Chy3G054250 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGACTTTCATATTGCTCAATCATAGTCAAATAAGGCAAAGGAAAATTCTTCAACTGTGCTCCTATACTTTTTATTTGGATTTCTAATCATCTAAGGTATTTTAATAATGTTCGATATCCTCTAATAAAACTCAGTTGTCCGTGGCATAATGCAAGAAACATTAATAGAGAATTCAATAGTTGTACACTAGGATCCAAATGTTCCAAAATTTGAAATTTTGATGCAATTTTCCAGCCATTTAACGACAATGGAAGTAGTCCGAAAAGCTCATTGGATGCCTACAAGTCCCTCATACCGTTACGGGAAATTGGCTTTTATCCCACTATTGAGCCAATGGGGGCATCAACTACTCCCCTCTTTTGGTTATGTCAATCATGGTCAAAACAATTCACGTCAGTTGTATGTGGGCTAGAGGATTAAAAATTCTCATATGAGTCCGACTTGATAAATAAAAAAATTCATGAAGCAATTGAGACATGAAATTTCGTAAAAAAAAATTAAGAGTTTGCGACATTGTGAGAGTACTACAAAATAGTATGATAATCGGAGAGCATCTAGAGATAAGATTAAAGTTAGTACTATGTCAGGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGATATGCATTACAGATTTGAAACAAGAAATAGAAAGATTGAATGGAATTGCTATAGAATTCCAAAATACATTACATGAACAAGCCACAACATCTCAAAAGATCGTTGTGGTGGTCGAGGTTTTACAACAACCAGTTAAAAAATACAAGTCCCAGCTTATAGGAGCAGAAAGCAAAAACAAATTTTTCAATAAGCCATCAATAGTTCTGAAGGGCAGTTGCTGATATGTCATAAGTAAAAAAATGTCACAACAGATGACTACACTCAATTAAAAGAAAAATATCAAGAAATGTCAATAGATTTCATAATATGAAGACACGAGTACGACATAATAAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGAGATGAGAAATTAAGACAAATGACAAAGATGACAGAACAATTCTCAATGCAAACTATGACTCTTCGACAAGGCATCATACCCACACATGACACCAACAAAGAATTGTCTCGTTTTCTAGGAATCATAAACAATACCTTGAACATTATGGATGCTACCATTAG ATGGCAGACTTTCATATTGCTCAATCATAGTCAAATAAGGCAAAGGAAAATTCTTCAACTGTGCTCCTATACTTTTTATTTGGATTTCTAATCATCTAAGGTATTTTAATAATGTTCGATATCCTCTAATAAAACTCAGTTGTCCGTGGCATAATGCAAGAAACATTAATAGAGAATTCAATAGTTGTACACTAGGATCCAAATGTTCCAAAATTTGAAATTTTGATGCAATTTTCCAGCCATTTAACGACAATGGAAGTAGTCCGAAAAGCTCATTGGATGCCTACAAGTCCCTCATACCGTTACGGGAAATTGGCTTTTATCCCACTATTGAGCCAATGGGGGCATCAACTACTCCCCTCTTTTGGTTATGTCAATCATGGTCAAAACAATTCACGTCAGTTGTATGTGGGCTAGAGGATTAAAAATTCTCATATGAGTCCGACTTGATAAATAAAAAAATTCATGAAGCAATTGAGACATGAAATTTCGTAAAAAAAAATTAAGAGTTTGCGACATTGTGAGAGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGACGAGTACGACATAATAAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGAGATGAGAAATTAAGACAAATGACAAAGATGACAGAACAATTCTCAATGCAAACTATGACTCTTCGACAAGGCATCATACCCACACATGACACCAACAAAGAATTGTCTCGTTTTCTAGGAATCATAAACAATACCTTGAACATTATGGATGCTACCATTAG ATGGCAGACTTTCATATTGCTCAATCATAGTCAAATAAGGCAAAGGAAAATTCTTCAACTGTGCTCCTATACTTTTTATTTGGATTTCTAATCATCTAAGGTATTTTAATAATGTTCGATATCCTCTAATAAAACTCAGTTGTCCGTGGCATAATGCAAGAAACATTAATAGAGAATTCAATAGTTGTACACTAGGATCCAAATGTTCCAAAATTTGAAATTTTGATGCAATTTTCCAGCCATTTAACGACAATGGAAGTAGTCCGAAAAGCTCATTGGATGCCTACAAGTCCCTCATACCGTTACGGGAAATTGGCTTTTATCCCACTATTGAGCCAATGGGGGCATCAACTACTCCCCTCTTTTGGTTATGTCAATCATGGTCAAAACAATTCACGTCAGTTGTATGTGGGCTAGAGGATTAAAAATTCTCATATGAGTCCGACTTGATAAATAAAAAAATTCATGAAGCAATTGAGACATGAAATTTCGTAAAAAAAAATTAAGAGTTTGCGACATTGTGAGAGATCCTTAGTTCCAAGCATATAGTATTGAAGAAAAATTATAGCAATAAAGAAAAAGATTTGAAGCAGTTAAGAAAAATCAATTGTGTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAGATGGTCCAGCAAGTTATTAGTGCTCAAAGATATTTGGACGAGACGAAACGAAAGCAATCAGAACTGGAAAAAAATAATGATTCTATAAACACTAAGGCAATTCAAGTGAGAAAAAAGAATAAGAGATTATTAAGGAACATTGTTTACTTCCATGAAGAGACAAAAGCTAAAAAGACGAGTACGACATAATAAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGAGATGAGAAATTAAGACAAATGACAAAGATGACAGAACAATTCTCAATGCAAACTATGACTCTTCGACAAGGCATCATACCCACACATGACACCAACAAAGAATTGTCTCGTTTTCTAGGAATCATAAACAATACCTTGAACATTATGGATGCTACCATTAG MADFHIAQS*SNKAKENSSTVLLYFLFGFLII*GILIMFDIL**NSVVRGIMQETLIENSIVVH*DPNVPKFEILMQFSSHLTTMEVVRKAHWMPTSPSYRYGKLAFIPLLSQWGHQLLPSFGYVNHGQNNSRQLYVG*RIKNSHMSPT**IKKFMKQLRHEIS*KKIKSLRHCERSLVPSI*Y*RKIIAIKKKI*SS*EKSIVFWQ*RTKS*EKKSRDGPASY*CSKIFGRDETKAIRTGKK**FYKH*GNSSEKKE*EIIKEHCLLP*RDKS*KDEYDIIRRKYDGARGQMEQGDEKLRQMTKMTEQFSMQTMTLRQGIIPTHDTNKELSRFLGIINNTLNIMDATIX Homology
BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7T0F3 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00700 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 5.1e-15 Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0
BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7TP68 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00980 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 8.8e-15 Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0
BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7U875 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00580 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.1e-14 Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0
BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14 Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0
BLAST of Chy3G054250 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14 Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0
BLAST of Chy3G054250 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 89.4 bits (220), Expect = 1.62e-17 Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 0
BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]) HSP 1 Score: 96.3 bits (238), Expect = 1.68e-17 Identity = 98/337 (29.08%), Postives = 140/337 (41.54%), Query Frame = 0
BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 91.7 bits (226), Expect = 2.79e-17 Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0
BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0034829.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 94.0 bits (232), Expect = 6.34e-17 Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 0
BLAST of Chy3G054250 vs. NCBI nr
Match: KAA0051514.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK24152.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 92.0 bits (227), Expect = 6.34e-17 Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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