Chy4G076330 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G076330
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	chrH04: 12876447 .. 12879804 (-)
RNA-Seq Expression	Chy4G076330
Synteny	Chy4G076330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCCCTTTTCACTCCCAGCATTTCTTCCATCAACAACATTGCTCCACCTCCTCATTTCTCTCCGACGCCCTCCCATAACGCTTCGGATTTCAAATTCCGCCGCCGCAGCTGCTGCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCTTGTTTACGGCAGACGGAATTTAGCTAACTTCATTTGCTCGGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTTACAATGGAACAACAATGGCTGATTATTTTAATGCTGTTATAAATTTTACAGTAAGCACTTGACATTCGGTTGGATTTTGGTAGTTTCAGTTGATTTTCTTTTGCTCATGAGATTGTGAGTTTGTGGAAATTAGGAGGGTCATGCCTGGCTTCTTATATAAATTTTGCATTTGTGTATTTCAGATTGAGTTTTTATGTTGGTGACTTTTTCGTATTCTCATTGTCCTATACGTTATGAATTATGATCACAACTTCATTTGTAGGCACAAATTTGTAGATAGTTAAGCTGTTTGATTTGATCAACGCATAAAGGTTCCAAATTCAGCCGGAAGGAACTATTTATGAACTACTTAAACTAAAAATGTAACTACTACATTAAAAAATGCATTGGAAGTTTGAATGTTCAATTAGGAGAATAACTTGTCCTAGTCTTCTCCTGATTACCAACAACGGTATTTACAACTTACAACCCCAATTGATAATCATTTAGTTTTTTCGTTCAAGCTTTTTGGAAAAATGTTCTCGTTTTTCCTTTACAATTGTCCTAGTCTATTAGATTTCATCTTCTTCAAAGTAACATTTCAAGCGTTAGCCAAATTTCAAAACAAAATTTACATTTTAAAAATTAATTTTTTTTTCAAAACTTGATGTGCATGATGAAACAAAGAACTCACAAGTGGAAATAGTGTTTATAAACTAAGTTTTCAAAAAATCGAGAACCAAAGACCTACACCATTTGATAACAATTTCGTTTTTAGTTTTCTATTTTTGAAATTTACGCTTGTTCTCTCTGTTTCTTTATCATGATTTTCACCCTTCTTAAATAAGCATTTAAATTCTTAGTCGAGCTTCAAAAACAAAAAATGGGGTTTTAAAAACTACTTTTTCCAATTTCTAAAGCTTGACTAGGTTTTTCAATACATCTATAGAAAGCGAAGAGAAAAGAAAAGAAAAGTTGGGAATAGTGTTTATAGACTTGATTTTCAAAAACCAAATGGTTATCAAACGGAGGTGCCATTTTTTGTTGTGTTTATTTTTTTGAGGGAGTTGAGACTTGAGTGAGCCTGGTTGTGTTCTAACTTAGTGTCTCTTTTTTCCATTGCGCTTGTTATTCGACCTGAAATATGGCGTGTTGTACCTGTATATGGTTCGTTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTCGGAGCCGTAGCTCTTTTTGCTTTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATTGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCTCTTGCCACAGATGTCACTACACTGAATTTTGAGTTTGATGACCGTGAAGAGGTGAAGGAGATAACCACAAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTAAGTAATGATAATTAACATCTAAATTCACAATCATTCCTTTTCTCCTTCCCTCATGTAATTTGCCTTTTCTTGTGAGCAATAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCACCTCTGATTCTTCTGTGTAAGTTATCCTTGTTAAACTTTGAAATATTCAAATTGATGAAGTAAAATGGTTGCCTTTCTAATCCTTGAACTGGCAATAATTTTTTGGTTTCAATACTACTTTGAGCCCAAACATTCGGCTTTGGTTCATTTTGGTGGTTGTATTTTTAAAATGTTCATTTAGTCCTTGTAGTTTTAGCAAGTGACCATTTTGATCCTTCTGTTCAAATGTTATCATAATTTGTATTCATAATAGAACCATCAGCAAATACATGGCTACTGACTAGACCATCATAGGTTGGCCTAGTGGTAAAAGAGAAGATATAGTCTTAATAACTAACTAAGAGTTACCTTGACACCCGGGTTCAATTCATGATGGCCACCTACCTAGGAATTAATTTCCTACGATGATACCCAAAAGGCGGATTGTACCGTGAGATTAGTTGAGGTGTGCGTAAACTGGCTTTGACACTCACTGATATAGATATATAAATATGTGAATATATAAATATGTAAAAATGTAAATATATAATTATGTAAATATGTAAATATATAAATATATATATATATGCATAAATATATAAATATATATATATGCATAAATATATAAATATGTATATATAGACACACACATATGACTACTGACTACGTGTTAAGAAATTTAGTGAATGAATTGTTAAGAAGTGAAATGAAAATGAAGGGAAATGAAGGGATCAAATAGTTATCCTTGTCTTATACGAGATCAACATGGATATTTTTAAAGTTCATGCACCAAAAGAAAAAAAAAATGTTGAAAGTACATGAACTGTAAAAGAACCAAAATTGGAATTACAGGACCAAAGTAGTATTTAAGCCTAAACTTTTTCTTGTCTAATCTTCTAATGGAATAGATTGTTTCATTTCATTAATCATGTTTCATGAGTTATCTAAATTGGAGTCCCATAGTTGGTAATGTAAGTTGCACAGAAAAAAAGGAAAGGGAAGGAAATAAACTTTTTTTGCCGAATCCATGCCAAAACTAGTTCACCATACAGATGTTAACTAATGGTTTTTCTTTCCTTTTTTCTTGCCCTCCGTAGCCTAGTTATATTCATGTTTGTTCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAACACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGGAGAGTTCTTTGA

