Chy3G054650 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G054650
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Prolamin_like domain-containing protein
Location	chrH03: 6729375 .. 6729692 (-)
RNA-Seq Expression	Chy3G054650
Synteny	Chy3G054650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACGTTGACGATGAAAATTCACCGATATGGAATGGGTGGGTGAACGAAGATAGAGCAAATCTACGACCATGTTTGGATGTAATGACGAGTGCAGACTGTCAAGTACAACTTTACTATTTCTACTTCAATATCAGGAAAAATGAGTTGGAAATATCTTGTTGTGCCTTCGTCAAAATCATGGGAAAATACTGTGCTGATGTTTTCACTAGTTGGTTCAATTTCCCTGGTTTCGAAGTCTACAAACCTAATCCTATGATAGTATACAACAATTGTATTGGAAGACTCGATGCTCCCCCACCAACACCATTTTAA

mRNA sequence

ATGGCGGACGTTGACGATGAAAATTCACCGATATGGAATGGGTGGGTGAACGAAGATAGAGCAAATCTACGACCATGTTTGGATGTAATGACGAGTGCAGACTGTCAAGTACAACTTTACTATTTCTACTTCAATATCAGGAAAAATGAGTTGGAAATATCTTGTTGTGCCTTCGTCAAAATCATGGGAAAATACTGTGCTGATGTTTTCACTAGTTGGTTCAATTTCCCTGGTTTCGAAGTCTACAAACCTAATCCTATGATAGTATACAACAATTGTATTGGAAGACTCGATGCTCCCCCACCAACACCATTTTAA

Coding sequence (CDS)

ATGGCGGACGTTGACGATGAAAATTCACCGATATGGAATGGGTGGGTGAACGAAGATAGAGCAAATCTACGACCATGTTTGGATGTAATGACGAGTGCAGACTGTCAAGTACAACTTTACTATTTCTACTTCAATATCAGGAAAAATGAGTTGGAAATATCTTGTTGTGCCTTCGTCAAAATCATGGGAAAATACTGTGCTGATGTTTTCACTAGTTGGTTCAATTTCCCTGGTTTCGAAGTCTACAAACCTAATCCTATGATAGTATACAACAATTGTATTGGAAGACTCGATGCTCCCCCACCAACACCATTTTAA

Protein sequence

MADVDDENSPIWNGWVNEDRANLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKIMGKYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTPF*

Homology

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BLAST of Chy3G054650 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 81/107 (75.70%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MADVDDE-NSPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAF 60
           MADVDD+ NSPIWNGWV+EDRA NLRPCLD+M SA CQVQLY +YFNI K EL++ CC F
Sbjct: 29  MADVDDDYNSPIWNGWVDEDRASNLRPCLDMMKSAKCQVQLYNYYFNISKKELDLQCCVF 88

Query: 61  VKIMGKYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTPF 106
           VKIMGKYCA  F  W+ FPG EVY+PNPMIVYNNC+GRL A PPTPF
Sbjct: 89  VKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVYNNCVGRLQALPPTPF 135

[Close]

BLAST of Chy3G054650 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 5   DDENSPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKIMG 64
           +D NSPIW+GWV+EDR   LRPCLD M SA CQV+LY +YFNI K EL+++CC FVK+MG
Sbjct: 24  EDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFNISKKELDLNCCVFVKVMG 83

Query: 65  KYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTPF 106
           K CA  FT W+ FPG E+Y+PNPM VYNNCI RLDAPPP PF
Sbjct: 84  KKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Chy3G054650 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 5   DDENSPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKIMG 64
           +D NS IWN W++EDRA  LRPCLD M SA CQV+LY +YFNI K EL+++CC FVK+MG
Sbjct: 31  EDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKCQVELYNYYFNISKKELDLNCCVFVKVMG 90

Query: 65  KYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTP 105
           K CA  FT W+ FPG E+Y+PNPM VYNNC  RL APPPTP
Sbjct: 91  KKCAQAFTFWYQFPGLEIYEPNPMKVYNNCATRLSAPPPTP 131

[Close]

BLAST of Chy3G054650 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 4   VDDEN-SPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKI 63
           VDD   S IW+ W++EDRA  L PCL +M S  CQV+LY +YFNI K EL++SCC +V  
Sbjct: 30  VDDNGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQVELYNYYFNISKKELDLSCCVYVNY 89

Query: 64  MGKYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTP 105
           MGK CA  F  WF+FP  E  KPNPM VYNNC  RL  P PTP
Sbjct: 90  MGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKRLTFPAPTP 132

[Close]

BLAST of Chy3G054650 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 4   VDDEN-SPIWNGWVNEDRAN-LRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKI 63
           +DD   S IW+GW+++DRA  L  CL +M S  CQV+LY +YFN  K E+++SCC +V  
Sbjct: 33  IDDNGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYYFNKSKKEVDLSCCVYVNY 92

Query: 64  MGKYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAP-PPT 104
           +G+ CA  F SWF+  GF+  KPNPM +YNNC  RL  P PPT
Sbjct: 93  IGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAPPT 135

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BLAST of Chy3G054650 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 1.01e-57
Identity = 81/107 (75.70%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MADVDDE-NSPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAF 60
           MADVDD+ NSPIWNGWV+EDRA NLRPCLD+M SA CQVQLY +YFNI K EL++ CC F
Sbjct: 29  MADVDDDYNSPIWNGWVDEDRASNLRPCLDMMKSAKCQVQLYNYYFNISKKELDLQCCVF 88

Query: 61  VKIMGKYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTPF 105
           VKIMGKYCA  F  W+ FPG EVY+PNPMIVYNNC+GRL A PPTPF
Sbjct: 89  VKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVYNNCVGRLQALPPTPF 135

[Close]

BLAST of Chy3G054650 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 1.52e-50
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 5   DDENSPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKIMG 64
           +D NSPIW+GWV+EDR   LRPCLD M SA CQV+LY +YFNI K EL+++CC FVK+MG
Sbjct: 24  EDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFNISKKELDLNCCVFVKVMG 83

Query: 65  KYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTPF 105
           K CA  FT W+ FPG E+Y+PNPM VYNNCI RLDAPPP PF
Sbjct: 84  KKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

[Close]

BLAST of Chy3G054650 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158 bits (399), Expect = 1.69e-47
Identity = 68/102 (66.67%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 5   DDENSPIWNGWVNEDRA-NLRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKIMG 64
           DD NSPIW+ WV+EDR  NLRPCLD+M SA CQV+LY +YFNI K EL+++CC FVK+MG
Sbjct: 24  DDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYYFNISKKELDLNCCVFVKVMG 83

Query: 65  KYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAPPPTPF 105
           K CA  F  WF FP FEV++ NPM VY NC+GRLDA PP PF
Sbjct: 84  KRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPAPF 125

[Close]

BLAST of Chy3G054650 vs. NCBI nr
Match: KAG6575254.1 (hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138 bits (347), Expect = 1.32e-39
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 5   DDENSPIWNGWVNEDRAN-LRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVKIMG 64
           DD NSPIW+ W++EDRA  LRPCL++M SA CQVQLY  YFN+ K EL+++CC F+++MG
Sbjct: 21  DDYNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNYFNLSKEELDLNCCVFIQVMG 80

Query: 65  KYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDAP-PPTPF 105
           K C   F  WFN+P FEVYKPNPM +Y  CI RL +  PP P 
Sbjct: 81  KKCTLNFAGWFNYPIFEVYKPNPMKLYKRCIARLSSSIPPMPL 123

[Close]

BLAST of Chy3G054650 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136 bits (343), Expect = 7.24e-39
Identity = 61/99 (61.62%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 2   ADVDDENSPIWNGWVNEDRAN-LRPCLDVMTSADCQVQLYYFYFNIRKNELEISCCAFVK 61
           ADVD  NSPIW+ W++EDRA  LRPCL++M SA CQVQLY  YFN+ K EL+++CC FVK
Sbjct: 29  ADVD-YNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNYFNLSKEELDLNCCVFVK 88

Query: 62  IMGKYCADVFTSWFNFPGFEVYKPNPMIVYNNCIGRLDA 99
           +MGK CA  F  WF++P FEVYKPNPM +Y  C+ RL +
Sbjct: 89  VMGKNCALDFAGWFDYPIFEVYKPNPMNLYKRCVARLSS 126

The following BLAST results are available for this feature:

BLAST of Chy3G054650 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G054650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZR1	3.0e-43	75.70	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3C280	1.1e-37	68.63	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	3.0e-35	66.34	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]
A0A0A0KQ41	1.4e-27	58.25	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	1.7e-22	51.46	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of Chy3G054650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046841.1	1.01e-57	75.70	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAA0046835.1	1.52e-50	68.63	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6578867.1	1.69e-47	66.67	hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575254.1	1.32e-39	59.22	hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575249.1	7.24e-39	61.62	hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy3G054650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 26..93 e-value: 4.0E-6 score: 26.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G054650.1	Chy3G054650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity