Chy2G046450 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G046450
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S28
Location	chrH02: 27598373 .. 27602140 (+)
RNA-Seq Expression	Chy2G046450
Synteny	Chy2G046450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAGATCAAACCCACACTTCACCAATTTGCAGTTGCTGAATGTTATGTTTTAACTTCAAAATAGAATTGCTATTATCATTTTTTTCCTCATTTATGTGTGATTTTTGTGACATTATGGTTCTAAGCCAGAATACGAGCCCTTTAATTGAGTTTTGAAACCATTTATTTCAAAATTTTGTGGCTATTTGCCAACTGCTCAATATTATTGGTGTTTTTTTGGAATTCTTGTGCTTATTTGTATGCGAACTTTCTTGGCAGTAGCAGATTCTTTAGACGAGTGGTTTTGAGGTGGTTAAAATAGCTTTTGTTAGGTTTAGAAATCACTCCAAATTATATCTTTACTCGTGCGAAGGCAGATGGTATGATTTTGAATTGTACCTACATTAAAATGGTGTTGAATGATGGAAATATGTTTTGCAAAGATTTGAAATACAACAAAATTAGACCCTAATGAAGTAATTAAGTTTATGGTTTTAAGAATATACAAGTCTATATAGGATTTATTTATTTCAGTGTTTGTAATGTTAAGTTCTGCTGGATTGAAATGGGTTTCTTTTTTCTTTCTATATAACTCTAAGATGATAAAGGTAGTTCAATTGTGGAGTAACTAGTCATGATAATATCTTCCCATTAGGATCAAAGAAGAGAATCCAAGGGGAATCTTCTAAAGCCAGTACCAAGAAAACGCATTATCCACAATCCGATGTCTCCATTTCCTAAGCCAACTATGATTCAACTACCATATGTAGAAAGTCTTAACTTCTGTAAATAAGCTACATAGAACAACCAACAGTCCAACACACTCACTCAAACATGTAGTCCTCTAGAGCTCCCAATAATTCAACAGGGATCATCAACCTTTGCTTGAGCCAAACAAAGCAACGTAAGGTAGAAAAAGTTTTCAATACTTCCCTTGAAAAATTGCGTATATTTGTAGTCCCCTGATACGACTTGCAACAATAACACAGTGAATTAGAGGGAACTTCTTTGGCATCTAGATTTGGAATGGTAGGAATAAGATCTCTTTCACAAGGGACTCCTTCCAATAACCTTACTCATTAAACAAAAAAACTACTTGAAATCTTTAGCCTAATCTTGACCCTAACTCGGTTTCTTTTTCAATTGAAATGCTTCTGCCATTTCCTACTCTTCTCCAAATGCCATGAGCAAACATAATCTCTACCCACATGATACTCTTTTTGGTATACCTAAGGTTTGCCTTCAAGAATACTCCGTTTGGAAACTTATCTTTCCTTCAAAATTCTTGTAAGATGACTCTTTGTTCGTACCCATCTTTTTCCAACTTCTCTAGTGCACTTTTCACTTCCTCTCCTCAAAAGAACCCCACTAAAATCGAACATACATTCTATTCAAATTTTTCCTAAAGCTATTAGGAAGCTCTTGAAACAACTTATAGTATAATTTGGATCGTTAGGAGACATTGCTTTGATCAAAACTTTCCACCCATAGATAGCAGATTCCTTTTCCAACCCTAGCCCACTTCTCTAACTTTTTTGCTTTCACCTCATTGTAAACTTAACTTTTATCACTTGTAACTATATATGAACACCAACGACTTCTAATCCCATTGACCAAAAAAATATTTTGTTGATATTAAATTATAAATTTACTTCCTACAATTTTGTATTTATATCTAATAGATCCGCAAACTTTCAAATGTATGTAATAAATACGATACTATTAAGGTTTTAATAAACTTGTGAATTTACATTTTGTGTTCTTTGATTTCTATGGTTTTTTAAAATAAAAAAAAATTATAATATTGATTTTGTCCAAAAAAGCCATTAAACACACAAAACTAAAATTATAAATACATATTGAAGAATTTCCTAAAATTTCTTGTCCTTAGGATTACATTTTCTTTCTTTCCAACATTTTAGGATTGAGAGATTCAAATTTTCAATATGAATATATAATAATACCTAACGATTTATCTTTATATAACATTTTAAAAACTAAATTCAGAACTTAGACTACATTTATACATAAATGAGAAACGATATAAATTGCGTTGATTTTGGCTTAATCATCAATAAAAAAAATGAGCTTCACTATAAAATAATTGGATTGTTTACTAAACCATTTTGTAGTTGTGATTTGATTACTATTTATTCATGTTTACATAACTGTTACTATGGTGTAAACTTAATAAATTTATATTTTCTCGTTATCCAACAAACAACCTTCTATGATTTGAATTTTTTTACTAAATGTTATCAAGCAAATGACATCTCAAAATTTTGATTTTTTATTTTATTGTAACACCAACAAGTAACATGCATTTCACAATTCTGAATTATATTTATTTTCTTCAAATTTTTAGGACTTTCGCTGACATGATTAAAAATAAATCATCATAAGTTGATCTAGTAATAAAAAAAGAAGATATAGTCTCAATAATCATATTACAATTACAAAGATCAAACATAATTAAAATGGATGCATTTGTTTTTAATCGGATGAATTAGGTGACCTAAAATGTAAAATTTTAGTTGTTTAAATATAATAATAATGATTTTCCGTATGCAGCCTTCAAGGGTTTCAAAAAACCAATAATATAAAATTACCAGACCACCCTTACACTTGATTACTCCATAGAGGGGTATATTCGTCTTCATCCACAATCAGAAACCCTAGTTATTGTGCCCAAAGTATTTCCTTTCACCCTCTCCCATTTGTGTTGCCGGCGGCGTCTCTTCAAATTCTACTGAGTTCTCTCCGGCTTCATTCTTTCTCCCTCGTTTAAGGTTCGTATCGACGTGCTTTTTCGATCCATGGATTCGTTGTGACTTACTTTGTTCGTTGTTCTGTTCCTTATCCATAGAATGGGCAGCACTTCCTATTTGTATTCTCTGCGAGAAAGCTGACAAATTATGGCATTTATTCGTCAGTTTTGCTTTTGTTTGCCTTCGTTGATTCGTGTTCTTGTCTTTTGGTTGGTGGTTATATGATTTTGTTTTCACGATTGAATTCTTACCGAAGAAAATTTTCTGAGTAATTATTACATGGAGAACCCTTGTTTCATGATAGACAGATGATTATTGAGATTGAGATTCGAGATATTTTGATTTGCAGTTCTTCGTTTTGTTTATGAGTTGGAAACCTTGAAATGTTATGCAGACATTTTCGTTCTCCCTCCCTCCCTTGGTTCAAAATATTGAAGTAATTAGAATTTTAACTCGTATATGCTTTCTGAAAGTTGGTTTCTTTAACACATCAATAGTTTCATAGAATATTCTTTTACACTCGTATAGCTCCACTAGTTGTTCAAATTTAGAAGTGGAGCTGTATAACTAGTAAAGGAAAGGATTCTTGGATTGTATAAGATTTAAGTTATTGGTGGGTTTGTGCAGGAATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAG

mRNA sequence

ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGAATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAG

Coding sequence (CDS)

ATGGAATCTCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGTCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGAATGGAATCCCAAATCAAGCATGCTGTTGTGGTCAAAGTAATGGGTAGAACTGGATCTAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGTGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTAG

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR*

Homology

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BLAST of Chy2G046450 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

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BLAST of Chy2G046450 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Chy2G046450 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.3e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

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BLAST of Chy2G046450 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

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BLAST of Chy2G046450 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

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BLAST of Chy2G046450 vs. ExPASy TrEMBL
Match: A0A7J6GU77 (Dihydroorotase OS=Cannabis sativa OX=3483 GN=G4B88_006739 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.5e-57
Identity = 117/127 (92.13%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 388 MDSQVKHAVVVKIMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 447

Query: 61  ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL 120
           ARR +M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLL
Sbjct: 448 ARR-KMDSQVKHAVVVKIMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLL 507

Query: 121 ESEREAR 128
           ESEREAR
Sbjct: 508 ESEREAR 513

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BLAST of Chy2G046450 vs. ExPASy TrEMBL
Match: A0A6A5LWQ7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00018230 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.7e-56
Identity = 120/130 (92.31%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MES +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESERE
Sbjct: 42  MESAVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 101

Query: 61  ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL 120
           AR  RMES +KHA+VVKVMGRTGSRGQVTQVRVKF+DDQNR IMRNVKGPVREGDILTLL
Sbjct: 102 AR--RMESAVKHALVVKVMGRTGSRGQVTQVRVKFMDDQNRLIMRNVKGPVREGDILTLL 161

Query: 121 ESEREARRLR 131
           ESEREARRLR
Sbjct: 162 ESEREARRLR 169

[Close]

BLAST of Chy2G046450 vs. ExPASy TrEMBL
Match: F6HLE9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07210 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.3e-53
Identity = 122/172 (70.93%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           M++ +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 67  MDAGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 126

Query: 61  ARRLR------------------------------------------MESQIKHAVVVKV 120
           ARRLR                                          MES +KHAVVVKV
Sbjct: 127 ARRLRVPLLRSRRKCSKPLFFSSSSLFAEIAFLSGNSSPASRTGLCKMESGVKHAVVVKV 186

Query: 121 MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 131
           MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 187 MGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESEREARRLR 238

[Close]

BLAST of Chy2G046450 vs. ExPASy TrEMBL
Match: A0A4S8KFH7 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t29330 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.8e-44
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 28  VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQ 87
           VKFLDDQNR IMRNVKGPVREGDILTLLESEREARRLRM++Q K AVVVKVMGRTGSRGQ
Sbjct: 9   VKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLRMDTQAKLAVVVKVMGRTGSRGQ 68

Query: 88  VTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 131
           VTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 69  VTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLR 111

[Close]

BLAST of Chy2G046450 vs. ExPASy TrEMBL
Match: A0A7N0V8G3 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 72/92 (78.26%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 44  GPVR---EGDILTLLESEREAR--RLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDD 103
           GP R   E D  ++L S R ++  R+RM+SQIKHA+VVKVMGRTGSRGQVTQVRVKFLDD
Sbjct: 17  GPQRVRSESDSASVLYSSRVSQLPRVRMDSQIKHALVVKVMGRTGSRGQVTQVRVKFLDD 76

Query: 104 QNRYIMRNVKGPVREGDILTLLESEREARRLR 131
           QNR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 77  QNRFIMRNVKGPVREGDILTLLESEREARRLR 108

[Close]

BLAST of Chy2G046450 vs. NCBI nr
Match: KGN63808.2 (hypothetical protein Csa_014218 [Cucumis sativus])

HSP 1 Score: 249 bits (635), Expect = 5.80e-83
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61  ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL 120
           ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL
Sbjct: 61  ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL 120

Query: 121 ESEREARRLR 130
           ESEREARRLR
Sbjct: 121 ESEREARRLR 130

[Close]

BLAST of Chy2G046450 vs. NCBI nr
Match: KAF1866844.1 (hypothetical protein Lal_00018230 [Lupinus albus])

HSP 1 Score: 227 bits (579), Expect = 7.34e-74
Identity = 120/130 (92.31%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MES +KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESERE
Sbjct: 42  MESAVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 101

Query: 61  ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL 120
           ARR  MES +KHA+VVKVMGRTGSRGQVTQVRVKF+DDQNR IMRNVKGPVREGDILTLL
Sbjct: 102 ARR--MESAVKHALVVKVMGRTGSRGQVTQVRVKFMDDQNRLIMRNVKGPVREGDILTLL 161

Query: 121 ESEREARRLR 130
           ESEREARRLR
Sbjct: 162 ESEREARRLR 169

[Close]

BLAST of Chy2G046450 vs. NCBI nr
Match: KAF4386483.1 (hypothetical protein G4B88_006739 [Cannabis sativa])

HSP 1 Score: 230 bits (586), Expect = 1.79e-70
Identity = 117/127 (92.13%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 388 MDSQVKHAVVVKIMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 447

Query: 61  ARRLRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLL 120
           ARR +M+SQ+KHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLL
Sbjct: 448 ARR-KMDSQVKHAVVVKIMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLL 507

Query: 121 ESEREAR 127
           ESEREAR
Sbjct: 508 ESEREAR 513

[Close]

BLAST of Chy2G046450 vs. NCBI nr
Match: THU74056.1 (hypothetical protein C4D60_Mb04t29330 [Musa balbisiana])

HSP 1 Score: 184 bits (468), Expect = 9.06e-58
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 28  VKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLRMESQIKHAVVVKVMGRTGSRGQ 87
           VKFLDDQNR IMRNVKGPVREGDILTLLESEREARRLRM++Q K AVVVKVMGRTGSRGQ
Sbjct: 9   VKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLRMDTQAKLAVVVKVMGRTGSRGQ 68

Query: 88  VTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 130
           VTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 69  VTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLR 111

[Close]

BLAST of Chy2G046450 vs. NCBI nr
Match: MBC9846572.1 (hypothetical protein [Adiantum capillus-veneris])

HSP 1 Score: 177 bits (448), Expect = 2.46e-54
Identity = 99/139 (71.22%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE----GDILTLLE 60
           M+S +K A+VVKVMGRTGSRGQVTQVRVKF+DDQNR IMRNVKGPVRE      ++    
Sbjct: 1   MDSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPVREVSHSKQVIGAFV 60

Query: 61  SEREARRLRM-----ESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPV 120
           S+     L +     +S +K A+VVKVMGRTGSRGQVTQVRVKF+DDQNR IMRNVKGPV
Sbjct: 61  SQVTGLVLHISNVYQDSPVKLAIVVKVMGRTGSRGQVTQVRVKFVDDQNRLIMRNVKGPV 120

Query: 121 REGDILTLLESEREARRLR 130
           REGDIL LLESEREARRLR
Sbjct: 121 REGDILALLESEREARRLR 139

[Close]

BLAST of Chy2G046450 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Chy2G046450 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Chy2G046450 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

The following BLAST results are available for this feature:

BLAST of Chy2G046450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	1.3e-24	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	2.2e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	8.3e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	1.6e-19	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	1.6e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Chy2G046450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6GU77	3.5e-57	92.13	Dihydroorotase OS=Cannabis sativa OX=3483 GN=G4B88_006739 PE=3 SV=1	[more]
A0A6A5LWQ7	1.7e-56	92.31	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00018230 PE=3 SV=1	[more]
F6HLE9	2.3e-53	70.93	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g07210 PE=3 SV=...	[more]
A0A4S8KFH7	9.8e-44	94.17	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb04t29330 PE=3 SV=...	[more]
A0A7N0V8G3	2.2e-27	78.26	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1	[more]

BLAST of Chy2G046450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63808.2	5.80e-83	100.00	hypothetical protein Csa_014218 [Cucumis sativus]	[more]
KAF1866844.1	7.34e-74	92.31	hypothetical protein Lal_00018230 [Lupinus albus]	[more]
KAF4386483.1	1.79e-70	92.13	hypothetical protein G4B88_006739 [Cannabis sativa]	[more]
THU74056.1	9.06e-58	94.17	hypothetical protein C4D60_Mb04t29330 [Musa balbisiana]	[more]
MBC9846572.1	2.46e-54	71.22	hypothetical protein [Adiantum capillus-veneris]	[more]

BLAST of Chy2G046450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	1.6e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.6e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	5.9e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 69..129 e-value: 9.4E-32 score: 108.8 coord: 4..64 e-value: 9.4E-32 score: 108.8
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 66..130
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 1..65
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 55..130 score: 21.496159
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 6..65 e-value: 4.88816E-29 score: 98.4763
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 71..130 e-value: 4.88816E-29 score: 98.4763
None	No IPR available	GENE3D	2.40.50.140		coord: 66..130 e-value: 8.0E-36 score: 123.7 coord: 1..65 e-value: 8.0E-36 score: 123.7
None	No IPR available	PANTHER	PTHR10769:SF6	40S RIBOSOMAL PROTEIN S28-1	coord: 1..65
None	No IPR available	PANTHER	PTHR10769:SF6	40S RIBOSOMAL PROTEIN S28-1	coord: 66..130
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 56..64
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 121..129
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 66..130
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G046450.1	Chy2G046450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044205	'de novo' UMP biosynthetic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0019856	pyrimidine nucleobase biosynthetic process
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004151	dihydroorotase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome