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Chy4G076800 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCGTATGATTTCTCATCTTCTATTTTTTTTTTTTTTTTCTATTGACAGGATTTCGTTTTCTCTATTAATTGATTTCTTCGTTTAATTGATTGTATGTATCTTAAATATTTTCCCCCCGTACTTGGATAATTCAACCTTGTTCTTTATCTGTTCTTGTTTTATTAAGATTTCCGAAATTTGTGAATTGTAACCCTAGGATTCAGTTTCATTTAGGCATTACCATGATGGGTAATCTTCTGTTCAACAGAAAAATGACAGGCGTAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGAGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGCGTTGTGAGATTGGCATACTTATCTTTCTTTGTCACTTTCATTTGTTTGATGCAATCTTAGTTTTTCTTCTTTTTTCCTCATAATTCTTGCATTTGGATCATTTCTTAGTTCCATTTAGTAAATTATCGTGTTGGGTAACAACTCTTCAACTGGAAATTTAATTGCTGGATTCCTTTTTTCTTCTTTGTTTTGAAATTAATGTAGAATTTGTTTAAAACTGCAAGGCTATTATGTATTCTGCTTCTCTCTTCCTCTGTTTTTTTGTAATCTTACGTTGAGTCTTCATCATGCTGCAGAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGGTATCTTCTAGCTATTGGTGATATATTTTTTGCTCATACTATTTTAAGTTATAGTTAAAAGCCAATGACTTTACACCTCATGGTTCTGCTATCTTAACACACATTTTTTAAGTTTTATTTAAGCCGTGCTAATTTTCTTTGAAAGAATTCTTTGAGCTTTTCAAGATTAACAGTTGGTTTCTTATTTTGAGATCACTTAGGCTCCGTTTGGTAACCATTTCGTTTTTTGTTTGTAACTTTTTATAATTAAACCTATTTCCTCCTCATGTCTTACAATTTTGCTTCTTTCTTAAATACAATGGTTGAACGCTTAGCCAAATTCCAAAAACAAGAACAACTTTTTAAAAGCTACTTTTTAATTTTCAAATTTTGACTTGGTTTTTAAAACCATCAGTATAATGTAGATAACAAAGGAAGAAAGTTGGAGGTGGAAATAGTGTTTTAGGTTTAAGTTTTCAAAAACAAAATGGTTACTGTTAGGACTCTTCCTAAGAAGAACAAGATCTCAATTTATTGAATTATATCTATGAAGAAATAAAAGATAATCCAAGAATAAAGGAACTTGTGAGCCTCCCTCTTGAGTATTTTCACTCAAGCCCTAGATCACTCCACAAAATAACCTCCCTTCATTCACTCATCCTCTTTCTATTTATGCAACATGCAGTAGAACTTTTCATCGAAAGACCATTATACCCCTGAATACTAACATACTAATATTCTTATCTAGGTATCTAACAGTCGGGCGTTGGCCTTAGTGTTTTGTTTTCTCTTGTTTTATTTGATTAGGATTGTTTCAGTTTTCTGCGTAGATCTTACACTTTGTTAAAGGGTTTGTGGGTTTGTTTTCTTTTTATACTTTTGTATCTTGAGCATCAATCTCTTTACATCATTTCAGAGAATTAGAGACTCCTCAATACTAAAAACCAAGAAAGACCAACTTTTGATGCTTTCAGGCTTTAGATAGTTGATATTTATAGCACTCCAATAGGCTTTATGAATGTTCTTTTTTATTCAGACTTCATTCTGAAATCAAATTTTTGGGTCTTATATGGAATAGTTCATTCACATATGAAATGTAGAATAAACTTTAAAGATACAACACTGCCTAATTGCCTAACAGACTGCTTTCTCATTTCTGGTTCAGTTGATTTTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGGTAACTTTTTTCAACATCACGAATCGTCTACTCTCTATTGACATAATCTGCATGAGCTTCATCTTTACTATAACAGAAAGTTATGTTGTGTTTGTGTATAAATTGCAAAGTGCTAATTTATCTATTAAGAAGAAAGTGGTGAGAATTTGTATGCAGTTTTCCTATAAGTCATTATCACATTTCATTTAATAACAGAACTTTTTTGAAGTTTCATCAGTTTATTTAAGTTTCGAACAATATTACCAAACCTAATCTAACTACTCACGAACCGCTTACTCATTTTGAATGGAGAACCATTAATATGGATGTACATAAAGTCATTTGTATACTATACCAGCAGTTTATCGACTTAGATAATTTAATTGTTTTACAAGTTCAATTGAATTAATTTCAATTATTTACAGGTACAATATATTTGAATTTGGACACATTTGAAGCCTAAGTCATTACAAATGACTTTGGTAATGTGTATAAATTTCAAAGTGCTAATTTATCTATTAAGAAGAAAGTGGTGAGAATTTGTATGCAGTTTTCCAATAAGTCATTATCACATTTCATTTAATAACAGAACTTTTTTGAAGTTTCATCGATTTATTTAAGTTTCGAACAATATTACCAAACCTAATCCAACTACTCACGAACCACTTGCTCATTATGAATGGAGAACTAATGACTTAGGCTTCAAATGTGTCAAAATTCAAATATATTGTACCTGTAAATAATTGAAATTAATTCAATTGAACTTGTAAAACAATTAAATTATCTAAGTCGATAAACTGCTGGTATAGTATACAAATGACTTTATGTACATCCATATTAATGGTTTATATTTTTCATATTGAAGATTTGGCTGGTCATTTTTGCCTATCCTAATTAAGAGACAAATTTTCTTGTTAAAAATTACAGCTGCCACCTGCCCCACCACCCCCACCATATCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCGTAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGAGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGCGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTTTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATATCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCGTAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGAGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGCGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTTTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATATCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGVEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDFENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPYPEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF* Homology
BLAST of Chy4G076800 vs. ExPASy Swiss-Prot
Match: F4IXJ7 (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 2.5e-85 Identity = 176/290 (60.69%), Postives = 194/290 (66.90%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy Swiss-Prot
Match: Q54PN3 (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27 Identity = 77/202 (38.12%), Postives = 114/202 (56.44%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy Swiss-Prot
Match: Q921D4 (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2) HSP 1 Score: 110.2 bits (274), Expect = 3.6e-23 Identity = 85/241 (35.27%), Postives = 123/241 (51.04%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy Swiss-Prot
Match: Q7Q107 (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae OX=7165 GN=MED6 PE=3 SV=3) HSP 1 Score: 109.8 bits (273), Expect = 4.7e-23 Identity = 84/235 (35.74%), Postives = 117/235 (49.79%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy Swiss-Prot
Match: Q3SZY9 (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=MED6 PE=2 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22 Identity = 83/241 (34.44%), Postives = 122/241 (50.62%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy TrEMBL
Match: A0A0A0L8C2 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=3 SV=1) HSP 1 Score: 508.1 bits (1307), Expect = 2.2e-140 Identity = 250/254 (98.43%), Postives = 253/254 (99.61%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy TrEMBL
Match: A0A5D3CDR8 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00160 PE=3 SV=1) HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138 Identity = 248/255 (97.25%), Postives = 252/255 (98.82%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy TrEMBL
Match: A0A1S3BHR9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=3 SV=1) HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138 Identity = 248/255 (97.25%), Postives = 252/255 (98.82%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy TrEMBL
Match: A0A6J1D4P7 (Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016983 PE=3 SV=1) HSP 1 Score: 485.7 bits (1249), Expect = 1.2e-133 Identity = 240/254 (94.49%), Postives = 241/254 (94.88%), Query Frame = 0
BLAST of Chy4G076800 vs. ExPASy TrEMBL
Match: A0A6J1G911 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111452031 PE=3 SV=1) HSP 1 Score: 469.9 bits (1208), Expect = 6.6e-129 Identity = 234/254 (92.13%), Postives = 240/254 (94.49%), Query Frame = 0
BLAST of Chy4G076800 vs. NCBI nr
Match: XP_004149176.2 (mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN58013.1 hypothetical protein Csa_011693 [Cucumis sativus]) HSP 1 Score: 501 bits (1290), Expect = 1.08e-178 Identity = 250/254 (98.43%), Postives = 253/254 (99.61%), Query Frame = 0
BLAST of Chy4G076800 vs. NCBI nr
Match: XP_008447572.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo] >KAA0050863.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa] >TYK08489.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 494 bits (1273), Expect = 3.92e-176 Identity = 248/255 (97.25%), Postives = 252/255 (98.82%), Query Frame = 0
BLAST of Chy4G076800 vs. NCBI nr
Match: XP_038896808.1 (mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]) HSP 1 Score: 490 bits (1262), Expect = 1.80e-174 Identity = 245/254 (96.46%), Postives = 247/254 (97.24%), Query Frame = 0
BLAST of Chy4G076800 vs. NCBI nr
Match: XP_022148297.1 (mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]) HSP 1 Score: 479 bits (1232), Expect = 6.72e-170 Identity = 240/254 (94.49%), Postives = 241/254 (94.88%), Query Frame = 0
BLAST of Chy4G076800 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >KAG7036453.1 Mediator of RNA polymerase II transcription subunit 6 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 464 bits (1194), Expect = 3.60e-164 Identity = 234/254 (92.13%), Postives = 240/254 (94.49%), Query Frame = 0
BLAST of Chy4G076800 vs. TAIR 10
Match: AT3G21350.1 (RNA polymerase transcriptional regulation mediator-related ) HSP 1 Score: 337.4 bits (864), Expect = 9.9e-93 Identity = 177/249 (71.08%), Postives = 195/249 (78.31%), Query Frame = 0
BLAST of Chy4G076800 vs. TAIR 10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related ) HSP 1 Score: 316.6 bits (810), Expect = 1.8e-86 Identity = 176/290 (60.69%), Postives = 194/290 (66.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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