mRNA sequence

ATGGCGGTTTCCCTTTTCACTCCCAGCATTTCTTCCATCAACAACATTGCTCCACCTCCTCATTTCTCTCCGACGCCCTCCCATAACGCTTCGGATTTCAAATTCCGCCGCCGCAGCTGCTGCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCTTGTTTACGGCAGACGGAATTTAGCTAACTTCATTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTCGGAGCCGTAGCTCTTTTTGCTTTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATTGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCTCTTGCCACAGATGTCACTACACTGAATTTTGAGTTTGATGACCGTGAAGAGGTGAAGGAGATAACCACAAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCACCTCTGATTCTTCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAACACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGGAGAGTTCTTTGA

Coding sequence (CDS)

ATGGCGGTTTCCCTTTTCACTCCCAGCATTTCTTCCATCAACAACATTGCTCCACCTCCTCATTTCTCTCCGACGCCCTCCCATAACGCTTCGGATTTCAAATTCCGCCGCCGCAGCTGCTGCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCTTGTTTACGGCAGACGGAATTTAGCTAACTTCATTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTCGGAGCCGTAGCTCTTTTTGCTTTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATTGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCTCTTGCCACAGATGTCACTACACTGAATTTTGAGTTTGATGACCGTGAAGAGGTGAAGGAGATAACCACAAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCACCTCTGATTCTTCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAACACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGGAGAGTTCTTTGA

Protein sequence

MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSLRFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL*

Homology

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BLAST of Chy4G076330 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-31
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 88  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDF 147
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 148 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 207
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 208 ESFIIEAFKSSEPFTERLLERGVLVVPL---------------------ATDVTTLNFEF 267
           +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 268 DDREE--VKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRG 327
           D R +  V +   K +  ++   V   EW  W+ +Q+   GV     VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 328 SGVGYPPWNALVTQLPPVKGLWSGL 330
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

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BLAST of Chy4G076330 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 4.7e-183
Identity = 329/338 (97.34%), Postives = 332/338 (98.22%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           MAVSLFTPSISS NNIAPPPHFSPTPSHNASDFKFRRRS C VHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQNKVIPIS LRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           TLNFEFDDREEVK+ITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDS VYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Chy4G076330 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 4.3e-176
Identity = 318/338 (94.08%), Postives = 327/338 (96.75%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  +SS NNIAPPPHFSPTPSHNA DFKF RRSC HVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           TLNFEFD+REEVK+IT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDS VYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Chy4G076330 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 4.3e-176
Identity = 318/338 (94.08%), Postives = 327/338 (96.75%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  +SS NNIAPPPHFSPTPSHNA DFKF RRSC HVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           TLNFEFD+REEVK+IT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDS VYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Chy4G076330 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 7.1e-155
Identity = 280/329 (85.11%), Postives = 299/329 (90.88%), Query Frame = 0


Query: 10  ISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSLRFLVYGRRN 69
           I S NN   PPH S T SHNA + KF RR CCHVHR  VSF+  P +  SLR+L Y RRN
Sbjct: 52  IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQYRRRN 111

