Chy3G066120 (gene) Cucumber (hystrix) v1

Overview
NameChy3G066120
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionArabinogalactan peptide
LocationchrH03: 18228778 .. 18228966 (+)
RNA-Seq ExpressionChy3G066120
SyntenyChy3G066120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCCTCCCCAAACTTTCTCTCCTGGCTCTCATTGCCGTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGGCCGCCCTCCCCAAACTTTCTCTCCTGGCTCTCATTGCCGTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGGCCGCCCTCCCCAAACTTTCTCTCCTGGCTCTCATTGCCGTCATCTTCGCCCTTTCCTCCGTCGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCCATTGCTCCTTCGGCCGTCTCCGCTTGCCTTGCTGCTTTCCTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI*
Homology
BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.4e-17
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 1   MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 60
           MAAL K+SLLALIA+IFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MAALPKLSLLALIAVIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 60
          MAA+ K+S +AL+AV+FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A2Z6NC77 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 3  ALPKLSLLALIAVIFALSSVA-AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLR 62
          A   + LLA +AVIF++ S+A A +APAPSPASPATS++PS V+  +AA  ALAFGS LR
Sbjct: 2  ASTNMMLLATMAVIFSVISIASAADAPAPSPASPATSVSPSFVAGLVAAVAALAFGSNLR 61

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A2P5EL16 (Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 8  SLLALIAVIFALSSVA----AQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 63
          SL+ L+AVI  + SV     A EAPAPSPASPA++I+PS +SACLAA +AL FGS +R+
Sbjct: 9  SLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFGSAVRV 67

BLAST of Chy3G066120 vs. ExPASy TrEMBL
Match: A0A5N5HNG8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_032566 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.2e-04
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 1  MAALPKLSLLALIAVIFALSSV--AAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGS 60
          MA     S+LAL+AV+FA+ S   AAQE+PAPSP SPA SI PS VSA +A    LAFGS
Sbjct: 1  MAVSKASSVLALVAVLFAVLSAIGAAQESPAPSPTSPAASIYPSFVSALVAVVATLAFGS 60

Query: 61 TLRI 63
           LR+
Sbjct: 61 ALRV 64

BLAST of Chy3G066120 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.01e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 1   MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 60
           MAAL K+SLLALIA+IFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 62
           RI
Sbjct: 127 RI 128

BLAST of Chy3G066120 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.70e-17
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1   MAALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 60
           MA + + SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS VSAC+AAF+ALAFGSTL
Sbjct: 68  MAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTL 127

Query: 61  RI 62
           RI
Sbjct: 128 RI 129

BLAST of Chy3G066120 vs. NCBI nr
Match: KAG6585732.1 (CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 2.12e-12
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 8   SLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 62
           SL+ALIA+I A++SVAAQEAPAPSPASPA+SIAPS VSAC A F+AL  GSTLRI
Sbjct: 212 SLMALIALIIAVASVAAQEAPAPSPASPASSIAPSFVSACTAFFVALVLGSTLRI 266

BLAST of Chy3G066120 vs. NCBI nr
Match: KGN55315.1 (hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sativus] >BAA11428.1 CRG16 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 6.22e-09
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MAALPKLSLLALIAVIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 60
          MAA+ K+S +AL+AV+FA+ SVA   + E+PAP PASPA S+ PS   AC+ AFLAL FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

BLAST of Chy3G066120 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 1.53e-08
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 1  MAALPKLSLLALIAVIFALSSVA---AQEAPAPSPASPATSIAPSAVSACLAAFLALAFG 60
          MAA+ K S +AL+AV+F + SVA   + E+PAP+PASPATS+ PS   AC+ AF+AL FG
Sbjct: 24 MAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFVALVFG 83

BLAST of Chy3G066120 vs. TAIR 10
Match: AT5G11740.1 (arabinogalactan protein 15 )

HSP 1 Score: 42.4 bits (98), Expect = 1.6e-04
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 3  ALPKLSLLALIAVIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTLRI 62
          A+ K S++ L+ VI ++ + A  EAPAPSP S +++I+ S VSA +AA  AL FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LKU18.4e-1795.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1[more]
Q965042.5e-0557.81CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1[more]
A0A2Z6NC772.8e-0460.66Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=... [more]
A0A2P5EL163.6e-0459.32Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV... [more]
A0A5N5HNG86.2e-0459.38Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
Match NameE-valueIdentityDescription
KGN62403.12.01e-2395.16hypothetical protein Csa_018595 [Cucumis sativus][more]
KAG6598305.11.70e-1777.42hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585732.12.12e-1278.18CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subs... [more]
KGN55315.16.22e-0957.81hypothetical protein Csa_012200 [Cucumis sativus] >BAA08394.1 CRG16 [Cucumis sat... [more]
KAG7024335.11.53e-0856.25hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT5G11740.11.6e-0450.00arabinogalactan protein 15 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G066120.1Chy3G066120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane