Chy3G062610 (gene) Cucumber (hystrix) v1

Overview
NameChy3G062610
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 15826401 .. 15828141 (+)
RNA-Seq ExpressionChy3G062610
SyntenyChy3G062610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATATATTACTGTGATCAATGGTGGGTGGTGCATATAAGTAAGCAACAGAAGAGGAAAAAGAAGGTATTAATTAATCAGACATATCGGCTATTCATTGATAATTATGGCACTAGCTGTCACCAAATGCTGAGAGAGACAAGTTATCTGCAAACAGTGAGGAATTTTCTTTTATGAACATCAGTCCCACCTCCTGGAAATGTTGCTTTATGACAATTTCGGCGTTAAAAGTGGGGAAGCCTGAGTTGTGGATTCCAAAATTACTCTGAAGACTATTTTCTTACCAACGAAGATAATGCTGCTGATTGAAAATTATTCCTTATGAAGTATCATTTTTCTTCTAAGGCAATATTTAGTGCGTTGATGGTTCAATCATAATGTATTGGATTCTCATTCATTTGTGCATGAATTTTTGTACGAGTATGTTGAAATGTTCTTGGTGGGCAACAGTTATTTATTGTGCTGATTGAAACCCTGATGGGGACATTTCTTTTATGCTTTTAGATAATTTGTTAAATAAAGCTCAAGCTATTTTTTAACGATAGCATCCTTGAACAATATATAATAATAAAATATATATTTGTATATATTAATAAACGTTCTTTTTAGCTTTTCTTTGATATTGCATCTTCATGTCAGAATAAGTTCCCCATGTTTGGTTGCATTGATCATTGACACAAATCTGGTTTGCTGTTATATCAGTATAATATGCTCTCTTCTCATGCTATGCTGCTTCCTAAAACGCATGATGAGTAACAGTTAGTACTGAAATGGTTTTTTGAAGGGTAATATTCCTTTATTCTTTGGCCATCTTAAATGGAGCGAGCATAACGGTAGAATGAAATTCTTTTTAAGTGATAATATAATCTGTGCTTGAATTTAGAAAACAGTCACAGTGGGAATACAATATAGGCTTTTTCATGCATCTTACTATTGATGAAGAAAGCACGAGTGGTATCCAGTTAAATACTTTTATTTTTTTCTTTAAGGAGATGTTAGGTCTAAGCTGTTTAGAATCTTGTGATAGAATTGATCTTTCTCTTGAAAAGATAGAAGAAAGCTTGGTATGGAGGAACGATGGTGAATCTATTCCAGTGTGTGGAAGGGTATAATCTTTATTATTGGTGTCAAGTATCTGTCATGTCAACTTCTGTAGATCATTTTTGAAAAGAACTTGTATTAGCATTTATTATAATCTGTTTGCCAAGATGCCAAGAAAAATTCTTTATGATCTCCATTAGAACAACTTGGTATCGAGTAAATTTGCTTTCTGATTGATGAGGAAGAGAACAAATGCATGGGCATCAACATGTGATACTTTTAGCTCTGCTTGTCAACTTCTTTTGCTTCAATCCTGTTTGGGATCTGGAATTTGATGGACCCCCCAAAATTTTGCTTCCCCAAACTGCAAAAAATTTCTATCTGTAGTGTACTTACCGACCTGGTTTATTATTATTATTTATTTATTTATTTTGTTTATCTTTACTTACTTGAATTTATCTGTTTTTTGTTTTGTCCAGAGAGTTCTGCTGTTTGATACTTACCCTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAAGTAATATCTTATACAAAGGAAACAAATGAAAAACTGGTCCTTTTGTGCAGCTGCTGCTCAGAGTGATAAAGAGAAGTTTCTGGCTTGTTGATGATGGTAGGGCTGTGTGCCTCAGCTAA

mRNA sequence

ATGGCCATATATTACTGTGATCAATGGTGGGTGGTGCATATAAGTAAGCAACAGAAGAGGAAAAAGAAGGAGATGTTAGGTCTAAGCTGTTTAGAATCTTGTGATAGAATTGATCTTTCTCTTGAAAAGATAGAAGAAAGCTTGGTATGGAGGAACGATGGTGAATCTATTCCAGTGTGTGGAAGGAGAGTTCTGCTGTTTGATACTTACCCTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAACTGCTGCTCAGAGTGATAAAGAGAAGTTTCTGGCTTGTTGATGATGGTAGGGCTGTGTGCCTCAGCTAA

Coding sequence (CDS)

ATGGCCATATATTACTGTGATCAATGGTGGGTGGTGCATATAAGTAAGCAACAGAAGAGGAAAAAGAAGGAGATGTTAGGTCTAAGCTGTTTAGAATCTTGTGATAGAATTGATCTTTCTCTTGAAAAGATAGAAGAAAGCTTGGTATGGAGGAACGATGGTGAATCTATTCCAGTGTGTGGAAGGAGAGTTCTGCTGTTTGATACTTACCCTTCACCTACATCAACTGATAGAGCCAAAGACACATGGGATCTGACATGGGGTTGTGTTATGAGTTTCAGAGAACTGCTGCTCAGAGTGATAAAGAGAAGTTTCTGGCTTGTTGATGATGGTAGGGCTGTGTGCCTCAGCTAA

Protein sequence

MAIYYCDQWWVVHISKQQKRKKKEMLGLSCLESCDRIDLSLEKIEESLVWRNDGESIPVCGRRVLLFDTYPSPTSTDRAKDTWDLTWGCVMSFRELLLRVIKRSFWLVDDGRAVCLS*
Homology
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BLAST of Chy3G062610 vs. NCBI nr
Match: KAG6598753.1 (hypothetical protein SDJN03_08531, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 2.09e-12
Identity = 39/75 (52.00%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 62  RRVLLFDTYPSPTSTDRAKDTWDLTWGCVMSFRE-------------------LLLRVIK 117
           RRVLL DTY SP STDRAKDTWDLT  CVMSFR+                   LLL ++ 
Sbjct: 106 RRVLLLDTYLSPISTDRAKDTWDLTLDCVMSFRDVISYTKEKLVLVQQQLLLLLLLLLLL 165

The following BLAST results are available for this feature:
BLAST of Chy3G062610 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G062610 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G062610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598753.12.09e-1252.00hypothetical protein SDJN03_08531, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Chy3G062610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G062610.1Chy3G062610.1mRNA