Query: 70  LANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALAN 129
           LA+  CSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALAN
Sbjct: 112 LASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALAN 171

Query: 130 SSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKV 189
           SSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKV
Sbjct: 172 SSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKV 231

Query: 190 IPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDDR 249
           I ISTLRGIARLVICAGPESFI+EAFK+SEPFTERLLERGVLV+P ATD ++LNFEFD+R
Sbjct: 232 ITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDER 291

Query: 250 EEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRGSGVGY 309
           EE+K+ITTKRKRLWRLTPVYM++WSAWLD+QKKLAGV+SDS VYLSLRMDGRVRGSGVGY
Sbjct: 292 EEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY 351

Query: 310 PPWNALVTQLPPVKGLWSGLLDGMDGRVL 339
           PPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 352 PPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Chy4G076330 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 4.6e-154
Identity = 282/338 (83.43%), Postives = 305/338 (90.24%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           M VS+   +ISS NN  PPPH   T SHNA +FKF R  CC VH KTV FSS P L  SL
Sbjct: 1   MVVSM--ANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           R L   RRNLANF CSAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RXLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQ+KVIP+ +LRGIARLVICAGPESFI+EAF+SSEPFTE+LLERGV+VVP ATDV+
Sbjct: 181 KLRVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVS 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           +LNFEFD+RE++K++TTKRKRLWRLTPVYM EWSAWLDEQKKLAGV+++S VYLSLRMDG
Sbjct: 241 SLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 339
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Chy4G076330 vs. NCBI nr
Match: XP_004152010.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hypothetical protein Csa_017553 [Cucumis sativus])

HSP 1 Score: 651 bits (1680), Expect = 2.30e-235
Identity = 329/338 (97.34%), Postives = 332/338 (98.22%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           MAVSLFTPSISS NNIAPPPHFSPTPSHNASDFKFRRRS C VHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQNKVIPIS LRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           TLNFEFDDREEVK+ITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDS VYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 338
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Chy4G076330 vs. NCBI nr
Match: XP_008447350.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA0037902.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYJ98034.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 628 bits (1620), Expect = 3.21e-226
Identity = 318/338 (94.08%), Postives = 327/338 (96.75%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  +SS NNIAPPPHFSPTPSHNA DFKF RRSC HVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           TLNFEFD+REEVK+IT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDS VYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 338
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Chy4G076330 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 600 bits (1547), Expect = 3.55e-215
Identity = 307/338 (90.83%), Postives = 317/338 (93.79%), Query Frame = 0


Query: 1   MAVSLFTPSISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSL 60
           MAVSL TP+ISS NNI  PPHFS T     SDFKFRRR CCHVHRKT+SF+SSP LP SL
Sbjct: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60

Query: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
             L Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240
           KLRVDQNKVIPISTLRGIARLVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240

Query: 241 TLNFEFDDREEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDG 300
           TLNFEFD+REEVK++TTKRKRLWRLTPVYMTEWSAWLDEQKKLAGV+SDS VYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVTQLPPVKGLWSGLLDGMDGRVL 338
           RVRGSGVGYPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]

BLAST of Chy4G076330 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 558 bits (1437), Expect = 1.13e-197
Identity = 280/329 (85.11%), Postives = 299/329 (90.88%), Query Frame = 0


Query: 10  ISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSLRFLVYGRRN 69
           I S NN   PPH S T SHNA + KF RR CCHVHR  VSF+  P +  SLR+L Y RRN
Sbjct: 52  IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQYRRRN 111

Query: 70  LANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALAN 129
           LA+  CSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALAN
Sbjct: 112 LASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALAN 171

Query: 130 SSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKV 189
           SSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKV
Sbjct: 172 SSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKV 231

Query: 190 IPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDDR 249
           I ISTLRGIARLVICAGPESFI+EAFK+SEPFTERLLERGVLV+P ATD ++LNFEFD+R
Sbjct: 232 ITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDER 291

Query: 250 EEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRGSGVGY 309
           EE+K+ITTKRKRLWRLTPVYM++WSAWLD+QKKLAGV+SDS VYLSLRMDGRVRGSGVGY
Sbjct: 292 EEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGY 351

Query: 310 PPWNALVTQLPPVKGLWSGLLDGMDGRVL 338
           PPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 352 PPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Chy4G076330 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia])

