Chy4G067520 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G067520
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal L37a
Location	chrH04: 326972 .. 331701 (-)
RNA-Seq Expression	Chy4G067520
Synteny	Chy4G067520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTATCAAGTACTTTTGGAACCTGTTTCTCTCATTCTTGGTTTTGAAGTTCGATGCACTTTTAGAAGTTTTATTGGCAAGAAGACAATTAATGAACGGAAGTACTTTTGGACTCTGGTATGTCTTAATTCTTAATAAATTTTCGTACTAATCGTTTTACCTATTTTTACTTGAGAGTTATTAGCTTCTTTTCCTACTTTTGAGCTCTTTAGATTTAAGAAATAAATCTTTTACCAATGTTTAACTGGTGTAGTACTAGTTTTAGTTTTGAGCTAGTTTGAGGAAATTGACGACACGAGGACATTAACTAGGGTATGTAAAAAGCAATCTGCCAAGTTCGTGGATTTATGATTCCTGTGTCTCACCTGCCAAAGATAACCACTAACTACCTCAGCATCTGGTCGTAGTTTCCTACATAAAATCCTCTCAACTGTCAATAACTCAATTCTATATCTTCCTCTGTTACACCGACCATTCTTTTCCAACATTTTCTTTCAGCCCCCCTAGATTTTGTATTTTACATTGGAGCAATGCTTGGGTGCATCATGATGCACCAATATTTTATGTATTCTACTCCTATCATACACAAAAAATGAATTAATATATTTTAGAAAAGAAGTACGAAGAAAATGAATTAATATATTTCAGAAAAGAAGTACGAAGAAATTGTTATGTGATAAATTCTGATTAGATAATTTGGTAGGATGCACACAAAAAAAGGTGTGGCTAGGAGGTAACGAAGTATTTTTCTTTATGTCGATGGGTCATTTTTTATGTACTTTTATCAAACTGGCTTAGATCTCTTTCTGCCCCTTTTCCCTCAAAACTTTCCTTGTGGAACTAATGGATTACTTGCTTGACCAGAACCTGTTAAAACATTCTATTGACAAACTCTTTTCTGATCATTTAGCATTCCTTATATCAGCTTTGTATTCTACCATATGCAACTCTGAAAATTTGTCATTTTTGTGTGTCGTAATGCAGATCTTTGTGGCCTTGCAACGATACAGCAGTACAGTCGTAAGCATCGCTAACTTGCACATTTCACTTGTCATGGAACCATTAGATGGGGTAAATGGCCACCGTTTGCTCTTTCTTTTTTTGGAGTGCATAATTTTTTTTTCTTTTTTGAAGAAGCCATTCAAATATTCTGTGTAAATTCCTTGTTCTTCACACCTGCTCAATGTACAGTGAGGAACTATAGTTTCATTTGGATAACTATAGTTTTATTTGGATAACTAACCCAAAAGAAAAACAACAGAATCTTGGAAAGGTTCATATACAAGTTTAGTTCTGCTTATGAGAATTTGCAAAAGCTGCTGTGAAAAGAATAGTCAACAAAGTTTCTTTGTATAATGTTCTTTTCCCCTTCTTTTCTTTTAGTATTAATATTTATCACTTTTTAAACAAAATTAGAGATATTTGTGGATGGTGGTTCTTTTCTCCTTCCTTTTCTCTAGTGAGCAACCGTAAAAAAAATTCACAACTGAAGAACGAGACAACGAGACTCAAAATAAGAGAATGATCTGTGTGAGAGGAAAGTGATTGGTGAGAGAAGGATAGTAAACGAGTGAGATTAACCATTTTTGTGCTCGTGGATTTTGTTTTGGTAATTTCACTCGATGTTGATGTTAACAAAGGATAAAAAAGAATCTTCATTTTAAAAAGGACGAATCTCTTTTTTTCCTCTCTATTTAGGTCTTCCGTGTAGAAACCCTTAACACGTATCTTTTTTTCCATTCTAAAACCATTTCTAAACCAACAGAATAATGGAAACAAAATTTTGCATATGCACACTGTTAGAAATTATACCCACTATTTCATAAAATCACAAAATCACAAAATAATTGGAATACAATCTTTTCTTTTTTGTCCAAACTTCATTTTTAAATTGTAATGGGATGGTTTCTTCTACTAGAGAGATTAACCGTTTATAAAAAAAGATAAAAAAATTAAAGGTCCCCTTATTTGTAGAAGAAACATTGAATTATATCAAAATGGAGATTTAAGAATTCATAAACTTATTCGTTCAAATTTAAATTTTGGTGAAACAAATTTATATCAACATTAACAAAGGGAATTTCTTTAGATTAAAAAATTCATGGAACCTTTATCGTTTGACAAAAATTATGGAAATTAACTTTTAATAAAATCAATTAGTATAAATTTCACTCACGCTTAAAACTAAAATAAAAAATAGATCATTTATGGTTGATTTGTCCCCAATTTAGAATGAGTTGGGTGGAAAACAGTTATCTAATTAATTCAGTAAAATTTGGTTAAAATTGTGAGGTTTAATCTATAAAATTGATGATTTATGGTGATATTATTAAAAGTTATCAAGTTTAGAAGTTAATTTGATTATTTTTCCAATTTTATTATAACTCTTTTTTTTTTTTCTTGTTGTCTATGCTACTATATATTTATGGTCTATTTTCGATTTTCAAGTCCTACTATTTATATTGCAACAAAATTTATGAATACAATAATGTGTACACAATATAGAGGAGCTTTAATCTTGAGCCAAATATAGAATATGAGAAGACATCGTTCAAGTAGGTCGTACAGATTTGTATTTATCTTTCCCTTAATAAAAATAATTGAAAGACACCACACTTAAATCTATTATAATTTTCTTGTAAATAAAGGAATGAACAAATAGTAATTTTTTAGAAACAAAAGGGTTACTATTTTGGCAAATTAAAATAAAATAAATTCCGTTGCCGGGACTTCGTATTTCTCTTCTAACTAATTCCTCTTTCAATTCATAAACACTTTTCTTTACTTAAGAAAGGAGAGAGAATTTGTATTCTAGGGTTTTTGTGGTTTCCCAATTTCGCCAAAATTTTCTTCCGTAGATCCTGTGGTCAGTCAAGCAGCAATGGTGATTTCTCTTCCTTTGATTCCTTGGCTCCTAAAACTTGTCCACTAACTTTGTTCTTTTGGTCATGCTTTATCTTCTTCTTACTATTGGAAACTAAATTTTCTTCTTTAACAATTTGGGCAGTTTTTCCCTTTTATATATATTAAGTTCTGCGTCTGCCCTGTTTTATGATTTATTTTTTTATGATTCGAGTTTGCTGTTACATTTTCAATGGGCACTAAGCATTTTAGTTTTATCTCCTTTTTAATTGAAGATAACTGGAGAGATCGAGCTTTTGTTACTACTTCCCCTCCCCCATTAAGTACTAGAATTGGTGAAATATGATTACCCGTGTGGCATTGCTTGTTGCTACGGGAAAGAAAATGCAATGCAATGCAATAGGCCTTAGAATTTGCAAATGGATTCTGCTCACAAGGATTTTGGTTTGAATTTAGTGTTGAATTCTAAAGGTGGTTACTCTCTGTAGGATTTTAATTGTCGTGACTGTTTGATAGATTTCATGAATAATGCTCTATCAAAAGATTATTGCATTTATATTCAGTGTTAAAATGATGTCTTTCTTTTGCATAGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTAAGTATTTTGAAAATTCGATTTATGATTTATAATTTCGTATCTTGTATGGTAACCATAATTGGTTTTTGCAGGGAACTCTTGTTTTTCTGCTATCGTTTTCCATCATCATTATTCTGCATTTAGTCCAGTTTGAAGCCATTTACTGCTTACGTTTAGTTTCATTTTAGGGAAGTCATAGATGACCTTAAAGAATTAAAGAATTAGTAGCAAGTTACAAAATTTATTTGGATCAAGTGACTTCTGTAGAATTTAAACTATTAAACAATAGCTCAGGCTGGAATTTAAATATGGAAGTGATCCGTCAATATGTCTGTACAACTTAGTTGAAAATAAAAACAACTTAATTATTAATTTAAATTGTTGTTGATAAAAATTGATTCACGAAAATATCTGATGATAATTACATTTTATCCATATGTACGTTATAAAAAACATGGCATCATTGATTGATAGTTTTTGTTGTAAAGTACCTTAAGATATTAAGTGAACTGTGGCATGATGTACTCCAATGTCATCAACAAACCATTTTGCTTGTGTTATGAAGTTATCTGCATTCTATTTTCTTCTTCTCCTAACCTTGGAAGATAACAGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGAAAGGCAAGTAGTTGCCCTCTCTTTTTAGCCCAAGTTTTAGATTTCCTATTCGCATGTTCATGTTCCAATTATATGCTTCCCCATTGCAGTACGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCATACACTCTCAAGTAATGCTATACCTTTTGATTTTTTTTTTTTTCTTTTATTATCGTTCTTGTTATATAAATATAGGTTAAATTGTAAATTCTGTCCTCATAGTTTGGAAAAAGTTAGAATGTAGTTTTAAAAAAAGTAAGAATTTAGTCCTTATTTTTTGATAAAATCTAATAAATGATCTCTATGCTACGATAAAAAAACCTCGTAAAGAATCATTAATACAGTGAGGTGACTATTTAGGGTTTAATCAAAACATAGAATCTAAATTCCTACTATAAACCATATGATACATTTGATTTTGATGTTATTTTTGTGTACCTTTGACAGCACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAA

mRNA sequence

ATGCACTTATCAATTCGATGCACTTTTAGAAGTTTTATTGGCAAGAAGACAATTAATGAACGGAAGTACTTTTGGACTCTGATCTTTGTGGCCTTGCAACGATACAGCAGTACAGTCGTAAGCATCGCTAACTTGCACATTTCACTTGTCATGGAACCATTAGATGGGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGAAAGGCAAGTAGTTGCCCTCTCTTTTTAGCCCAATACGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCATACACTCTCAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAA

Coding sequence (CDS)

ATGCACTTATCAATTCGATGCACTTTTAGAAGTTTTATTGGCAAGAAGACAATTAATGAACGGAAGTACTTTTGGACTCTGATCTTTGTGGCCTTGCAACGATACAGCAGTACAGTCGTAAGCATCGCTAACTTGCACATTTCACTTGTCATGGAACCATTAGATGGGACGAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGGTGCCAGTCTGAGAAAACAGATCAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGTGGAAAGGCAAGTAGTTGCCCTCTCTTTTTAGCCCAATACGCAGTTAAGAGGAAGGCAGTTGGAATTTGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCTGGTGGTGCATACACTCTCAACACTGCTAGTGCTGTGACAGTGAGGAGCACTATTAGGAGGCTGAGAGAGCAGACTGAAAGTTAA

Protein sequence

MHLSIRCTFRSFIGKKTINERKYFWTLIFVALQRYSSTVVSIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*

Homology

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BLAST of Chy4G067520 vs. ExPASy Swiss-Prot
Match: Q9XHE4 (60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.6e-43
Identity = 90/101 (89.11%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 116
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          YAVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------YAVKRKA 61

Query: 117 VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           VGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 62  VGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Chy4G067520 vs. ExPASy Swiss-Prot
Match: P0DKK1 (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 88/101 (87.13%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 116
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          +AVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------FAVKRKA 61

Query: 117 VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Chy4G067520 vs. ExPASy Swiss-Prot
Match: P0DKK2 (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 88/101 (87.13%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 116
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK          +AVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----------FAVKRKA 61

Query: 117 VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of Chy4G067520 vs. ExPASy Swiss-Prot
Match: Q9ZRS8 (60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 116
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK          +AVKRKA
Sbjct: 2   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGK----------FAVKRKA 61

Query: 117 VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 157
           VGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 62  VGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of Chy4G067520 vs. ExPASy Swiss-Prot
Match: Q9SRK6 (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-41
Identity = 86/101 (85.15%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 116
           TKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGK          Y+VKRK 
Sbjct: 2   TKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGK----------YSVKRKV 61

Query: 117 VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of Chy4G067520 vs. ExPASy TrEMBL
Match: A0A0B0MUK9 (60S ribosomal L37a OS=Gossypium arboreum OX=29729 GN=F383_26613 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.9e-43
Identity = 96/117 (82.05%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 41  SIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKA 100
           S+ NLH S + E    TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK 
Sbjct: 18  SLQNLHFSCIKE----TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK- 77

Query: 101 SSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
                    YAVKRKAVGIWGCKDCGK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 78  ---------YAVKRKAVGIWGCKDCGKIKAGGAYTLNTASAVTVRSTIRRLREQTES 120

[Close]

BLAST of Chy4G067520 vs. ExPASy TrEMBL
Match: A0A103XDD5 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_026305 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.9e-42
Identity = 92/105 (87.62%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK----ASSCPLFLAQYAV 116
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK     + C     +YAV
Sbjct: 36  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFCKCVFFRYAV 95

Query: 117 KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 96  KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of Chy4G067520 vs. ExPASy TrEMBL
Match: A0A6A5MJL7 (Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00027465 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-42
Identity = 93/121 (76.86%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 41  SIANLHISLVMEP-----LDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCE 100
           +I  +H+ + M       L  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCE
Sbjct: 46  AICWIHVRIEMNEMMKKFLPKTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCE 105

Query: 101 FCGKASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 157
           FCGK         +YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT
Sbjct: 106 FCGKVGLSFFVNVEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 165

[Close]

BLAST of Chy4G067520 vs. ExPASy TrEMBL
Match: A0A5N5HBH2 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_024982 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 8.5e-42
Identity = 94/119 (78.99%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 39  VVSIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 98
           V + + LH    ++    TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG
Sbjct: 16  VPAASALHSQQTLQSTTMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 75

Query: 99  KASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           K          YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76  K----------YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 124

[Close]

BLAST of Chy4G067520 vs. ExPASy TrEMBL
Match: A0A445G6Z1 (60S ribosomal protein L37a OS=Glycine soja OX=3848 GN=D0Y65_045873 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 92/113 (81.42%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 45  LHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCP 104
           L++    +P + TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK     
Sbjct: 16  LNLCSAFDPENMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGK----- 75

Query: 105 LFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
                YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76  -----YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 118

[Close]

BLAST of Chy4G067520 vs. NCBI nr
Match: KHG03179.1 (60S ribosomal L37a [Gossypium arboreum])

HSP 1 Score: 184 bits (468), Expect = 3.47e-57
Identity = 96/117 (82.05%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 41  SIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKA 100
           S+ NLH S + E    TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK 
Sbjct: 18  SLQNLHFSCIKE----TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK- 77

Query: 101 SSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 157
                    YAVKRKAVGIWGCKDCGK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 78  ---------YAVKRKAVGIWGCKDCGKIKAGGAYTLNTASAVTVRSTIRRLREQTES 120

[Close]

BLAST of Chy4G067520 vs. NCBI nr
Match: WP_200848866.1 (50S ribosomal protein L37Ae, partial [Klebsiella pneumoniae])

HSP 1 Score: 181 bits (459), Expect = 5.91e-56
Identity = 94/119 (78.99%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 39  VVSIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 98
           V + + LH    ++    TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG
Sbjct: 2   VPAASALHSQQTLQSTTMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 61

Query: 99  KASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 157
           K          YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 62  K----------YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 110

[Close]

BLAST of Chy4G067520 vs. NCBI nr
Match: KVH88611.1 (hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus])

HSP 1 Score: 182 bits (461), Expect = 7.65e-56
Identity = 92/105 (87.62%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASS----CPLFLAQYAV 116
           TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK       C     +YAV
Sbjct: 36  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKLRKRINFCKCVFFRYAV 95

Query: 117 KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 157
           KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 96  KRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 140

[Close]

BLAST of Chy4G067520 vs. NCBI nr
Match: KAB2622800.1 (hypothetical protein D8674_024982 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 181 bits (459), Expect = 9.23e-56
Identity = 94/119 (78.99%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 39  VVSIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 98
           V + + LH    ++    TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG
Sbjct: 16  VPAASALHSQQTLQSTTMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCG 75

Query: 99  KASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 157
           K          YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 76  K----------YAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 124

[Close]

BLAST of Chy4G067520 vs. NCBI nr
Match: KAG7576786.1 (Ribosomal protein L37ae, partial [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 180 bits (456), Expect = 1.86e-55
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 35  YSSTVVSIANLHISLVMEPLDGTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFC 94
           ++ T  S A LH     +P   TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFC
Sbjct: 6   FAGTGTSSAFLH-----KPAKMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFC 65

Query: 95  EFCGKASSCPLFLAQYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQ 154
           EFCGK          YAVKRKAVGIWGCKDCGK+KAGGAYT+NTASAVTVRSTIRRLREQ
Sbjct: 66  EFCGK----------YAVKRKAVGIWGCKDCGKMKAGGAYTMNTASAVTVRSTIRRLREQ 113

Query: 155 TES 157
           TES
Sbjct: 126 TES 113

[Close]

BLAST of Chy4G067520 vs. TAIR 10
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-42
Identity = 86/101 (85.15%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 57  TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKA 116
           TKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGK          Y+VKRK 
Sbjct: 2   TKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGK----------YSVKRKV 61

Query: 117 VGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 158
           VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 62  VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

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BLAST of Chy4G067520 vs. TAIR 10
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-41
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 58  KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKASSCPLFLAQYAVKRKAV 117
           KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGK          Y VKRKAV
Sbjct: 3   KRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGK----------YGVKRKAV 62

Query: 118 GIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 157
           GIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 63  GIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

The following BLAST results are available for this feature:

BLAST of Chy4G067520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHE4	9.6e-43	89.11	60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1	[more]
P0DKK1	1.3e-42	87.13	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g06...	[more]
P0DKK2	1.3e-42	87.13	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g05...	[more]
Q9ZRS8	1.1e-41	87.00	60S ribosomal protein L37a OS=Pseudotsuga menziesii OX=3357 GN=RPL37A PE=3 SV=1	[more]
Q9SRK6	2.4e-41	85.15	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37AB...	[more]

BLAST of Chy4G067520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B0MUK9	5.9e-43	82.05	60S ribosomal L37a OS=Gossypium arboreum OX=29729 GN=F383_26613 PE=3 SV=1	[more]
A0A103XDD5	2.9e-42	87.62	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_026...	[more]
A0A6A5MJL7	5.0e-42	76.86	Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00027465 PE=3...	[more]
A0A5N5HBH2	8.5e-42	78.99	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A445G6Z1	1.4e-41	81.42	60S ribosomal protein L37a OS=Glycine soja OX=3848 GN=D0Y65_045873 PE=3 SV=1	[more]

BLAST of Chy4G067520 vs. NCBI nr


Match Name	E-value	Identity	Description
KHG03179.1	3.47e-57	82.05	60S ribosomal L37a [Gossypium arboreum]	[more]
WP_200848866.1	5.91e-56	78.99	50S ribosomal protein L37Ae, partial [Klebsiella pneumoniae]	[more]
KVH88611.1	7.65e-56	87.62	hypothetical protein Ccrd_026305 [Cynara cardunculus var. scolymus]	[more]
KAB2622800.1	9.23e-56	78.99	hypothetical protein D8674_024982 [Pyrus ussuriensis x Pyrus communis]	[more]
KAG7576786.1	1.86e-55	77.24	Ribosomal protein L37ae, partial [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of Chy4G067520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10950.1	1.7e-42	85.15	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	1.1e-41	84.85	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 57..157 e-value: 3.4E-41 score: 141.2
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 59..153 e-value: 1.0E-33 score: 115.2
IPR002674	Ribosomal protein L37ae	TIGRFAM	TIGR00280	TIGR00280	coord: 58..156 e-value: 1.2E-28 score: 97.2
IPR002674	Ribosomal protein L37ae	HAMAP	MF_00327	Ribosomal_L37Ae	coord: 59..137 score: 18.818157
None	No IPR available	PANTHER	PTHR48132	ZGC:171772	coord: 54..157
None	No IPR available	PANTHER	PTHR48132:SF2	60S RIBOSOMAL PROTEIN L37A-2	coord: 54..157
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 65..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G067520.1	Chy4G067520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome