Chy3G054250 (gene) Cucumber (hystrix) v1

Overview
NameChy3G054250
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGlial fibrillary acidic protein-like
LocationchrH03: 6393176 .. 6394605 (+)
RNA-Seq ExpressionChy3G054250
SyntenyChy3G054250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACTTTCATATTGCTCAATCATAGTCAAATAAGGCAAAGGAAAATTCTTCAACTGTGCTCCTATACTTTTTATTTGGATTTCTAATCATCTAAGGTATTTTAATAATGTTCGATATCCTCTAATAAAACTCAGTTGTCCGTGGCATAATGCAAGAAACATTAATAGAGAATTCAATAGTTGTACACTAGGATCCAAATGTTCCAAAATTTGAAATTTTGATGCAATTTTCCAGCCATTTAACGACAATGGAAGTAGTCCGAAAAGCTCATTGGATGCCTACAAGTCCCTCATACCGTTACGGGAAATTGGCTTTTATCCCACTATTGAGCCAATGGGGGCATCAACTACTCCCCTCTTTTGGTTATGTCAATCATGGTCAAAACAATTCACGTCAGTTGTATGTGGGCTAGAGGATTAAAAATTCTCATATGAGTCCGACTTGATAAATAAAAAAATTCATGAAGCAATTGAGACATGAAATTTCGTAAAAAAAAATTAAGAGTTTGCGACATTGTGAGAGTACTACAAAATAGTATGATAATCGGAGAGCATCTAGAGATAAGATTAAAGTTAGTACTATGTCAGGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGATATGCATTACAGATTTGAAACAAGAAATAGAAAGATTGAATGGAATTGCTATAGAATTCCAAAATACATTACATGAACAAGCCACAACATCTCAAAAGATCGTTGTGGTGGTCGAGGTTTTACAACAACCAGTTAAAAAATACAAGTCCCAGCTTATAGGAGCAGAAAGCAAAAACAAATTTTTCAATAAGCCATCAATAGTTCTGAAGGGCAGTTGCTGATATGTCATAAGTAAAAAAATGTCACAACAGATGACTACACTCAATTAAAAGAAAAATATCAAGAAATGTCAATAGATTTCATAATATGAAGACACGAGTACGACATAATAAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGAGATGAGAAATTAAGACAAATGACAAAGATGACAGAACAATTCTCAATGCAAACTATGACTCTTCGACAAGGCATCATACCCACACATGACACCAACAAAGAATTGTCTCGTTTTCTAGGAATCATAAACAATACCTTGAACATTATGGATGCTACCATTAG

mRNA sequence

ATGGCAGACTTTCATATTGCTCAATCATAGTCAAATAAGGCAAAGGAAAATTCTTCAACTGTGCTCCTATACTTTTTATTTGGATTTCTAATCATCTAAGGTATTTTAATAATGTTCGATATCCTCTAATAAAACTCAGTTGTCCGTGGCATAATGCAAGAAACATTAATAGAGAATTCAATAGTTGTACACTAGGATCCAAATGTTCCAAAATTTGAAATTTTGATGCAATTTTCCAGCCATTTAACGACAATGGAAGTAGTCCGAAAAGCTCATTGGATGCCTACAAGTCCCTCATACCGTTACGGGAAATTGGCTTTTATCCCACTATTGAGCCAATGGGGGCATCAACTACTCCCCTCTTTTGGTTATGTCAATCATGGTCAAAACAATTCACGTCAGTTGTATGTGGGCTAGAGGATTAAAAATTCTCATATGAGTCCGACTTGATAAATAAAAAAATTCATGAAGCAATTGAGACATGAAATTTCGTAAAAAAAAATTAAGAGTTTGCGACATTGTGAGAGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGACGAGTACGACATAATAAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGAGATGAGAAATTAAGACAAATGACAAAGATGACAGAACAATTCTCAATGCAAACTATGACTCTTCGACAAGGCATCATACCCACACATGACACCAACAAAGAATTGTCTCGTTTTCTAGGAATCATAAACAATACCTTGAACATTATGGATGCTACCATTAG