HSP 1 Score: 555 bits (1430), Expect = 2.64e-197
Identity = 279/330 (84.55%), Postives = 301/330 (91.21%), Query Frame = 0


Query: 9   SISSINNIAPPPHFSPTPSHNASDFKFRRRSCCHVHRKTVSFSSSPRLPVSLRFLVYGRR 68
           +ISS NN  PPPH   T SHNA +FKF R  CC VH KTV FSS P L  SLR L   RR
Sbjct: 7   NISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRXLQPMRR 66

Query: 69  NLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALA 128
           NLANF CSAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALA
Sbjct: 67  NLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALA 126

Query: 129 NSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNK 188
           NSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ+K
Sbjct: 127 NSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQSK 186

Query: 189 VIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDD 248
           VIP+ +LRGIARLVICAGPESFI+EAF+SSEPFTE+LLERGV+VVP ATDV++LNFEFD+
Sbjct: 187 VIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSLNFEFDE 246

Query: 249 REEVKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRGSGVG 308
           RE++K++TTKRKRLWRLTPVYM EWSAWLDEQKKLAGV+++S VYLSLRMDGRVRGSGVG
Sbjct: 247 REDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRVRGSGVG 306

Query: 309 YPPWNALVTQLPPVKGLWSGLLDGMDGRVL 338
           YPPWNALV QLPPVKGLWSGLLDGMDGRVL
Sbjct: 307 YPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Chy4G076330 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 367.5 bits (942), Expect = 1.2e-101
Identity = 194/322 (60.25%), Postives = 247/322 (76.71%), Query Frame = 0


Query: 21  HFSPTPSHNASDFKFRRRSCCHVHRKTVSFS-SSPRLPVSLRFLVYGRRNLA-NFICSAA 80
           H S    + A +    RR   H HR+ + FS  + RL ++ +     ++ L+ N +C AA
Sbjct: 31  HISKQALYQAKESYSHRRISRHNHRERLDFSHRNHRLTITRK-----QQPLSFNTVCFAA 90

Query: 81  DKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVP 140
           D+P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGLIAT++L+GALAN +R+ EV 
Sbjct: 91  DEPSEISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVL 150

Query: 141 DILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLR 200
           +I+KGLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +  LR
Sbjct: 151 EIVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLR 210

Query: 201 GIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDDREEV-KEI 260
           G+ARLVICAGP  FI EAFK S+ +T+ L+ERGV+VV  ATD  +   EFD+ +   +E+
Sbjct: 211 GVARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEM 270

Query: 261 TTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRGSGVGYPPWNAL 320
           + +RK+LWR+TPV++ EW  WL+EQKKLA V+SDS VYLSLR+DGRVR SGVGYPPW A 
Sbjct: 271 SQRRKKLWRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAF 330

Query: 321 VTQLPPVKGLWSGLLDGMDGRV 338
           V QLPPVKG+W+GLLDGMDGRV
Sbjct: 331 VAQLPPVKGMWTGLLDGMDGRV 347

[Close]

BLAST of Chy4G076330 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-32
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 88  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDF 147
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 148 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 207
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 208 ESFIIEAFKSSEPFTERLLERGVLVVPL---------------------ATDVTTLNFEF 267
           +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 268 DDREE--VKEITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSSVYLSLRMDGRVRG 327
           D R +  V +   K +  ++   V   EW  W+ +Q+   GV     VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 328 SGVGYPPWNALVTQLPPVKGLWSGL 330
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of Chy4G076330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	8.1e-31	30.94	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Chy4G076330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L902	4.7e-183	97.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A5D3BG35	4.3e-176	94.08	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BHU5	4.3e-176	94.08	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1HGA1	7.1e-155	85.11	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1BP58	4.6e-154	83.43	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Chy4G076330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152010.1	2.30e-235	97.34	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hyp...	[more]
XP_008447350.1	3.21e-226	94.08	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA003...	[more]
XP_038888898.1	3.55e-215	90.83	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]
XP_022963501.1	1.13e-197	85.11	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]
XP_022131239.1	2.64e-197	84.55	protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_0221312...	[more]

BLAST of Chy4G076330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	1.2e-101	60.25	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	5.8e-32	30.94	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 84..161 e-value: 1.6E-26 score: 92.3
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 33..336
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 33..336

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G076330.1	Chy4G076330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane