Chy3G054360 (gene) Cucumber (hystrix) v1

Overview
NameChy3G054360
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 6461993 .. 6462439 (-)
RNA-Seq ExpressionChy3G054360
SyntenyChy3G054360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGACCTTTCTTTATTCTACTACTTCCTTCTCATCTTCTTCCTCTCTTACACGACGCTTCCCCAACTACCATTTTCGTTTAAGAAATTCCCCCATCTTCCTTCACAATTGGTCTCTTTCTTCTTTTCTCTGTCATTCTCTGTTCATTATTGGCAGAATAGGCTTTGTGTTGTTAATCCCAGCTCTTACTCTATTTTTTATCTTCTTTGCTGCTGCTTCTGCTGCATTTTAGTTTTTGTTGGAATGACGGTTTTGCTAGATTTTGGACGTGGGGTTTGTGTTCTTGTGTTTGACTGTGGTTTTTACCATCTGGGATTTCGTGGAATGAGTTTCTAGTGGAGTTTCGAACTTGGGTTTCTCTGGGTTGTGTTGTTCTGGTTCGATTCCTCCATCTGGGTATTTCTTGAATGTGTTGGTGTGTGAGCTTCTAGCAGAGATTTGA

mRNA sequence

ATGGCTTTGACCTTTCTTTATTCTACTACTTCCTTCTCATCTTCTTCCTCTCTTACACGACGCTTCCCCAACTACCATTTTCGTTTAAGAAATTCCCCCATCTTCCTTCACAATTGGTCTCTTTCTTCTTTTCTCTGTCATTCTCTGTTCATTATTGGCAGAATAGGCTTTGTGTTGTTAATCCCAGCTCTTACTCTATTTTTTATCTTCTTTGCTGCTGCTTCTGCTGCATTTTATGGAGTTTCGAACTTGGGTTTCTCTGGGTTGTGTTGTTCTGGTTCGATTCCTCCATCTGGGTATTTCTTGAATGTGTTGGTGTGTGAGCTTCTAGCAGAGATTTGA

Coding sequence (CDS)

ATGGCTTTGACCTTTCTTTATTCTACTACTTCCTTCTCATCTTCTTCCTCTCTTACACGACGCTTCCCCAACTACCATTTTCGTTTAAGAAATTCCCCCATCTTCCTTCACAATTGGTCTCTTTCTTCTTTTCTCTGTCATTCTCTGTTCATTATTGGCAGAATAGGCTTTGTGTTGTTAATCCCAGCTCTTACTCTATTTTTTATCTTCTTTGCTGCTGCTTCTGCTGCATTTTATGGAGTTTCGAACTTGGGTTTCTCTGGGTTGTGTTGTTCTGGTTCGATTCCTCCATCTGGGTATTTCTTGAATGTGTTGGTGTGTGAGCTTCTAGCAGAGATTTGA

Protein sequence

MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFLCHSLFIIGRIGFVLLIPALTLFFIFFAAASAAFYGVSNLGFSGLCCSGSIPPSGYFLNVLVCELLAEI*
Homology
[Close]
BLAST of Chy3G054360 vs. ExPASy TrEMBL
Match: A0A0A0K8L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046430 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 1   MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFLCHSLFIIGRIGFVLL 60
           MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFL HSLFI GRIGFVLL
Sbjct: 1   MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFLNHSLFITGRIGFVLL 60

Query: 61  IPALTLFFIFFAAASAAFYGVSNLGFSGLCCSGSIPPSGYFLNVLVCELLAEI 114
           IPALTL FIFFAAASAAF+GV NLGFSGLCCSGSIPPSGYFLNVLVCELLAEI
Sbjct: 61  IPALTLLFIFFAAASAAFHGVLNLGFSGLCCSGSIPPSGYFLNVLVCELLAEI 113

[Close]
BLAST of Chy3G054360 vs. NCBI nr
Match: KGN46065.1 (hypothetical protein Csa_005338 [Cucumis sativus])

HSP 1 Score: 209 bits (532), Expect = 8.47e-68
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 1   MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFLCHSLFIIGRIGFVLL 60
           MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFL HSLFI GRIGFVLL
Sbjct: 1   MALTFLYSTTSFSSSSSLTRRFPNYHFRLRNSPIFLHNWSLSSFLNHSLFITGRIGFVLL 60

Query: 61  IPALTLFFIFFAAASAAFYGVSNLGFSGLCCSGSIPPSGYFLNVLVCELLAEI 113
           IPALTL FIFFAAASAAF+GV NLGFSGLCCSGSIPPSGYFLNVLVCELLAEI
Sbjct: 61  IPALTLLFIFFAAASAAFHGVLNLGFSGLCCSGSIPPSGYFLNVLVCELLAEI 113

The following BLAST results are available for this feature:
BLAST of Chy3G054360 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G054360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8L21.0e-4995.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046430 PE=4 SV=1[more]
BLAST of Chy3G054360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46065.18.47e-6895.58hypothetical protein Csa_005338 [Cucumis sativus][more]
BLAST of Chy3G054360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G054360.1Chy3G054360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane