Chy3G051990 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G051990
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH03: 2062970 .. 2063471 (+)
RNA-Seq Expression	Chy3G051990
Synteny	Chy3G051990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCAAGATTCAATATGAAGATGATGGGGCATTGTAACCGCCAAATACTAATTGGCGCTTTTAACCGCAATCCACGCTAAGAATCAAAATTCCGGTCAACTCCGAGTCCACATCATAACTCCCTAAACCAACCAATTAGATTTCAATCAAGTCCAAATTTCAACTGTCAAAGTACCAAATACTTTGACTTTTTCGCTTCAACCAATCAACAACTTCCACGTTTCTTCTCATGGGTCGAATTAGAAGCAGAGGAACTTCCCCGTAAAGCTCGTATGCAAAAGAAGAATAATTGAGCTAACTCGAAATTACAACTCAGTGAAGCCTTTTCTTTTTCCTCTTTTTGCTCTGCGAGCGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTACCTCCATTAAAATCCTCGATGAAGCATTATAGTTTCGAGAATCGGTTTCACATCATGAACTCGTCCTCTAAAAGTCCAACCCACATTCTCTTTAAATTCCCATAA

mRNA sequence

ATGTCGGCAAGATTCAATATGAAGATGATGGGGCATTGTAACCGCCAAATACTAATTGGCGCTTTTAACCGCAATCCACGCTAAGAATCAAAATTCCGGTCAACTCCGAGTCCACATCATAACTCCCTAAACCAACCAATTAGATTTCAATCAAGTCCAAATTTCAACTGTCAAAGTACCAAATACTTTGACTTTTTCGCTTCAACCAATCAACAACTTCCACGTTTCTTCTCATGGGTCGAATTAGAAGCAGAGGAACTTCCCCGTAAAGCTCCGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTACCTCCATTAAAATCCTCGATGAAGCATTATAGTTTCGAGAATCGGTTTCACATCATGAACTCGTCCTCTAAAAGTCCAACCCACATTCTCTTTAAATTCCCATAA

Coding sequence (CDS)

ATGTCGGCAAGATTCAATATGAAGATGATGGGGCATTGTAACCGCCAAATACTAATTGGCGCTTTTAACCGCAATCCACGCTAAGAATCAAAATTCCGGTCAACTCCGAGTCCACATCATAACTCCCTAAACCAACCAATTAGATTTCAATCAAGTCCAAATTTCAACTGTCAAAGTACCAAATACTTTGACTTTTTCGCTTCAACCAATCAACAACTTCCACGTTTCTTCTCATGGGTCGAATTAGAAGCAGAGGAACTTCCCCGTAAAGCTCCGAGTTGCAGAATCGGTCCCCTCAAAACACCATCATCACTACCTCCATTAAAATCCTCGATGAAGCATTATAGTTTCGAGAATCGGTTTCACATCATGAACTCGTCCTCTAAAAGTCCAACCCACATTCTCTTTAAATTCCCATAA

Protein sequence

MSARFNMKMMGHCNRQILIGAFNRNPR*ESKFRSTPSPHHNSLNQPIRFQSSPNFNCQSTKYFDFFASTNQQLPRFFSWVELEAEELPRKAPSCRIGPLKTPSSLPPLKSSMKHYSFENRFHIMNSSSKSPTHILFKFP*

Homology

[Close]

BLAST of Chy3G051990 vs. ExPASy TrEMBL
Match: A0A0A0KDG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014470 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.2e-69
Identity = 131/139 (94.24%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MSARFNMKMMGHCNRQILIGAFNRNPR*ESKFRSTPSPHHNSLNQPIRFQSSPNFNCQST 60
           MSARFNMKMMGHCNRQILIGAFNRNPR ESKFRSTPSPHHNSLNQPIRF SSPNFNCQST
Sbjct: 1   MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST 60

Query: 61  KYFDFFASTNQQLPRFFSWVELEAEELPRKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120
           KYFDF ASTN QLPRFF  VELEAEELP KAPSCRIGPLKTPSSLPPLKSSMKHYSFENR
Sbjct: 61  KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120

Query: 121 FHIMNSSSKSPTHILFKFP 140
           FHIMNSSSK+PTHILFKFP
Sbjct: 121 FHIMNSSSKTPTHILFKFP 139

[Close]

BLAST of Chy3G051990 vs. NCBI nr
Match: KGN45826.1 (hypothetical protein Csa_004802 [Cucumis sativus])

HSP 1 Score: 268 bits (684), Expect = 3.81e-90
Identity = 131/139 (94.24%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MSARFNMKMMGHCNRQILIGAFNRNPR*ESKFRSTPSPHHNSLNQPIRFQSSPNFNCQST 60
           MSARFNMKMMGHCNRQILIGAFNRNPR ESKFRSTPSPHHNSLNQPIRF SSPNFNCQST
Sbjct: 1   MSARFNMKMMGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQST 60

Query: 61  KYFDFFASTNQQLPRFFSWVELEAEELPRKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120
           KYFDF ASTN QLPRFF  VELEAEELP KAPSCRIGPLKTPSSLPPLKSSMKHYSFENR
Sbjct: 61  KYFDFLASTNHQLPRFFPCVELEAEELPPKAPSCRIGPLKTPSSLPPLKSSMKHYSFENR 120

Query: 121 FHIMNSSSKSPTHILFKFP 139
           FHIMNSSSK+PTHILFKFP
Sbjct: 121 FHIMNSSSKTPTHILFKFP 139

The following BLAST results are available for this feature:

BLAST of Chy3G051990 vs.


Match Name	E-value	Identity	Description

BLAST of Chy3G051990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG2	7.2e-69	94.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014470 PE=4 SV=1	[more]

BLAST of Chy3G051990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45826.1	3.81e-90	94.24	hypothetical protein Csa_004802 [Cucumis sativus]	[more]

BLAST of Chy3G051990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G051990.1	Chy3G051990.1	mRNA