Chy3G060550 (gene) Cucumber (hystrix) v1

Overview
NameChy3G060550
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRibosomal protein S19
LocationchrH03: 14154977 .. 14156808 (-)
RNA-Seq ExpressionChy3G060550
SyntenyChy3G060550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAATCTTGCAAAGTCCAACAACAATAAGCCCAATTTTTTAACTAAAAAAAAAAAGAAAAGAAAAGAAAAAAGGAAACCCTAGCTTCCACAATTCTTTCAACTTCTTCCTCAACTCTCACGTCTCTGCCTTTCACAAATCTCTAAACTTCATTCTTCACGGTGTAATCTTTCTCTTCGTTCATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGTCGAAAATGAAGAAGAATGTAGAACCGCTTATGAACAAGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTCTACAATGGAAAAAATTTTATTCGTTGTAAGATCACTGAAGAAAGGGTTGGCCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAAAATTGCGAGATCAAATAGTGCACCGGTAAAAAGAGGGGGGAAAAAGTAAAGTTGAAGCGCGTATGCCATTTCGTATTCACCTTTTCTTTCTTATTCTCAATTCAAGGTTAGTAAAATCAGTCTGGTGCTGTCATTGTAGTTGTTTTTTTCTATTTTGCGCCACAGACTGTCACTGTTTTCGTTTGATATCGCCACAGCTGTTTGTTGGTTTCTGTATGATTCTGGTATACATTTCTATTTCAAATTCTGAATGACTCTGTTCTACCATGGTTAGATAGAACTATCTCGAGATATTGTGATAATAACAATTTTTTATCTTGAAATTCTGAAATGATAATGACGTTCATGTTACAAGATAGCCTTTTTTTTTTAATTTGTTGTTAATACAATAAATTTTCCTCGTTAATTCATTCATATACTTGGACTTTTCATCATTTTTCGTTTCTTCAAACCTCTATCTTTAAATTTTTAACAAAATTCTGAAAATACAAGTTATTTAAAAACTACGTTTTTTCGGTATTCACAAACTGTACATAGTTTCTATAAACGTATACCCAAACGAAGTAAAAATCAGAAACAAAAAATGAAATGGTTATTGAAAGAACCATAATTTTAAAACAGAATTTCTTTTTCAAGTTCAACAAAGTAAAGGGTGATCCTCCTCTTCACTCTAACTATAAGTAATCATATGCATTGAAAGACCCTTTTTCAACAATGCACAAACAAATTTGTAGTCATTTGAGCAAGAAGAATACACACAAGGCATTTGGGACTATAGTCATTGAAGACTATGATAACAACCTATTAGTACAATAAAAACACTATTATTTACTATTTATTATAGTTTTTACCCTTTTACATCTGTAGTGTTTACCGTTTTCATCAAATACATACTCACAAACTATTGTAATCAACTCACTCCTTCCCTTGATGTGTATTTATCTTCGTGCAACCTTTCCAAGCGATCAATGTTCCATCTAAAATTACTGTCCGACACACATATTAAAAATAGTAAATTTCTATTTTTAATATTTTTAACACAAGGGTACTTGGCTTGAAATTTGTTCTCTCTCACTGAGAACACCGATTTCTTTCTCAGAGGTGATGACCGCCTCGTTCTTGCTCATCTTGGCATAGCTCTGCTCGCATTCTTATTGGCGAATATGGGGGTATGAGATATGATGGGTCGGTGCCATTGTAAGCCATCAGTTGTCGAGGTGTAAGTTCCATTGGCTCCGGGGGAAATTGATTAGAATGAGGAACTGTAGCTTCAGTTGAAATGGTGAATTCAACCACTTTTCATATTCATCCTCGATCGAATGGGGAGAAAAAGCAAAGGATTTTGGAAGTTTCCCATTTAGAATAATTTGACTTTATAACCCTGCACTAACAAGAAATACTTATTGACGCATC

mRNA sequence

AATCAATCTTGCAAAGTCCAACAACAATAAGCCCAATTTTTTAACTAAAAAAAAAAAGAAAAGAAAAGAAAAAAGGAAACCCTAGCTTCCACAATTCTTTCAACTTCTTCCTCAACTCTCACGTCTCTGCCTTTCACAAATCTCTAAACTTCATTCTTCACGGTGTAATCTTTCTCTTCGTTCATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGTCGAAAATGAAGAAGAATGTAGAACCGCTTATGAACAAGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTCTACAATGGAAAAAATTTTATTCGTTGTAAGATCACTGAAGAAAGGGTTGGCCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAAAATTGCGAGATCAAATAGTGCACCGGTAAAAAGAGGGGGGAAAAAGTAAAGTTGAAGCGCGTATGCCATTTCGTATTCACCTTTTCTTTCTTATTCTCAATTCAAGGTTAGGTACTTGGCTTGAAATTTGTTCTCTCTCACTGAGAACACCGATTTCTTTCTCAGAGGTGATGACCGCCTCGTTCTTGCTCATCTTGGCATAGCTCTGCTCGCATTCTTATTGGCGAATATGGGGGTATGAGATATGATGGGTCGGTGCCATTGTAAGCCATCAGTTGTCGAGGTGTAAGTTCCATTGGCTCCGGGGGAAATTGATTAGAATGAGGAACTGTAGCTTCAGTTGAAATGGTGAATTCAACCACTTTTCATATTCATCCTCGATCGAATGGGGAGAAAAAGCAAAGGATTTTGGAAGTTTCCCATTTAGAATAATTTGACTTTATAACCCTGCACTAACAAGAAATACTTATTGACGCATC

Coding sequence (CDS)

AATCAATCTTGCAAAGTCCAACAACAATAAGCCCAATTTTTTAACTAAAAAAAAAAAGAAAAGAAAAGAAAAAAGGAAACCCTAGCTTCCACAATTCTTTCAACTTCTTCCTCAACTCTCACGTCTCTGCCTTTCACAAATCTCTAAACTTCATTCTTCACGGTGTAATCTTTCTCTTCGTTCATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGTCGAAAATGAAGAAGAATGTAGAACCGCTTATGAACAAGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTCTACAATGGAAAAAATTTTATTCGTTGTAAGATCACTGAAGAAAGGGTTGGCCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAAAATTGCGAGATCAAATAGTGCACCGGTAAAAAGAGGGGGGAAAAAGTAAAGTTGAAGCGCGTATGCCATTTCGTATTCACCTTTTCTTTCTTATTCTCAATTCAAGGTTAGGTACTTGGCTTGAAATTTGTTCTCTCTCACTGAGAACACCGATTTCTTTCTCAGAGGTGATGACCGCCTCGTTCTTGCTCATCTTGGCATAGCTCTGCTCGCATTCTTATTGGCGAATATGGGGGTATGAGATATGATGGGTCGGTGCCATTGTAAGCCATCAGTTGTCGAGGTGTAAGTTCCATTGGCTCCGGGGGAAATTGATTAGAATGAGGAACTGTAGCTTCAGTTGAAATGGTGAATTCAACCACTTTTCATATTCATCCTCGATCGAATGGGGAGAAAAAGCAAAGGATTTTGGAAGTTTCCCATTTAGAATAATTTGACTTTATAACCCTGCACTAACAAGAAATACTTATTGACGCATC

Protein sequence

NQSCKVQQQ*AQFFN*KKKEKKRKKETLASTILSTSSSTLTSLPFTNL*TSFFTV*SFSSFMSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK*S*SAYAISYSPFLSYSQFKVRYLA*NLFSLTENTDFFLRGDDRLVLAHLGIALLAFLLANMGV*DMMGRCHCKPSVVEV*VPLAPGEID*NEEL*LQLKW*IQPLFIFILDRMGRKSKGFWKFPI*NNLTL*PCTNKKYLLTHX
Homology
[Close]
BLAST of Chy3G060550 vs. ExPASy Swiss-Prot
Match: P27527 (Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-29
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  + L N+KIWSR S ILPEFV   VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK 156
           TE +VGHKFGEFA TRKR+ +R+N  P ++ GKK
Sbjct: 61  TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKRGKK 94

[Close]
BLAST of Chy3G060550 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 8.0e-22
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RS+WK  FVDAFL K KKN    +N+KIWSR S ILPE+V S VR+YNGK  +RCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK-KKNA--ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 122 TEERVGHKFGEFAMTRKRK 141
           TE +VGHKFGEFA TRK K
Sbjct: 191 TEGKVGHKFGEFAFTRKVK 206

[Close]
BLAST of Chy3G060550 vs. ExPASy Swiss-Prot
Match: P26874 (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 PE=3 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 5.4e-18
Identity = 48/86 (55.81%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 65  RSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEE 124
           RSIWKG FVD  L K KK     +  +IWSR S ILP+FVG   ++YNGK F+  KITEE
Sbjct: 3   RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 125 RVGHKFGEFAMTRKRKIARSNSAPVK 151
            VGHKFGEFA TRK       + P K
Sbjct: 63  MVGHKFGEFASTRKTSSLGKRALPSK 83

[Close]
BLAST of Chy3G060550 vs. ExPASy Swiss-Prot
Match: P50893 (Ribosomal protein S19, mitochondrial OS=Tetraselmis subcordiformis OX=3161 GN=RPS19 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 65  RSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEE 124
           R+IWKG F+D F    +KN     N KI+SR S++ P+F+G  V +YNG  +I  KI E+
Sbjct: 3   RAIWKGPFIDPFF--FRKNGSSNSNNKIYSRRSVVSPKFIGREVEIYNGHKWITIKIKED 62

Query: 125 RVGHKFGEFAMTRKRKIARSNS 147
            +GHKFGEFA TRK  I +  +
Sbjct: 63  MIGHKFGEFAFTRKATIHKKKT 82

[Close]
BLAST of Chy3G060550 vs. ExPASy Swiss-Prot
Match: Q2RQW4 (30S ribosomal protein S19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=rpsS PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-14
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0 

Query: 65  RSIWKGGFVDAF-LSKMKKNVEPLMNK--KIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 124
           RS+WKG F+D + L+K +K      N+  KIWSR S I+P+FVG T  VYNG+ F+   +
Sbjct: 3   RSVWKGPFIDGYLLNKAEKARSSGRNEVIKIWSRRSTIMPQFVGLTFGVYNGQKFVPVLV 62

Query: 125 TEERVGHKFGEFAMTR 138
           TE+ VGHKFGEFA TR
Sbjct: 63  TEQMVGHKFGEFAPTR 78

[Close]
BLAST of Chy3G060550 vs. ExPASy TrEMBL
Match: A0A0A0LPU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382770 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 3.7e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI
Sbjct: 1   MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK 156
           TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK
Sbjct: 61  TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK 94

[Close]
BLAST of Chy3G060550 vs. ExPASy TrEMBL
Match: A0A5A7VCX8 (Ribosomal protein S19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001900 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-43
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           MSPRSIWKGGFVDAFL KMKKNVEPLMN+KIWSRGSMILPEFVGSTVRVYNGKNF+RCKI
Sbjct: 1   MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK 156
           TE RVGHKFGEFAMTRKR+IARSNSAP KRGGKK
Sbjct: 61  TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 94

[Close]
BLAST of Chy3G060550 vs. ExPASy TrEMBL
Match: D5I3D4 (Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-30
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGG 154
           TE RVGHKFGEFA+TRKR+++R+N  P K+GG
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of Chy3G060550 vs. ExPASy TrEMBL
Match: D5I3F0 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK 155
           TE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]
BLAST of Chy3G060550 vs. ExPASy TrEMBL
Match: D5I3G6 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK 155
           TE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]
BLAST of Chy3G060550 vs. NCBI nr
Match: KAA0064877.1 (ribosomal protein S19 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 3.02e-55
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           MSPRSIWKGGFVDAFL KMKKNVEPLMN+KIWSRGSMILPEFVGSTVRVYNGKNF+RCKI
Sbjct: 1   MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK 155
           TE RVGHKFGEFAMTRKR+IARSNSAP KRGGKK
Sbjct: 61  TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 94

[Close]
BLAST of Chy3G060550 vs. NCBI nr
Match: KAE8652214.1 (hypothetical protein Csa_022320 [Cucumis sativus])

HSP 1 Score: 179 bits (453), Expect = 6.89e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI
Sbjct: 1   MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAP 148
           TEERVGHKFGEFAMTRKRKIARSNSAP
Sbjct: 61  TEERVGHKFGEFAMTRKRKIARSNSAP 87

[Close]
BLAST of Chy3G060550 vs. NCBI nr
Match: YP_003587264.1 (ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 141 bits (355), Expect = 2.02e-38
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGG 153
           TE RVGHKFGEFA+TRKR+++R+N  P K+GG
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]
BLAST of Chy3G060550 vs. NCBI nr
Match: YP_003587380.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 138 bits (348), Expect = 3.34e-37
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK 154
           TE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]
BLAST of Chy3G060550 vs. NCBI nr
Match: YP_003587364.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 138 bits (348), Expect = 3.77e-37
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 122 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK 154
           TE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]
BLAST of Chy3G060550 vs. TAIR 10
Match: AT5G47320.1 (ribosomal protein S19 )

HSP 1 Score: 105.9 bits (263), Expect = 5.7e-23
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 62  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 121
           M  RS+WK  FVDAFL K KKN    +N+KIWSR S ILPE+V S VR+YNGK  +RCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK-KKNA--ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 122 TEERVGHKFGEFAMTRKRK 141
           TE +VGHKFGEFA TRK K
Sbjct: 191 TEGKVGHKFGEFAFTRKVK 206

[Close]
BLAST of Chy3G060550 vs. TAIR 10
Match: ATCG00820.1 (ribosomal protein S19 )

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-07
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 65  RSIWKGGFVDAFLSKMKKNVEPLMNKKI---WSRGSMILPEFVGSTVRVYNGKNFIRCKI 124
           RS+ K  FV   L +  + +     K+I   WSR S I+P  +G T+ ++NG+  +   I
Sbjct: 3   RSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYI 62

Query: 125 TEERVGHKFGEFAMT 137
            +  VGHK GEF+ T
Sbjct: 63  IDLMVGHKLGEFSPT 77

[Close]
BLAST of Chy3G060550 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-05
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 0 

Query: 75  AFLSKMKKNVEPLMNKK-----IWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHK 134
           A + K++K  E    +K        R  +I+PE +GS + VYNGK F + +I  E +GH 
Sbjct: 62  ALIKKLRKKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 121

Query: 135 FGEFAMTRKRKIARSNSAPVKRG 153
             EF+++ K         PVK G
Sbjct: 122 LAEFSISYK---------PVKHG 135

[Close]
BLAST of Chy3G060550 vs. TAIR 10
Match: AT5G09490.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 95  RGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRK 139
           R  +I+PE +GS + VYNGK F + +I  E +GH   EF++T K
Sbjct: 88  RNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYK 131

[Close]
BLAST of Chy3G060550 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-05
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 0 

Query: 95  RGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRG 153
           R  +I+PE +GS + VYNGK F + +I  E +GH   EF+++ K         PVK G
Sbjct: 86  RNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYK---------PVKHG 134

The following BLAST results are available for this feature:
BLAST of Chy3G060550 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P275271.8e-2965.96Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV... [more]
P396978.0e-2267.0940S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P268745.4e-1855.81Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 P... [more]
P508934.2e-1547.56Ribosomal protein S19, mitochondrial OS=Tetraselmis subcordiformis OX=3161 GN=RP... [more]
Q2RQW41.2e-1453.9530S ribosomal protein S19 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.... [more]
BLAST of Chy3G060550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU93.7e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382770 PE=3 SV=1[more]
A0A5A7VCX81.7e-4393.62Ribosomal protein S19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
D5I3D41.7e-3070.65Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1[more]
D5I3F01.1e-2968.82Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1[more]
D5I3G61.1e-2968.82Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1[more]
BLAST of Chy3G060550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0064877.13.02e-5593.62ribosomal protein S19 [Cucumis melo var. makuwa][more]
KAE8652214.16.89e-53100.00hypothetical protein Csa_022320 [Cucumis sativus][more]
YP_003587264.12.02e-3870.65ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Cit... [more]
YP_003587380.13.34e-3768.82ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurb... [more]
YP_003587364.13.77e-3768.82ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurb... [more]
BLAST of Chy3G060550 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47320.15.7e-2367.09ribosomal protein S19 [more]
ATCG00820.14.4e-0736.00ribosomal protein S19 [more]
AT1G04270.21.4e-0533.73cytosolic ribosomal protein S15 [more]
AT5G09490.11.8e-0545.45Ribosomal protein S19 family protein [more]
AT5G09500.13.1e-0539.66Ribosomal protein S19 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 88..107
score: 48.95
coord: 108..120
score: 41.94
coord: 120..135
score: 56.65
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 61..135
e-value: 1.0E-24
score: 86.1
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 53..149
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 59..147
score: 19.837782
IPR023575Ribosomal protein S19/S15, superfamilyGENE3D3.30.860.1030s Ribosomal Protein S19; Chain Acoord: 58..146
e-value: 3.2E-26
score: 93.1
IPR023575Ribosomal protein S19/S15, superfamilySUPERFAMILY54570Ribosomal protein S19coord: 61..136
IPR005732Ribosomal protein S19, bacterial-typeTIGRFAMTIGR01050TIGR01050coord: 60..142
e-value: 1.4E-27
score: 93.8
NoneNo IPR availablePANTHERPTHR11880:SF3640S RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 53..149
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 108..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G060550.1Chy3G060550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome