Chy3G052580 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G052580
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	cucumber peeling cupredoxin-like
Location	chrH03: 2957395 .. 2957649 (-)
RNA-Seq Expression	Chy3G052580
Synteny	Chy3G052580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTGGTTTGTTTTATTTCCTTGTAGTATTTGAATCAAGATCCAACGAGACTCACTCCATTGGTCAGCCAAATTCTCAAGCGGATTTTGACGGCTGTGTCAAGCCAGGATTTTTTATAAATAAAATTCAGTACATTTCCTTAAGCCAACCCATGCGTCGATATTTCATATCGACCATTGGAGATGATTGCGAAGCAGGCATGAAATTCGCTGTTAATATTTTACCAAAACCTAGAAACTCCGCAGCCAAA

mRNA sequence

ATGTGTTTTGTATTTGAATCAAGATCCAACGAGACTCACTCCATTGGTCAGCCAAATTCTCAAGCGGATTTTGACGGCTGTGTCAAGCCAGGATTTTTTATAAATAAAATTCAGTACATTTCCTTAAGCCAACCCATGCGTCGATATTTCATATCGACCATTGGAGATGATTGCGAAGCAGGCATGAAATTCGCTGTTAATATTTTACCAAAACCTAGAAACTCCGCAGCCAAA

Coding sequence (CDS)

ATGTGTTTTGTATTTGAATCAAGATCCAACGAGACTCACTCCATTGGTCAGCCAAATTCTCAAGCGGATTTTGACGGCTGTGTCAAGCCAGGATTTTTTATAAATAAAATTCAGTACATTTCCTTAAGCCAACCCATGCGTCGATATTTCATATCGACCATTGGAGATGATTGCGAAGCAGGCATGAAATTCGCTGTTAATATTTTACCAAAACCTAGAAACTCCGCAGCCAAA

Protein sequence

MCFVFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMKFAVNILPKPRNSAAK

Homology

[Close]

BLAST of Chy3G052580 vs. ExPASy TrEMBL
Match: A0A5D3D4H3 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00010 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +FESRSNETHSIGQP SQA+FDGC+KPGF++NKIQYISLSQP RRYF+STIGDDC+AGMK
Sbjct: 62  IFESRSNETHSIGQPESQAEFDGCIKPGFYLNKIQYISLSQPRRRYFMSTIGDDCKAGMK 121

Query: 64  FAVNILPKPRNSAAK 79
           FAVNILP PRNSAAK
Sbjct: 122 FAVNILPNPRNSAAK 136

[Close]

BLAST of Chy3G052580 vs. ExPASy TrEMBL
Match: A0A1S3CJW8 (cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103501290 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +FESRSNETHSIGQP SQA+FDGC+KPGF++NKIQYISLSQP RRYF+STIGDDC+AGMK
Sbjct: 62  IFESRSNETHSIGQPESQAEFDGCIKPGFYLNKIQYISLSQPRRRYFMSTIGDDCKAGMK 121

Query: 64  FAVNILPKPRNSAAK 79
           FAVNILP PRNSAAK
Sbjct: 122 FAVNILPNPRNSAAK 136

[Close]

BLAST of Chy3G052580 vs. ExPASy TrEMBL
Match: A0A0A0KAM8 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G018590 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +FESRSNE HSIGQP SQADFDGCV P F   K+Q+ISLSQPMRRYF+ST GDDCEAGMK
Sbjct: 61  IFESRSNEVHSIGQPISQADFDGCVNPSFVFRKVQFISLSQPMRRYFMSTFGDDCEAGMK 120

Query: 64  FAVNILPKPRNSAAK 79
           FA+NILPKPRNSAAK
Sbjct: 121 FAINILPKPRNSAAK 135

[Close]

BLAST of Chy3G052580 vs. ExPASy TrEMBL
Match: A0A6J1DQ85 (cucumber peeling cupredoxin-like OS=Momordica charantia OX=3673 GN=LOC111023215 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.4e-16
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +F S++N TH+I QP SQ DFDGCVK G   + I +IS  +P R YFIST G+DC AGMK
Sbjct: 60  IFRSKANGTHTIAQPQSQVDFDGCVKSGIVFDFIIFISFDRPGRHYFISTAGNDCNAGMK 119

Query: 64  FAVNILPK 72
           FA+N+LP+
Sbjct: 120 FAINVLPE 127

[Close]

BLAST of Chy3G052580 vs. ExPASy TrEMBL
Match: A0A6J1JI19 (cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111485291 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.9e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 5   FESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMKF 64
           F S +N+TH+ G P SQA+FDGCVKPG F   + +++  +P R+YFI  +G+ C+ GMKF
Sbjct: 85  FNSSANQTHNYGMPESQAEFDGCVKPGIFFENVIFVTFDRPARKYFICNVGNHCKLGMKF 144

Query: 65  AVNILPK---PRNSAAK 79
           AV++LP    P NSA K
Sbjct: 145 AVDVLPNPGMPPNSALK 161

[Close]

BLAST of Chy3G052580 vs. NCBI nr
Match: XP_008463052.1 (PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo] >KAA0039171.1 cucumber peeling cupredoxin-like [Cucumis melo var. makuwa] >TYK18443.1 cucumber peeling cupredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 6.34e-42
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +FESRSNETHSIGQP SQA+FDGC+KPGF++NKIQYISLSQP RRYF+STIGDDC+AGMK
Sbjct: 62  IFESRSNETHSIGQPESQAEFDGCIKPGFYLNKIQYISLSQPRRRYFMSTIGDDCKAGMK 121

Query: 64  FAVNILPKPRNSAAK 78
           FAVNILP PRNSAAK
Sbjct: 122 FAVNILPNPRNSAAK 136

[Close]

BLAST of Chy3G052580 vs. NCBI nr
Match: XP_004138540.1 (cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45894.1 hypothetical protein Csa_005641 [Cucumis sativus])

HSP 1 Score: 135 bits (341), Expect = 9.32e-39
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +FESRSNE HSIGQP SQADFDGCV P F   K+Q+ISLSQPMRRYF+ST GDDCEAGMK
Sbjct: 61  IFESRSNEVHSIGQPISQADFDGCVNPSFVFRKVQFISLSQPMRRYFMSTFGDDCEAGMK 120

Query: 64  FAVNILPKPRNSAAK 78
           FA+NILPKPRNSAAK
Sbjct: 121 FAINILPKPRNSAAK 135

[Close]

BLAST of Chy3G052580 vs. NCBI nr
Match: XP_038885967.1 (cucumber peeling cupredoxin-like [Benincasa hispida] >XP_038885968.1 cucumber peeling cupredoxin-like [Benincasa hispida])

HSP 1 Score: 121 bits (304), Expect = 4.24e-33
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +FESR+NETHSIGQP SQA+FDGCVKPGFF NKI +ISL +P RRYFISTIG+DC AGMK
Sbjct: 60  IFESRANETHSIGQPESQANFDGCVKPGFFFNKIIFISLDRPGRRYFISTIGNDCNAGMK 119

Query: 64  FAVNILPK 71
           FAVN+LPK
Sbjct: 120 FAVNVLPK 127

[Close]

BLAST of Chy3G052580 vs. NCBI nr
Match: XP_022156293.1 (cucumber peeling cupredoxin-like [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 1.30e-21
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           +F S++N TH+I QP SQ DFDGCVK G   + I +IS  +P R YFIST G+DC AGMK
Sbjct: 60  IFRSKANGTHTIAQPQSQVDFDGCVKSGIVFDFIIFISFDRPGRHYFISTAGNDCNAGMK 119

Query: 64  FAVNILPK 71
           FA+N+LP+
Sbjct: 120 FAINVLPE 127

[Close]

BLAST of Chy3G052580 vs. NCBI nr
Match: XP_038878652.1 (cucumber peeling cupredoxin-like [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 1.41e-21
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 4   VFESRSNETHSIGQPNSQADFDGCVKPGFFINKIQYISLSQPMRRYFISTIGDDCEAGMK 63
           VF S +NETH+   P SQA+FDGCVKPG F   +  +S ++P R+YFI  +G+ C  GMK
Sbjct: 60  VFNSSANETHNYAMPESQAEFDGCVKPGLFFETVSSVSFNRPGRKYFICNVGNHCNLGMK 119

Query: 64  FAVNILPKPRNSA 76
           FA++ILPKP + A
Sbjct: 120 FAIDILPKPGSIA 132

The following BLAST results are available for this feature:

BLAST of Chy3G052580 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G052580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4H3	3.9e-32	86.67	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CJW8	3.9e-32	86.67	cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103501290 PE=4 SV...	[more]
A0A0A0KAM8	1.1e-29	82.67	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G018590...	[more]
A0A6J1DQ85	1.4e-16	58.82	cucumber peeling cupredoxin-like OS=Momordica charantia OX=3673 GN=LOC111023215 ...	[more]
A0A6J1JI19	3.9e-16	50.65	cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111485291 PE=...	[more]

BLAST of Chy3G052580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463052.1	6.34e-42	86.67	PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo] >KAA0039171.1 cucumbe...	[more]
XP_004138540.1	9.32e-39	82.67	cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45894.1 hypothetical prot...	[more]
XP_038885967.1	4.24e-33	80.88	cucumber peeling cupredoxin-like [Benincasa hispida] >XP_038885968.1 cucumber pe...	[more]
XP_022156293.1	1.30e-21	58.82	cucumber peeling cupredoxin-like [Momordica charantia]	[more]
XP_038878652.1	1.41e-21	53.42	cucumber peeling cupredoxin-like [Benincasa hispida]	[more]

BLAST of Chy3G052580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 2..70 e-value: 3.8E-8 score: 35.5
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 9..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G052580.1	Chy3G052580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity