Chy4G075010 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G075010
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 9991925 .. 9994943 (-)
RNA-Seq Expression	Chy4G075010
Synteny	Chy4G075010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACTGCTTTTTTAATTCACTTTGCTTCGTGCGGAACGGTGTCTCTGGAATCAAAAGCTATTGGGGGTGTTTATGCATCAAACTCTTTATATGAATATAGAGCTATCTCGATCCTCCAATAGAAGACTGCTGTTCATTACAACTCACTCAGAATAATGTATGCTCTGTTCTTTACAAATCATAGTTTGAATGCAAGATTAAATATTATTAATTATTCAGATCTGTACGAGTTCACTTTATATATCTTATTGAATCATATCTTCAATGCGATGGTGGTTTTTTTATACGTAGGCTCGCTTCATAATAGTTTATGCAATACATTTATTTCCAGTTCATTTAAGATCCCTTGTTAAAGATTGTGATTTGATTTTGCTTTGAAGCTGTTCATTTTTCGGCAAGACATTTGGATCCTTGAAGTTTAGATCATGAATCCTCTCTGGCCTTGTTCGATCATTCCTTCAGCAGTTTTTGGAGATGAAATTTTGTTTTAATGTATTGTTTTGTGTTTCGATTGCTATTCCTGTGGTTGTATTTGTTAGTGGTTGTCTGCTTGTTAGGTTTCATTTTCAATTTTCTATTTTAGTTTCCAGTTCAGATTCGGGTTAGTCGCTTTTGTATCCATTTTCTGGCATGTTTGGGTTGGGTTTTTGTTGTCTTGTTGTCTCCTAATCGCTATTCCATTTCAATATATCAATCAAAATCTCGTAATTGCTATTCCATTCCACATGTTATGAATCTTACTGAAGAAAATTATTCAGTCATGAAAATTACTCAATGGTTCTTTTCCGTCTAACTTAGAAATCATATCTCAAAAAATATGTATTTGATAAGAACTGCTGCTAATATAGTGCATCTTTGACTAACTGAATCATGCCTCATTATTTTCCTTAATCAATGTACTAGGAAGTTTGCATAATCTCTGGTCATGTTTAAACTGCAGTATTTTGGAATAAAAAGTATTTTTGTGTTTATTTCCTTTAAGTTTCACTTAATCTTTCCATACCCTTTGGGGTGGTGCAGAAAGTTATCATTCTGTACCTTGGAATGTTGGACCGGAGAAACATGGACGTGTTCGTGGTTATGGGGTAGGTGTTACCCCTTCTGAGTTGTTTGGATCATCATCTAAGGTATGCTATCTTGAGCGTCGCCTTAATGAGTCTGAAAAACATCTTCACGAATCTAAACGACAAAGAAAAACTGAGGTACAAACACTCCAGGATAGAATTAACGAATTAGAAAACCGTTTTGGGGATAGATTCCAAACTATGATGGCAGAGATGTGCAAACATATTTCTAGTTGATCGAGTGCCGTGGTTTAATGTTATAGAACATTTTGAGATTGTAATTTTGATGTTGTAGATTGTCATTCTTATACATGGATCAGAATTCTTCTCTCCATGAATCAGAATTCTTTCTGCTGTTTTTGTTCCTCCTTGGCGGCAGCAGCAGCTACAAATGACCATATGAAGCTTTTCCTTTAGATTCTCTTCATGGTCTTCATAGTCTTGCTGTTATTCTTAGTTTTTGATGGCCAAGCCAGTTCTTTGTTTAAACCCTTTATGTCTTTTTTATTCGGATTGCTTTCTTTTGTACTCCGTTTATGCTTTTTGTTTTCTTTGTACTTTGAGCTTTAGTTTCATTCCATTTTCTTAATGGGTTCAAAAAAAAAAAAAAAAAATTACAGCCTGTTCTGTCAAGTTTCTCTGACAAACATTATTTGTACTTGTAGATTAACTGCCATAAGAAACTAAACCACCTCACTGAGGCTAATAATGTAAGATTCAATATTACTATCAAGAGCCTAATGTTGCTGCAGCTAATTGTTTTTGAGGTCTATCATTTACATTTTTACATGGACCTAATTCTCATTGCGTTATGGAAATTTAAGGATCTAAGAACTACTCCTGACTGGAGAATAGAATTTTGGAGCATTTTCTACTTTGATGGATAAGATTGGCTGATCGGTAAGCTTGGTAGTTGGTTATATCACTCCTAAAAGAATAAGTTTGGATTTTAGAAAGTTGATGGAGTTCCGAATTGCATGAAAAAAGGAAGTTATAGAGGTTGTGGCAATTGGCAGGAAGACACTTCTTACACTCTTGTCAACCAAGCTTGCCACAGCTCTGAAGGATTGATGAATTGGCAAGATTTCAACACCAGAAGGCAGGAAGTACTATGTAAGGACCCAACACCTGTCACTCAGTAAAATCCCAACAATACAATAGAGAAACAGAGACAGTACTCTGTATTTATATATAGATATAGTTATAATAGATGACAAGGTTCATATACTATCCTCTAACAACGAAAAAAGCACACTAGACAATATCAACAAGAAGAAAATAGTAAAGAAAAGGATAACACTCCAGCTAATTCGAGAATGCTGGCCTTCTCCTCCAAAAGCTGCTGCTATTCTTTTCTCAATGATGATACCTTCAGCAATCCCAAAAACATTCCCTTATATACTCCCATACCTTCCCGTGGGTCCCACATCAGAATGTTCCATAAACCTAATAGGTTAAGCTACCCCCTGGTTATTACCTTTTCTGCCCCTACGTTTGTCTGTGTGAATAATAGGGGGTCTAAAATACTAACCAGCCCAAACCAATTTCTCGTTGGTAGGCTAGGTACCAGGAGTTCACTTCTATTCCTGTGAATTGTTGTGGCCATGGCGCCCCAAGGAATCTCAAGCACTTGATGAGAACAGACTCAACTATTAACATTAACAGTATAGGGTTTGCAGCGATAAACTTTTATCCGAAAACAATAATGTATATTATTTACTGTTAAAATAAAAGGTTAAGGTTGCATATAAGGTCACCTCCACCTAGATTTGGAATATATACAAATTGTTATTGCGTCTTCTAATATTGGTCTATAGCATTGAGATGTGGAAGTTGTGAGAACAGAATGAATTATTATCTGTTGGTTAAATATGTACATTTTGATATTCTGTGTATGTGATTCTGTGCCAGCTTGATTGTTTTACTTTCCCCTATTATGCAGGCTCGTTAG