Coding sequence (CDS)

ATGGCAGACTTTCATATTGCTCAATCATAGTCAAATAAGGCAAAGGAAAATTCTTCAACTGTGCTCCTATACTTTTTATTTGGATTTCTAATCATCTAAGGTATTTTAATAATGTTCGATATCCTCTAATAAAACTCAGTTGTCCGTGGCATAATGCAAGAAACATTAATAGAGAATTCAATAGTTGTACACTAGGATCCAAATGTTCCAAAATTTGAAATTTTGATGCAATTTTCCAGCCATTTAACGACAATGGAAGTAGTCCGAAAAGCTCATTGGATGCCTACAAGTCCCTCATACCGTTACGGGAAATTGGCTTTTATCCCACTATTGAGCCAATGGGGGCATCAACTACTCCCCTCTTTTGGTTATGTCAATCATGGTCAAAACAATTCACGTCAGTTGTATGTGGGCTAGAGGATTAAAAATTCTCATATGAGTCCGACTTGATAAATAAAAAAATTCATGAAGCAATTGAGACATGAAATTTCGTAAAAAAAAATTAAGAGTTTGCGACATTGTGAGAGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGACGAGTACGACATAATAAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGAGATGAGAAATTAAGACAAATGACAAAGATGACAGAACAATTCTCAATGCAAACTATGACTCTTCGACAAGGCATCATACCCACACATGACACCAACAAAGAATTGTCTCGTTTTCTAGGAATCATAAACAATACCTTGAACATTATGGATGCTACCATTAG

Protein sequence

MADFHIAQS*SNKAKENSSTVLLYFLFGFLII*GILIMFDIL**NSVVRGIMQETLIENSIVVH*DPNVPKFEILMQFSSHLTTMEVVRKAHWMPTSPSYRYGKLAFIPLLSQWGHQLLPSFGYVNHGQNNSRQLYVG*RIKNSHMSPT**IKKFMKQLRHEIS*KKIKSLRHCERSLVPSI*Y*RKIIAIKKKI*SS*EKSIVFWQ*RTKS*EKKSRDGPASY*CSKIFGRDETKAIRTGKK**FYKH*GNSSEKKE*EIIKEHCLLP*RDKS*KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFLGIINNTLNIMDATIX
Homology
BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7T0F3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00700 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.1e-15
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A G+ME+G EKLRQM  M +QFSMQ  TLRQG+IPT DTN+ELS FL
Sbjct: 286 KDEYETLRRKYDDAIGRMERGAEKLRQMAGMADQFSMQARTLRQGVIPTRDTNRELSHFL 345

Query: 336 GIINNTL 343
           GII   L
Sbjct: 346 GIIGQYL 352

BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7TP68 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00980 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.8e-15
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A GQME+G EKLRQM ++ +QFS+Q  TLRQG+IPT DTN+ELS FL
Sbjct: 9   KDEYETLRRKYDYAIGQMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTNRELSHFL 68

Query: 336 GIINNTL 343
           GII   L
Sbjct: 69  GIIGQYL 75

BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7U875 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00580 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-14
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           ++EY+ +RRKYDGARGQMEQG EKLRQM +M +QF +Q  TL++G+IP  DTNKELS FL
Sbjct: 111 RNEYNTLRRKYDGARGQMEQGPEKLRQMARMNDQFLVQARTLQKGVIPIRDTNKELSHFL 170

Query: 336 GII 339
           GII
Sbjct: 171 GII 173

BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A G+ME+G EKLRQM ++ +QFS+Q  TLRQG+IPT DT+KELS FL
Sbjct: 533 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 592

Query: 336 GIINNTLNI 345
           GII   L +
Sbjct: 593 GIIGQCLGL 601

BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A G+ME+G EKLRQM ++ +QFS+Q  TLRQG+IPT DT+KELS FL
Sbjct: 181 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 240

Query: 336 GIINNTL 343
           GII   L
Sbjct: 241 GIIGQCL 247

BLAST of Chy3G054250 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.62e-17
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A G+ME+G EKLRQM ++ +QF +Q  TLRQG+IPT DT+KELS FL
Sbjct: 70  KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDTDKELSHFL 129

Query: 336 GIINNTL 342
           GII   L
Sbjct: 130 GIIGQCL 136

BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.68e-17
Identity = 98/337 (29.08%), Postives = 140/337 (41.54%), Query Frame = 0

Query: 70  PKFEILMQFSSHLTTMEVVRKAHWMPTSPSYRY--GKLAFIPLL---SQWGHQLLPSFGY 129
           P+ +    ++    T+     AHW P  P +    G +A+ PLL     W  Q  P    
Sbjct: 280 PQIKFNSPWNKTRNTIREFNSAHWDPKDPEFGAYGGGIAYSPLLVLRQSWSKQFAP---- 339

Query: 130 VNHGQNNSRQLYVG*RIKNSHMSPT**IKKFMKQLRHEIS*KKIKSLRHCE--------- 189
           V  G  +    Y    I N  +       KF+K         K+KSLRHCE         
Sbjct: 340 VVCGLEDWEFSYES-NIANDKIHEAVEAWKFVK---------KMKSLRHCEGTTEQYDNW 399

Query: 190 -------------RSLVPSI*Y*RKIIAIKKKI*SS*EKSIVFWQ*RTKS*EKKSRDGPA 249
                         SLVP+I   +K    +K++    E + V      K  E+  +    
Sbjct: 400 RASRNGITMNPMSESLVPNIEL-KKYHDKEKELKRLREMNCVLATENEKLREEVKKWVQQ 459

Query: 250 SY*CSKIFGRDETKAIRTG---------------------KK**FYKH*GNSSE------ 309
           +    +     + K + T                       K  F +   NSSE      
Sbjct: 460 AVNTPRDLDEAKRKRLETAMGIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLIC 519

Query: 310 KKE*EIIKE---HCLLP*RDKS*-----KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMT 344
           +K  E+I +     +   ++ S      KDEY+ +RRKYD A G+ME+G EKLRQM ++ 
Sbjct: 520 RKAREVITDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVA 579

BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.79e-17
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A G+ME+G EKLRQM ++ +QFS+Q  TLRQG+IPT DT+KELS FL
Sbjct: 181 KDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDTDKELSHFL 240

Query: 336 GIINNTL 342
           GII   L
Sbjct: 241 GIIGQCL 247

BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0034829.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 6.34e-17
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           KDEY+ +RRKYD A G+ME+G EKLRQM  M +QFSMQ  TLRQG+IPT DTN+ELS FL
Sbjct: 286 KDEYETLRRKYDDAIGRMERGAEKLRQMAGMADQFSMQARTLRQGVIPTRDTNRELSHFL 345

Query: 336 GIINNTLNIMDAT 348
           GII   L  +  T
Sbjct: 346 GIIGQYLEQLLTT 358

BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0051514.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 6.34e-17
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 276 KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFL 335
           ++EY+ +RRKYDGARGQMEQG EKLRQM +M +QF +Q  TL++G+IP  DTNKELS FL
Sbjct: 111 RNEYNTLRRKYDGARGQMEQGPEKLRQMARMNDQFLVQARTLQKGVIPIRDTNKELSHFL 170

Query: 336 GII 338
           GII
Sbjct: 171 GII 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T0F35.1e-1568.66Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TP688.8e-1567.16Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7U8751.1e-1468.25Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SUT01.5e-1463.77Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5A7VDD92.0e-1465.67Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
TYK27025.11.62e-1764.18glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0033221.11.68e-1729.08uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa][more]
KAA0065294.12.79e-1765.67glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0034829.16.34e-1764.38glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0051514.16.34e-1768.25glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glia... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G054250.1Chy3G054250.1mRNA