Chy4G073170 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G073170
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Dynein light chain
Location	chrH04: 6622142 .. 6622880 (-)
RNA-Seq Expression	Chy4G073170
Synteny	Chy4G073170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGAAGGGAAAGCAATCGTCGGAGAAACGGATATGTTGGAGGCCATGCAACAGGATGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGTACAACTTGATCTATTTCTAAAACAATTACTCCAATACGTACAACAATTTGTAAGAAGAATTGAACTCATATGTGCAATTTCTATGGTTATATATAAATTTGAGAAACCGATCAATTTTTACTATTAAAGATTTGAGATATAGTTGCAAGTACCCTCACACTTTAAGAGTGGTTTTTGCAATTTGTTCTATTTCCACTCTTGAATATCTAATTTTTGTTATCATATTTTAATTAATAAATTTTTGTATTAGTGTATGCATGAGAACTAAACTAATCGTTGAATTATGAGATAAACATTTAATTTGTTATATGAAAGAATTTGAAGAGAATGAAAGGAAATGGTTAATAGTAGTTATGATTGATGTGAAATTGTCATGAAAAAATGAGCAGGAATTTGACAGAATACATGGAGAAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAATTACCTGACCCTGCTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGA

mRNA sequence

ATGTTAGAAGGGAAAGCAATCGTCGGAGAAACGGATATGTTGGAGGCCATGCAACAGGATGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGAATACATGGAGAAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAATTACCTGACCCTGCTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGA

Coding sequence (CDS)

ATGTTAGAAGGGAAAGCAATCGTCGGAGAAACGGATATGTTGGAGGCCATGCAACAGGATGCTTTGAACCTTGCAGCTAAGGCACTTGATAGTTTTGATGTCACTGAAGCCACTGACATCGCCCGTTTCATTAAAAAGGAATTTGACAGAATACATGGAGAAGGATGGCAATGCATAGTGGGGACAGATTTTGGATCATTTGTGACACATTGTTTTGGATGCTTCATTTATTTTTGTGTTGGAAGTCTTGCAATTTTACTCTTTAGGGGTTCTGCTGCCTCACAACAACAACAATTACCTGACCCTGCTCATCACTTTTCTCTTATGGACAATACTCTCAAACCATGA

Protein sequence

MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQLPDPAHHFSLMDNTLKP*

Homology

[Close]

BLAST of Chy4G073170 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          M E KA++   DM E MQQDA++ A +AL+ F++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +A+LLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of Chy4G073170 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.1e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          M + KA++   DM E MQQDA++ A +AL+ +++ +  DIA FIKKEFD+ +   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Chy4G073170 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          M++ KA++   DM + MQQDA++ A +AL+ +++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of Chy4G073170 vs. ExPASy Swiss-Prot
Match: Q39580 (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 5  KAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIVGTDF 64
          KA++   DM E MQ DA++ A +AL+ +++ +  DIA +IKKEFDR H   W CIVG +F
Sbjct: 7  KAVIKNADMSEEMQADAVDCATQALEKYNIEK--DIAAYIKKEFDRKHNPTWHCIVGRNF 66

Query: 65 GSFVTHCFGCFIYFCVGSLAILLFR 90
          GS+VTH    FIYF +G +AILLF+
Sbjct: 67 GSYVTHETKHFIYFYLGQVAILLFK 89

[Close]

BLAST of Chy4G073170 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          M + KA++   DM E MQQDA++ A +AL+ +++ +  DIA +IKKEFD+ +   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFR 90
          G +FGS+VTH    FIYF +G +AILLF+
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of Chy4G073170 vs. ExPASy TrEMBL
Match: A0A5A7T1H5 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001190 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQL-PDPA-HHFSLMDNTLKP 116
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQL PDP+ HHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of Chy4G073170 vs. ExPASy TrEMBL
Match: A0A1S3BZU7 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQL-PDPA-HHFSLMDNTLKP 116
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQL PDP+ HHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of Chy4G073170 vs. ExPASy TrEMBL
Match: A0A0A0LIK5 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G851720 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 20  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIVGTDFGSFVTHCFGCFIYFC 79
           DALNLAAKALDSFDVTEATDIARFIKKEFDRIHG GWQCIVGTDFGSFVTHCFGCFIYFC
Sbjct: 36  DALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIVGTDFGSFVTHCFGCFIYFC 95

Query: 80  VGSLAILLFRGSAAS-QQQQLPDPAHHFSLMDNTLKP 116
           VGSLAILLFRGSAAS QQQQ P+P HHFSLMDNTLKP
Sbjct: 96  VGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 132

[Close]

BLAST of Chy4G073170 vs. ExPASy TrEMBL
Match: A0A6J1J2G7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HG GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQLPDPAH 105
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ   P P H
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH--PHPTH 102

[Close]

BLAST of Chy4G073170 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HG GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQLPDPAH 105
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ   P P H
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH--PHPTH 102

[Close]

BLAST of Chy4G073170 vs. NCBI nr
Match: XP_004146843.1 (dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical protein Csa_000829 [Cucumis sativus])

HSP 1 Score: 225 bits (573), Expect = 5.65e-74
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHG GWQCIV
Sbjct: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQ-LPDPAHHFSLMDNTLKP 115
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQ  P+P HHFSLMDNTLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQQFPEPTHHFSLMDNTLKP 116

[Close]

BLAST of Chy4G073170 vs. NCBI nr
Match: XP_008454627.1 (PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA0036763.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa] >TYJ95832.1 dynein light chain LC6, flagellar outer arm [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (529), Expect = 2.91e-67
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAI+GETDMLEAMQQDALNLA+KALDSFDVTEATDIARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLEAMQQDALNLASKALDSFDVTEATDIARFIKKEFDRTYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQL-PDPA-HHFSLMDNTLKP 115
           GTDFGSFVTHCFGCFIYFCVGSLA+LLFRGSAASQ+QQL PDP+ HHFSL+D TLKP
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAVLLFRGSAASQEQQLVPDPSTHHFSLID-TLKP 116

[Close]

BLAST of Chy4G073170 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 196 bits (499), Expect = 9.92e-63
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAI+GETDML+AMQQDALNLAAKALDSFDVTEATDIARFIKKEFD+I+G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQLPDPAHHFSLMDNTLK 114
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAAS+++Q P P   FS+M+ TLK
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQ-FSVME-TLK 112

[Close]

BLAST of Chy4G073170 vs. NCBI nr
Match: XP_022139644.1 (dynein light chain LC6, flagellar outer arm [Momordica charantia])

HSP 1 Score: 184 bits (468), Expect = 4.96e-58
Identity = 89/110 (80.91%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAI+GETDML+ MQQDAL+LAAKALDSFDVTEATDIARFIKKEFDRIHG GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQLPDPAHHFSLMD 110
           GTDFGSFVTHCFGCFIYFCVG+LA+LLFRGSA  QQ +   P   F+ ++
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQQTE---PTDQFAALE 107

[Close]

BLAST of Chy4G073170 vs. NCBI nr
Match: KAG6607846.1 (hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (468), Expect = 5.12e-58
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
           MLEGKAIVGETDML+AMQQDAL+LAAKALD FDVTEATDIARFIKKEFDR HG GWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASQQQQLPDPAH 104
           GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A QQ   P P H
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH--PHPTH 102

[Close]

BLAST of Chy4G073170 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-35
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          MLEGKA++G+TDM + M++DAL+LA+KALD FDVTE T IARFIKKEFDR +G GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT FGSFVTHC GCFI+F VGSL ILLF+GS
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]

BLAST of Chy4G073170 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          MLEGKA V ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGS 92
          GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of Chy4G073170 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-21
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIV 60
          MLEGKA+V ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSA 93
          G++FG F TH  G FIYF + +L  L+F+G++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of Chy4G073170 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-15
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   KAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIVGTDF 64
           +A++   DM + MQ++A+ +A  A + + V +  DIA  IKKEFD+ HG  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCFGCFIYFCVGSLAILLFR 90
           GS+VTH    F+YF +   A+LLF+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of Chy4G073170 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-14
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGEGWQCIVGTDFGSFVTHC 71
           DM   MQ  A   A   LDS +   +  +A  +KKEFD+ +G  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  FGCFIYFCVGSLAILLFR 90
            GCFIYF +  L +LLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of Chy4G073170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	5.1e-17	50.56	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	5.1e-17	50.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	1.1e-16	48.31	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q39580	1.1e-16	51.76	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
Q24117	1.1e-16	49.44	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]

BLAST of Chy4G073170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1H5	1.6e-50	89.74	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G0...	[more]
A0A1S3BZU7	1.6e-50	89.74	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103494993 PE=3 SV=1	[more]
A0A0A0LIK5	3.5e-45	94.85	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G851720 PE=3 SV=1	[more]
A0A6J1J2G7	1.9e-43	88.46	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111480715 PE=3 SV=1	[more]
A0A6J1FSQ1	1.9e-43	88.46	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]

BLAST of Chy4G073170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146843.1	5.65e-74	95.69	dynein light chain 2, cytoplasmic [Cucumis sativus] >KAE8651306.1 hypothetical p...	[more]
XP_008454627.1	2.91e-67	89.74	PREDICTED: dynein light chain LC6, flagellar outer arm [Cucumis melo] >KAA003676...	[more]
XP_038899068.1	9.92e-63	85.96	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
XP_022139644.1	4.96e-58	80.91	dynein light chain LC6, flagellar outer arm [Momordica charantia]	[more]
KAG6607846.1	5.12e-58	88.46	hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy4G073170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	1.5e-35	75.82	Dynein light chain type 1 family protein	[more]
AT3G16120.1	4.9e-23	56.04	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.5e-21	52.17	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	4.9e-15	44.71	Dynein light chain type 1 family protein	[more]
AT5G20110.1	2.4e-14	48.72	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 1.8E-43 score: 160.4
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 6..89 e-value: 4.6E-31 score: 107.0
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..97
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 2.4E-30 score: 106.3
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G073170.1	Chy4G073170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding