Chy3G051210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G051210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	thylakoid lumenal 15 kDa protein 1, chloroplastic
Location	chrH03: 1282996 .. 1286855 (+)
RNA-Seq Expression	Chy3G051210
Synteny	Chy3G051210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAGAGAGTGACAGGTTTTGCAGAGAAACATTAAAGAATTTGCAGACATCTCCCACTTCGAAAAGCTGTTTTTGTTTTTGGTAGGGGAATGTTGAAGTTGGAAGCTTTAATTAATTGAGGGAATAAACATGGATTTGGATATAAACAAAAGGGGGATATAGTTTGCGTTGGGTTTAATGAAAATGAAAGTAATATAAGAGGGAGAGATGTGTGTAAATGTGTTTGATGTCAGTGCAATGCATTGTAAGCTGTGAACACAGAGATGGGGAGCCCTAGGGAAGTGAAGGAAGATAAGTGTGTGTGTCTTACTGTCTTCACCCGCTTTATAGCACAGGAATGAGGAATCTACCCTCCTCCACTTCCTTACTTCACATTAACCTTAAATTACTTCTTTAATCTCTCAAATTTAACACTTCTTTCCTATTATTATAATATTTAAATTTGGTGCCTATATTAATCTATTCGAGAAAACAACTCTTGAGAATGTGTGTTTAAGGTTGGATGACTATTCCGTTTCTATTTTTACTTTACTTGTTTTTTTAGTGGTCGAGTAAGTTATATATATGTTTTTCTTTGACACGATCAATTTAAGAGTGATTTTGGACTAAAGGTTATAATTGACATTTTGAAATAGTAAAGTATGTGAACCAAAAGAAACAATTAAAAATTGGTGACGGAGGCCGACCCTTTCTAGGGGATGGCTTGGCTAATCCAATCCAATGCTCGAAGCCGACCCTTGCCAATTGCACAATATATAGCCCAAGGAAGGCCCACGATTGGTGCCGACCTTCTCCATTAAGTAGATCTTGACCTATTCAACTTAAGAGATAACTTATCTCATCTATGATTAGAAAACTCATATCAAATTACCTATAAATAAATCTCATTATGGCTCCATATAAGGTAACTTAGACTTTTGACTTCTCTATTCTATAATCTCTTATTGACTTAGGCATTGATAGGTTTTCTTCTTCGAATTACAAATTTAACTATTGGTGTCACGTGAGGGTCATGTTTGTTTTTTCTTGGCCAAAGTTTGACATCAACACATTTGATGACATGTAATGCTAGTAGTGTAAGACGTTTTGAGGTTGTCAAATGTCAATTTGATTCTAGCCTATTTATTTTCGAATTTCTATAAATTTAATAGGTTAGTTGGTTGGCCCAAAACCTCGACACGATATTTTTCATTGAAACGTGCACTTTTCCATGCCTTTTCTCAACACTGTATTGGTTTAGGTCCACTTGTGAATTTTGGACAACTCTCACTTCAATTTTATATTTAAAAAATCTATAAATTTTAGAGAAAACGTTTATAAATAGCCCGAAAGGAGAAAAAAAAGCAAGTAATGTGCTTTATATAAGTCACAGTGCACTCAACACTACATTAATCTAATAAGATTGAAACTAAAAGAACATAATGTAGGAGCATCAAAGACGTTAATGCAAGTTTCTTTGAGTAAAAAAGTCTTAAAACTTTTCGAATATAAAACTCATAAGAGATAAGCTTGAATTTTTTTTTTTTTTTGCTAGTGTGTTCGATTCCACCCTCAAATAGATTTTGTTGTGATGAATAAATTGTGGTACTATTGTTTAGTGTAATCTAATGTTTATTAGATTACATCTTCGTTCTTAAAAAGAGCATCACCCGACCCGACCCGACCCATTACTTAGTGAAACGTAGTAGTCTTCCGGTAGTACCACGTGGCAGAATCTACTGTAGAAAGGACCGGAAGTAAGATACGAACAGCTGCACTCAAACAAAACTCATAATCCTTTTCCAGATTATCCAATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCATTTCGAAAACGAAAACAAAATTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAACGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTTCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTAATCTCCCCCCCTCCCTTTCCACTCCCATTTTCTTCTCCTTTCTCTTCAGATGCTTTCATTTTACCCACAATATGAAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTTATTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGTTCATTTCCTCATTTTCATTCTTATATCTCTATGTTTTGTATTGTACTGTACTGTACTGTATGATTGATTTTTGGCTATTAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGGTTTCAACCGAAGTTTCATTATTTCTATTTTTTGTACTTGTACTACAGTAATATGTGGTTGTGACATTGCTTTTTTTTTTTTTTTTTTTTTTCTGTTTCTTTTGTATTAGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTTAACTCATTTTAATCAACTGCATACTCTTATAATTCAGGATTTTCTATCCAGTTAATGCTGACTTCTATTATTTCTTCCATTGTCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGTGGTGATTGTTTGATATGTGTACAATTAAATGCTTCTTTGTTTAATCTTTAGTTTGCCCCTTTTCAGATTTTCAAATTCGAATGATTGTATTATTATATACACAACAAGTTAGTTAGGACTGGAGGCCAAATTTTGAAATCTCAGTCTTGAATGTTAAAAAATTTGCTCTAATACGATAGGAAACTACTTAGCAAAAAGTATTCATGTGATACAATAACCACGAACTTTGTATGCAGTTTGAGATGCAGAGTAACCTACAGTTTTTATCTGCGGTTTTACATGCAAGCGCTGTGCTTTGATGTTAGAATACAGTGAAGTTGTAACTTTATACAGAATGGTTGTTTTTTTCTGCTTTGAGCAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGAGCTGGTATGAAAACCCAACATCTATTTTGCTTTTAGTATCTCATCGGGAATCCTCTTCTTTTTTTATTTGTTCATACTCTCTCTCCCCACGTTCAATTAATACTTTATATATATTTTCCAAAGTACTTTATACATACTTGAAAGGTTCTATTAGTTCCTTATAAGACCTAAAAGTCAAGTTTAGGAGATTTGAAAGGTTAGAATGGCCAATATTGACCTTAGATACACAAATAGAATCTGATTCTTTTTTTCATAGTATATTTCTTGTAAACCCAACATTTATGTGCTTTTAGTATCTCATTGGGGATTCTCTCATCTCCATAATTATTTTAGATGCCATGAGGCATTAACATAGGTTGTTATTCCAACCTCTCTATGCTTCAAAAGAAATTTGACTTTTAGGCATTTAGCAACAAAGGAAACTGCAATTCAACTAACAATGGATATAATTTTCTAAAAACTAACAATGGAGTGGTTGTACGAAGAAATACTTATGCTTAATTTACCTCATAATGGCAGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGTAAAAACAAATTCTTGTGTTTCTTAGGTTTGACTGTAAATGGCTCATGATAAATAGAACAGGAAACTTATTCATTTTTGTTTACAGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

mRNA sequence

ATGAATGAAGAGAGTGACAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTTATTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGAGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Coding sequence (CDS)

ATGAATGAAGAGAGTGACAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTTATTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGAGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Protein sequence

MNEESDRNFVLSLGQPTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD*

Homology

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BLAST of Chy3G051210 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 277.3 bits (708), Expect = 1.2e-73
Identity = 142/175 (81.14%), Postives = 154/175 (88.00%), Query Frame = 0


Query: 7   RNFVLSLGQP----TFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLI 66
           R+ V SLG+     +  A +SASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI
Sbjct: 50  RSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLI 109

Query: 67  KQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLE 126
           +QDFKTSILRQANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLE
Sbjct: 110 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169

Query: 127 GALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           GA  TGNTSF+GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 170 GATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

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BLAST of Chy3G051210 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.6e-15
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 51  LSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLAN 110
           L G+DFSGK+L    F  + L  +NF  A+L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 111 VTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 170
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 171 RETLLC 177
           RE+L C
Sbjct: 174 RESLGC 178

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BLAST of Chy3G051210 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-10
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 39  GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 98
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 99  LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 158
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 159 CKVADGVNPTTGNATRETLLC 177
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

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BLAST of Chy3G051210 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 47  RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 106
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 107 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 154
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

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BLAST of Chy3G051210 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-07
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 48  GQDLSGKDFSGKTL---------IKQDFK-------TSILRQANFKGANLLGASFFDADL 107
           G DL G D SG TL         ++Q+ K        +IL +A+ +GAN+ G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 108 TGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPL 148
           + A+L +A+LR  D     + KA+LS ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

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BLAST of Chy3G051210 vs. ExPASy TrEMBL
Match: A0A0A0KA71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.0e-89
Identity = 170/174 (97.70%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 4   ESDRNFVLSLGQPTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 63
           ++ RNFVLSLGQPTFLAF+SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK
Sbjct: 41  QATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 100

Query: 64  QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 123
           QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG
Sbjct: 101 QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 160

Query: 124 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 161 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

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BLAST of Chy3G051210 vs. ExPASy TrEMBL
Match: A0A5A7TDC5 (Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00790 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.4e-87
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 4   ESDRNFVLSLGQPTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 63
           E+ RN VLSLGQPTFL FISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK
Sbjct: 43  EATRNLVLSLGQPTFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 102

Query: 64  QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 123
           QDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEG
Sbjct: 103 QDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEG 162

Query: 124 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 163 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

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BLAST of Chy3G051210 vs. ExPASy TrEMBL
Match: A0A1S3B3C6 (thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485520 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.4e-87
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 4   ESDRNFVLSLGQPTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 63
           E+ RN VLSLGQPTFL FISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK
Sbjct: 43  EATRNLVLSLGQPTFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 102

Query: 64  QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 123
           QDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEG
Sbjct: 103 QDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEG 162

Query: 124 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 163 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

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BLAST of Chy3G051210 vs. ExPASy TrEMBL
Match: A0A6J1JPS6 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.9e-82
Identity = 163/178 (91.57%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 4   ESDRNFVLSLGQ----PTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGK 63
           E+ RNFVLS+G+     +FLA ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGK
Sbjct: 41  EATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGK 100

Query: 64  TLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 123
           TLIKQDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA
Sbjct: 101 TLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 160

Query: 124 NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           NLEGALATGNTSFRGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 161 NLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

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BLAST of Chy3G051210 vs. ExPASy TrEMBL
Match: A0A6J1JKT4 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.9e-82
Identity = 163/178 (91.57%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 4   ESDRNFVLSLGQ----PTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGK 63
           E+ RNFVLS+G+     +FLA ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGK
Sbjct: 41  EATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGK 100

Query: 64  TLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 123
           TLIKQDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA
Sbjct: 101 TLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 160

Query: 124 NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           NLEGALATGNTSFRGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 161 NLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

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BLAST of Chy3G051210 vs. NCBI nr
Match: XP_004138481.2 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 hypothetical protein Csa_005512 [Cucumis sativus])

HSP 1 Score: 336 bits (861), Expect = 6.40e-115
Identity = 170/174 (97.70%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 4   ESDRNFVLSLGQPTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 63
           ++ RNFVLSLGQPTFLAF+SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK
Sbjct: 68  QATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 127

Query: 64  QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 123
           QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG
Sbjct: 128 QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 187

Query: 124 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 177
           ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 188 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241

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BLAST of Chy3G051210 vs. NCBI nr
Match: XP_008441390.1 (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA0041434.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa] >TYK24308.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 330 bits (846), Expect = 5.16e-113
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 4   ESDRNFVLSLGQPTFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 63
           E+ RN VLSLGQPTFL FISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK
Sbjct: 43  EATRNLVLSLGQPTFLVFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIK 102

Query: 64  QDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEG 123
           QDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEG
Sbjct: 103 QDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEG 162

Query: 124 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 177
           ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 163 ALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of Chy3G051210 vs. NCBI nr
Match: XP_038883977.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 315 bits (808), Expect = 6.57e-107
Identity = 164/178 (92.13%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 4   ESDRNFVLSLGQP----TFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGK 63
           E+ R+ VLSLG+     +FLAF+SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFS K
Sbjct: 60  EATRHLVLSLGESASKASFLAFLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSWK 119

Query: 64  TLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 123
           TLIKQDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA
Sbjct: 120 TLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 179

