTCTGATTGTTTTGATTCTCAGGTGCCCCATGTTGCTCTTGGTGACCCCTCTTTTATTCCTCATACTGATCCTGATGTTTCTGATGTTGTCTCTGATTCTTCGAATGAGGATCATATTGCTATTGTCATTATGATGCGTTGA

Protein sequence

VSAISPSKSDEFSCFPVDPPVYVSEVFTKFPVQEFASRVASDCFDSQVPHVALGDPSFIPHTDPDVSDVVSDSSNEDHIAIVIMMR*

Homology

[Close]

BLAST of Chy4G076830 vs. ExPASy TrEMBL
Match: A0A5A7VAI8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00090 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 4  ISPSKSDEFSCFPVDPPVYVSEVFTKFPVQEFASRVASDCFDSQVPHVALGDPSFIPHTD 63
          +S SK    +C  V   +  S+VF KF  QE  SRVA + +DSQVPH+A   P  IPH D
Sbjct: 15 VSCSKVRFKTCCRVRRDISTSDVFAKFLAQESTSRVAFNFYDSQVPHIAPSKPFSIPHVD 74

Query: 64 PDVSDVVSDS 74
            V DVVSDS
Sbjct: 75 SYVYDVVSDS 84

[Close]

BLAST of Chy4G076830 vs. ExPASy TrEMBL
Match: A0A5D3B7G9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00660 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 4  ISPSKSDEFSCFPVDPPVYVSEVFTKFPVQEFASRVASDCFDSQVPHVALGDPSFIPHTD 63
          +S SK    +C  V   +  S+VF KF  QE  SRVA + +DSQVPH+A   P  IPH D
Sbjct: 15 VSCSKVRFKTCCRVRRDISTSDVFAKFLAQESTSRVAFNFYDSQVPHIAPSKPFSIPHVD 74

Query: 64 PDVSDVVSDS 74
            V DVVSDS
Sbjct: 75 SYVYDVVSDS 84

[Close]

BLAST of Chy4G076830 vs. NCBI nr
Match: KAA0063436.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.34e-08
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 4  ISPSKSDEFSCFPVDPPVYVSEVFTKFPVQEFASRVASDCFDSQVPHVALGDPSFIPHTD 63
          +S SK    +C  V   +  S+VF KF  QE  SRVA + +DSQVPH+A   P  IPH D
Sbjct: 15 VSCSKVRFKTCCRVRRDISTSDVFAKFLAQESTSRVAFNFYDSQVPHIAPSKPFSIPHVD 74

Query: 64 PDVSDVVSDS 73
            V DVVSDS
Sbjct: 75 SYVYDVVSDS 84

[Close]

BLAST of Chy4G076830 vs. NCBI nr
Match: TYJ95792.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.99e-08
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 4  ISPSKSDEFSCFPVDPPVYVSEVFTKFPVQEFASRVASDCFDSQVPHVALGDPSFIPHTD 63
          +S SK    +C  V   +  S+VF KF  QE  SRVA + +DSQVPH+A   P  IPH D
Sbjct: 15 VSCSKVRFKTCCRVRRDISTSDVFAKFLAQESTSRVAFNFYDSQVPHIAPSKPFSIPHVD 74

Query: 64 PDVSDVVSDS 73
            V DVVSDS
Sbjct: 75 SYVYDVVSDS 84

The following BLAST results are available for this feature:

BLAST of Chy4G076830 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G076830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAI8	5.4e-06	50.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3B7G9	5.4e-06	50.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Chy4G076830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063436.1	1.34e-08	50.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
TYJ95792.1	1.99e-08	50.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of Chy4G076830 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G076830.1	Chy4G076830.1	mRNA