mRNA sequence

ATGTTTACTGCTTTTTTAATTCACTTTGCTTCGTGCGGAACGGTGTCTCTGGAATCAAAAGCTATTGGGGAAAGTTATCATTCTGTACCTTGGAATGTTGGACCGGAGAAACATGGACGTGTTCGTGGTTATGGGGTAGGTGTTACCCCTTCTGAGTTGTTTGGATCATCATCTAAGGCTCGTTAG

Coding sequence (CDS)

ATGTTTACTGCTTTTTTAATTCACTTTGCTTCGTGCGGAACGGTGTCTCTGGAATCAAAAGCTATTGGGGAAAGTTATCATTCTGTACCTTGGAATGTTGGACCGGAGAAACATGGACGTGTTCGTGGTTATGGGGTAGGTGTTACCCCTTCTGAGTTGTTTGGATCATCATCTAAGGCTCGTTAG

Protein sequence

MFTAFLIHFASCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR*

Homology

[Close]

BLAST of Chy4G075010 vs. ExPASy TrEMBL
Match: A0A438HYC6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_046806 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.7e-04
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 7   IHFASCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSK 60
           + F S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+
Sbjct: 175 VAFTSVASTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSR 224

[Close]

BLAST of Chy4G075010 vs. ExPASy TrEMBL
Match: A0A438BM75 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_087343 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  SCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 62
           S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 622 SVASTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 669

[Close]

BLAST of Chy4G075010 vs. ExPASy TrEMBL
Match: A0A438GP09 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_053187 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  SCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 62
           S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 262 SVSSTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 309

[Close]

BLAST of Chy4G075010 vs. ExPASy TrEMBL
Match: A0A438HZS2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_036570 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  SCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 62
           S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 199 SVSSTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 246

[Close]

BLAST of Chy4G075010 vs. ExPASy TrEMBL
Match: A5AX44 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028763 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  SCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 62
           S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 803 SVASTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 850

[Close]

BLAST of Chy4G075010 vs. NCBI nr
Match: KAE8650873.1 (hypothetical protein Csa_002260 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 2.93e-33
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MFTAFLIHFASCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKA 60
          MFTAFLIHFASCGTVSLESKAIGESYHSVPWNVGPEKHGRV GYGVGVTPSE FGSSSKA
Sbjct: 1  MFTAFLIHFASCGTVSLESKAIGESYHSVPWNVGPEKHGRVLGYGVGVTPSE-FGSSSKA 60

[Close]

BLAST of Chy4G075010 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 52.8 bits (125), Expect = 2.59e-06
Identity = 24/28 (85.71%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 34  GPEKHGRVRGYGVGVTPSELFGSSSKAR 61
           GPEKHG V GYGVGVTPSELFGSSS  R
Sbjct: 92  GPEKHGHVHGYGVGVTPSELFGSSSTIR 119

[Close]

BLAST of Chy4G075010 vs. NCBI nr
Match: RVW33937.1 (hypothetical protein CK203_082983 [Vitis vinifera])

HSP 1 Score: 50.8 bits (120), Expect = 5.60e-06
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 10 ASCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 61
          +S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 42 SSGASTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 90

[Close]

BLAST of Chy4G075010 vs. NCBI nr
Match: RVW34896.1 (hypothetical protein CK203_113023 [Vitis vinifera])

HSP 1 Score: 51.2 bits (121), Expect = 6.74e-06
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  SCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 61
           S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 89  SVSSTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 136

[Close]

BLAST of Chy4G075010 vs. NCBI nr
Match: XP_034681042.1 (uncharacterized protein LOC117910979 [Vitis riparia])

HSP 1 Score: 50.4 bits (119), Expect = 9.14e-06
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 10 ASCGTVSLESKAIGESYHSVPWNVGPEKHGRVRGYGVGVTPSELFGSSSKAR 61
          +S  + S+ S  + E Y  V   +GPE+HGRVRGYG G TP+ +FGS+S+ R
Sbjct: 42 SSEASTSVASTYVDEIYTQV---MGPERHGRVRGYGFGPTPTSIFGSTSRRR 90

The following BLAST results are available for this feature:

BLAST of Chy4G075010 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G075010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HYC6	4.7e-04	47.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_046806 PE=4 SV=1	[more]
A0A438BM75	6.1e-04	49.02	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_087343 PE=4 SV=1	[more]
A0A438GP09	6.1e-04	49.02	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_053187 PE=4 SV=1	[more]
A0A438HZS2	6.1e-04	49.02	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_036570 PE=4 SV=1	[more]
A5AX44	6.1e-04	49.02	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028763 PE=4 SV=1	[more]

BLAST of Chy4G075010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650873.1	2.93e-33	96.72	hypothetical protein Csa_002260 [Cucumis sativus]	[more]
XP_038904040.1	2.59e-06	85.71	uncharacterized protein LOC120090445 [Benincasa hispida]	[more]
RVW33937.1	5.60e-06	48.08	hypothetical protein CK203_082983 [Vitis vinifera]	[more]
RVW34896.1	6.74e-06	49.02	hypothetical protein CK203_113023 [Vitis vinifera]	[more]
XP_034681042.1	9.14e-06	48.08	uncharacterized protein LOC117910979 [Vitis riparia]	[more]

BLAST of Chy4G075010 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G075010.1	Chy4G075010.1	mRNA