Query: 124 NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 177
           NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 180 NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 237

[Close]

BLAST of Chy3G051210 vs. NCBI nr
Match: XP_022955551.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 315 bits (806), Expect = 6.87e-107
Identity = 163/178 (91.57%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 4   ESDRNFVLSLGQP----TFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGK 63
           E+ RNFVLS+G+     +FLA ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGK
Sbjct: 41  EATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGK 100

Query: 64  TLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 123
           TLIKQDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA
Sbjct: 101 TLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 160

Query: 124 NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 177
           NLEGALATGNTSFRGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 161 NLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Chy3G051210 vs. NCBI nr
Match: XP_023552471.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315 bits (806), Expect = 6.87e-107
Identity = 163/178 (91.57%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 4   ESDRNFVLSLGQP----TFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGK 63
           E+ RNFVLS+G+     +FLA ISASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGK
Sbjct: 41  EATRNFVLSVGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGK 100

Query: 64  TLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 123
           TLIKQDFKTSILRQANFKGA LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA
Sbjct: 101 TLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNA 160

Query: 124 NLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 177
           NLEGALATGNTSFRGS INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 161 NLEGALATGNTSFRGSIINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Chy3G051210 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 277.3 bits (708), Expect = 8.4e-75
Identity = 142/175 (81.14%), Postives = 154/175 (88.00%), Query Frame = 0


Query: 7   RNFVLSLGQP----TFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLI 66
           R+ V SLG+     +  A +SASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI
Sbjct: 50  RSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLI 109

Query: 67  KQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLE 126
           +QDFKTSILRQANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLE
Sbjct: 110 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169

Query: 127 GALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 178
           GA  TGNTSF+GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 170 GATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Chy3G051210 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 208.4 bits (529), Expect = 4.8e-54
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 7   RNFVLSLGQP----TFLAFISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLI 66
           R+ V SLG+     +  A +SASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI
Sbjct: 50  RSVVWSLGEEVSKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLI 109

Query: 67  KQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLE 126
           +QDFKTSILRQANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLE
Sbjct: 110 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169

Query: 127 GALATGNTSFRGSTINGA 141
           GA  TGNTSF+GS I GA
Sbjct: 170 GATVTGNTSFKGSNITGA 187

[Close]

BLAST of Chy3G051210 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 39  GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 98
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 99  LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 158
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 159 CKVADGVNPTTGNATRETLLC 177
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Chy3G051210 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 39  GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 98
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 27  GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 86

Query: 99  LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 158
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 87  FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 146

Query: 159 CKVADGVNPTTGNATRETLLC 177
           CK A G NP TG  TR++L C
Sbjct: 147 CKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of Chy3G051210 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-09
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 47  RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 106
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 107 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 154
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of Chy3G051210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	1.2e-73	81.14	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	9.6e-15	43.65	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	9.3e-10	33.33	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	5.1e-08	38.74	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	4.3e-07	37.93	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of Chy3G051210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA71	8.0e-89	97.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1	[more]
A0A5A7TDC5	4.4e-87	96.55	Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B3C6	4.4e-87	96.55	thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1JPS6	1.9e-82	91.57	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1JKT4	1.9e-82	91.57	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima...	[more]

BLAST of Chy3G051210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138481.2	6.40e-115	97.70	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 ...	[more]
XP_008441390.1	5.16e-113	96.55	PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA...	[more]
XP_038883977.1	6.57e-107	92.13	thylakoid lumenal 15 kDa protein 1, chloroplastic [Benincasa hispida]	[more]
XP_022955551.1	6.87e-107	91.57	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata...	[more]
XP_023552471.1	6.87e-107	91.57	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy3G051210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	8.4e-75	81.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	4.8e-54	79.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	6.6e-11	33.33	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	6.6e-11	33.33	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	3.6e-09	38.74	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 69..107 e-value: 9.2E-13 score: 47.6
None	No IPR available	GENE3D	2.160.20.80		coord: 34..177 e-value: 1.4E-47 score: 162.5
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 46..148
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 9..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G051210.1	Chy3G051210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009543	chloroplast thylakoid lumen