Chy3G054260 (gene) Cucumber (hystrix) v1

Overview
NameChy3G054260
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 6393677 .. 6394214 (+)
RNA-Seq ExpressionChy3G054260
SyntenyChy3G054260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAGAGTTTGCGACATTGTGAGAGTACTACAAAATAGTATGATAATCGGAGAGCATCTAGAGATAAGATTAAAGTTAGTACTATGTCAGGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGATATGCATTACAGATTTGAAACAAGAAATAGAAAGATTGAATGGAATTGCTATAGAATTCCAAAATACATTACATGAACAAGCCACAACATCTCAAAAGATCGTTGTGGTGGTCGAGGTTTTACAACAACCAGTTAAAAAATAC

mRNA sequence

ATTAAGAGTTTGCGACATTGTGAGAGTACTACAAAATAGTATGATAATCGGAGAGCATCTAGAGATAAGATTAAAGTTAGTACTATGTCAGGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGATATGCATTACAGATTTGAAACAAGAAATAGAAAGATTGAATGGAATTGCTATAGAATTCCAAAATACATTACATGAACAAGCCACAACATCTCAAAAGATCGTTGTGGTGGTCGAGGTTTTACAACAACCAGTTAAAAAATAC

Coding sequence (CDS)

ATTAAGAGTTTGCGACATTGTGAGAGTACTACAAAATAGTATGATAATCGGAGAGCATCTAGAGATAAGATTAAAGTTAGTACTATGTCAGGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGATATGCATTACAGATTTGAAACAAGAAATAGAAAGATTGAATGGAATTGCTATAGAATTCCAAAATACATTACATGAACAAGCCACAACATCTCAAAAGATCGTTGTGGTGGTCGAGGTTTTACAACAACCAGTTAAAAAATAC

Protein sequence

IKSLRHCESTTK*YDNRRASRDKIKVSTMSGSLVPSI*Y*RKIIAIKKKI*SS*EKSIVFWQ*RTKS*EKKSRDGPASY*CSKIFGRDETKAIRTGKK**FYKH*GNSSEKKE*EIIKEHCLLP*RDKS*KDMHYRFETRNRKIEWNCYRIPKYIT*TSHNISKDRCGGRGFTTTS*KIX
Homology
[Close]
BLAST of Chy3G054260 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 5.77e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   IKSLRHCESTTK*YDNRRASRDKIKVSTMSGSLVPSI 37
           +KSLRHCE TT+ YDN RASR+ I ++ MS SLVP+I
Sbjct: 231 MKSLRHCEGTTEQYDNWRASRNGITINAMSESLVPNI 267

[Close]
BLAST of Chy3G054260 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 5.89e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1   IKSLRHCESTTK*YDNRRASRDKIKVSTMSGSLVPSI 37
           +KSLRHCE TT+ YDN RASR+ I ++ MS SLVP+I
Sbjct: 295 MKSLRHCEGTTEQYDNWRASRNGITINAMSESLVPNI 331

The following BLAST results are available for this feature:
BLAST of Chy3G054260 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G054260 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G054260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032013.15.77e-0464.86glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK16834.15.89e-0464.86glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
BLAST of Chy3G054260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G054260.1Chy3G054260.1mRNA