Chy3G053320 (gene) Cucumber (hystrix) v1

Overview
NameChy3G053320
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH03: 4715493 .. 4715693 (-)
RNA-Seq ExpressionChy3G053320
SyntenyChy3G053320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTCTTCATCTGGGTGGTGGTCGGCAACAAAACAGCCAGAACTATCGCTAGACCATCACGGGAAAGCGAAAATCCAGATATGGGGGCTCTCGGAAGCAAGGAGAAGTATTTCTATGGAAGAAGAAGTTTGGGTTCAAGAGAGTTTGAAGAGAACAAACGAACGGTCCCCAGCTGCCCCGATCCTCTGCATAACTAG

mRNA sequence

ATGCTTTTCTTCATCTGGGTGGTGGTCGGCAACAAAACAGCCAGAACTATCGCTAGACCATCACGGGAAAGCGAAAATCCAGATATGGGGGCTCTCGGAAGCAAGGAGAAGTATTTCTATGGAAGAAGAAGTTTGGGTTCAAGAGAGTTTGAAGAGAACAAACGAACGGTCCCCAGCTGCCCCGATCCTCTGCATAACTAG

Coding sequence (CDS)

ATGCTTTTCTTCATCTGGGTGGTGGTCGGCAACAAAACAGCCAGAACTATCGCTAGACCATCACGGGAAAGCGAAAATCCAGATATGGGGGCTCTCGGAAGCAAGGAGAAGTATTTCTATGGAAGAAGAAGTTTGGGTTCAAGAGAGTTTGAAGAGAACAAACGAACGGTCCCCAGCTGCCCCGATCCTCTGCATAACTAG

Protein sequence

MLFFIWVVVGNKTARTIARPSRESENPDMGALGSKEKYFYGRRSLGSREFEENKRTVPSCPDPLHN*
Homology
BLAST of Chy3G053320 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-23
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MLFFIWVVVGNKTARTIARPSRESENPDMGALGSKEKYFYGRRSLGSREFEENKRTVPSC 60
          +LFFIWVVVGN+ A  +ARP  ESENPDMGA+GSKEKYF G RSLGSREFEENKRTVPSC
Sbjct: 21 ILFFIWVVVGNQAASAMARPLEESENPDMGAVGSKEKYFNG-RSLGSREFEENKRTVPSC 80

Query: 61 PDPLHN 67
          PDPLHN
Sbjct: 81 PDPLHN 85

BLAST of Chy3G053320 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 4.18e-32
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1  MLFFIWVVVGNKTARTIARPSRESENPDMGALGSKEKYFYGRRSLGSREFEENKRTVPSC 60
          +LFFIWVVVGN+ A  +ARP  ESENPDMGA+GSKEKYF GR SLGSREFEENKRTVPSC
Sbjct: 21 ILFFIWVVVGNQAASAMARPLEESENPDMGAVGSKEKYFNGR-SLGSREFEENKRTVPSC 80

Query: 61 PDPLHN 66
          PDPLHN
Sbjct: 81 PDPLHN 85

BLAST of Chy3G053320 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 7.34e-14
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 1  MLFFIWVVVGNKT--ARTIARPSRESENPDM---GALGSKEK----YFYGRRSLGSREFE 60
          ++FFIWVV  +    A  +ARP   ++ P+    G  GSKEK    YF GR S GSR F+
Sbjct: 22 LIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNGR-SFGSRGFQ 81

Query: 61 ENKRTVPSCPDPLHN 66
          E KRTVPSCPDPLHN
Sbjct: 82 EKKRTVPSCPDPLHN 95

BLAST of Chy3G053320 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 8.56e-14
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 0

Query: 1   MLFFIWVVVGNKT--ARTIARPSRESENPDM---GALGSKEK----YFYGRRSLGSREFE 60
           ++FFIWVV  +    A  +ARP   ++ P+    G  GSKEK    YF GR S GSR F+
Sbjct: 28  LIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNGR-SFGSRGFQ 87

Query: 61  ENKRTVPSCPDPLHN 66
           E KRTVPSCPDPLHN
Sbjct: 88  EKKRTVPSCPDPLHN 101

BLAST of Chy3G053320 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.4 bits (137), Expect = 8.92e-09
Identity = 36/74 (48.65%), Postives = 41/74 (55.41%), Query Frame = 0

Query: 1  MLFFIWVVVGNKTARTIARPSRESENPDM----GALGSKEK----YFYGRRSLGSREFEE 60
          M  FIWVV  ++     AR   E+  P+     G  GSKEK    YF G R      FE+
Sbjct: 20 MALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEKLLRKYFNGMRG-----FED 79

Query: 61 NKRTVPSCPDPLHN 66
          NKRTVPSCPDPLHN
Sbjct: 80 NKRTVPSCPDPLHN 88

BLAST of Chy3G053320 vs. NCBI nr
Match: XP_019059276.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Tarenaya hassleriana])

HSP 1 Score: 50.4 bits (119), Expect = 1.57e-05
Identity = 30/72 (41.67%), Postives = 36/72 (50.00%), Query Frame = 0

Query: 1   MLFFIWVVVGNKTARTIARPSRESENPDMGALGSKEKYFYGRRSLGSRE------FEENK 60
           +L  IWV+  N       R   E   P     G  +KYF G+ S   R       F++NK
Sbjct: 82  LLIHIWVLPENAGLAAAIRVFPEV--PASNQQGLMKKYFAGKVSPAGRVVGLGNGFQDNK 141

Query: 61  RTVPSCPDPLHN 66
           RTVPSCPDPLHN
Sbjct: 142 RTVPSCPDPLHN 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDX36.4e-2383.33Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
Match NameE-valueIdentityDescription
KAA0063931.14.18e-3283.33putative Clavata3/esr-related 43 [Cucumis melo var. makuwa][more]
KAG7016789.17.34e-1453.33hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579278.18.56e-1453.33CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAG6601785.18.92e-0948.65CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
XP_019059276.11.57e-0541.67PREDICTED: CLAVATA3/ESR (CLE)-related protein 27 [Tarenaya hassleriana][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G053320.1Chy3G053320.1mRNA