Chy4G070500 (gene) Cucumber (hystrix) v1

Overview
NameChy4G070500
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionE3 ubiquitin-protein ligase MIEL1 isoform X2
LocationchrH04: 2956809 .. 2957254 (-)
RNA-Seq ExpressionChy4G070500
SyntenyChy4G070500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTGGGTGATGTTGAATGCCGGATTCTTGTCTTGACCCTTTCTAAATCTGGAGTATTGGCAGTAACTTTGAAGTTCTGGACATGTTTTTACTTTTTCAACGTGTTCGTGATGAAGTCTTGATTATCCTTGGACGCTCAGGACCATAAGGATTCTAGGTGGCTCATGGTAGCAAGATTACAAGAGCTGTAGGGGCGGTCTTTAGCGTTATATTCAGTGGACTGGATAGCCTTGGGTACATATATTCTATTCCTCCAGTTGAAAGATCAGCTACGCAAATTGTGCAATTCACCCTAGAAGCCAAAAGTTCAGATTCCTCTCATTTTATCAGTTCTCCTTCTCTCTCCAGTGAACCTTTTGCTTCCTCTTGCACGTTGCCCTCTGGAACAATTTTCAGTATGCTGGCAGTTACTGGGTACGACCACCTTGAAGAAGAGCTGTAG

mRNA sequence

ATGCTTCTGGGTGATGTTGAATGCCGGATTCTTGTCTTGACCCTTTCTAAATCTGGAGTATTGGCAGTGGCTCATGGTAGCAAGATTACAAGAGCTGTAGGGGCGGTCTTTAGCGTTATATTCAGTGGACTGGATAGCCTTGGGTACATATATTCTATTCCTCCAGTTGAAAGATCAGCTACGCAAATTGTGCAATTCACCCTAGAAGCCAAAAGTTCAGATTCCTCTCATTTTATCAGTTCTCCTTCTCTCTCCAGTGAACCTTTTGCTTCCTCTTGCACGTTGCCCTCTGGAACAATTTTCAGTATGCTGGCAGTTACTGGGTACGACCACCTTGAAGAAGAGCTGTAG

Coding sequence (CDS)

ATGCTTCTGGGTGATGTTGAATGCCGGATTCTTGTCTTGACCCTTTCTAAATCTGGAGTATTGGCAGTGGCTCATGGTAGCAAGATTACAAGAGCTGTAGGGGCGGTCTTTAGCGTTATATTCAGTGGACTGGATAGCCTTGGGTACATATATTCTATTCCTCCAGTTGAAAGATCAGCTACGCAAATTGTGCAATTCACCCTAGAAGCCAAAAGTTCAGATTCCTCTCATTTTATCAGTTCTCCTTCTCTCTCCAGTGAACCTTTTGCTTCCTCTTGCACGTTGCCCTCTGGAACAATTTTCAGTATGCTGGCAGTTACTGGGTACGACCACCTTGAAGAAGAGCTGTAG

Protein sequence

MLLGDVECRILVLTLSKSGVLAVAHGSKITRAVGAVFSVIFSGLDSLGYIYSIPPVERSATQIVQFTLEAKSSDSSHFISSPSLSSEPFASSCTLPSGTIFSMLAVTGYDHLEEEL*
Homology
[Close]
BLAST of Chy4G070500 vs. ExPASy TrEMBL
Match: A0A5D3E656 (E3 ubiquitin-protein ligase MIEL1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007100 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 43/92 (46.74%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 23  VAHGSKITRAVGAVFSVIFSGLDSLGYIYSIPPVERSATQIVQFTLEAKSSDSSHFISSP 82
           V HGSKI RAVGAV    FS L S+G+I         AT      L+           SP
Sbjct: 20  VDHGSKIARAVGAV----FSALCSVGWI---------ATGTYNLFLQ----------FSP 79

Query: 83  SLSSEPFASSCTLPSGTIFSMLAVTGYDHLEE 115
           SLSSEPFASSC L SGTIF  LA  G   +++
Sbjct: 80  SLSSEPFASSCILLSGTIFITLAAAGIMEMKD 88

[Close]
BLAST of Chy4G070500 vs. NCBI nr
Match: KAA0038782.1 (E3 ubiquitin-protein ligase MIEL1 isoform X2 [Cucumis melo var. makuwa] >TYK31402.1 E3 ubiquitin-protein ligase MIEL1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.52e-06
Identity = 43/92 (46.74%), Postives = 49/92 (53.26%), Query Frame = 0 

Query: 23  VAHGSKITRAVGAVFSVIFSGLDSLGYIYSIPPVERSATQIVQFTLEAKSSDSSHFISSP 82
           V HGSKI RAVGAVFS     L S+G+I         AT      L+           SP
Sbjct: 20  VDHGSKIARAVGAVFSA----LCSVGWI---------ATGTYNLFLQF----------SP 79

Query: 83  SLSSEPFASSCTLPSGTIFSMLAVTGYDHLEE 114
           SLSSEPFASSC L SGTIF  LA  G   +++
Sbjct: 80  SLSSEPFASSCILLSGTIFITLAAAGIMEMKD 88

The following BLAST results are available for this feature:
BLAST of Chy4G070500 vs.
Match NameE-valueIdentityDescription
BLAST of Chy4G070500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E6561.4e-0446.74E3 ubiquitin-protein ligase MIEL1 isoform X2 OS=Cucumis melo var. makuwa OX=1194... [more]
BLAST of Chy4G070500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038782.13.52e-0646.74E3 ubiquitin-protein ligase MIEL1 isoform X2 [Cucumis melo var. makuwa] >TYK3140... [more]
BLAST of Chy4G070500 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy4G070500.1Chy4G070500.1mRNA