Chy2G044150 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G044150
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	chrH02: 25704047 .. 25704529 (+)
RNA-Seq Expression	Chy2G044150
Synteny	Chy2G044150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGTAGATTCAGGTTTTATCTTCATCGGTTTCTCCTCCGTACCTCATCCCCTTTTCAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCGGATTCCACTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCATATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAATTTCACCTCTAATTAATTTCGATTTTGAGAACTGCTCTGTTTTATTTTTGTTTTCACTGAAACTGAAGTCGAATTAGGGTTTGGAATGATTAGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCAGATTCTTCGTAA

mRNA sequence

ATGGCGATGGTAGATTCAGGTTTTATCTTCATCGGTTTCTCCTCCGTACCTCATCCCCTTTTCAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCGGATTCCACTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCATATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCAGATTCTTCGTAA

Coding sequence (CDS)

ATGGCGATGGTAGATTCAGGTTTTATCTTCATCGGTTTCTCCTCCGTACCTCATCCCCTTTTCAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCGGATTCCACTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCGCTGAGAGTATCATATCCACTTCTCGCCCGATCTGTCGTTTCGGTTCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGAATTGCTTAAGATTGGAGCTTTGTTGGTGGTTCCGTTTTGTGTATTTCTCGTTTTTTCTTTCTCAAAATTTGATTCAGATTCTTCGTAA

Protein sequence

MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFSKFDSDSS*

Homology

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BLAST of Chy2G044150 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRV 60
           MAMVDS FIFIGFS VPHPL NNNNGRKFGITSAKRTQDSDSDS SSTQPNQFKFPSLRV
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60

Query: 61  SYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFSK 120
           S PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LLKIGALLVVPFCVFLVFSFSK
Sbjct: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120

Query: 121 FDSDSS 127
           +DSDSS
Sbjct: 121 YDSDSS 126

[Close]

BLAST of Chy2G044150 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.2e-55
Identity = 118/129 (91.47%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLFN---NNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPS 60
           MAMVDS FIFIG S+VPHPL N   NNNGRKFGITSAKRTQ  DSDSTSSTQPNQFKFPS
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQ--DSDSTSSTQPNQFKFPS 60

Query: 61  LRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFS 120
           LRVS PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGA LVVPFCVFLVFS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 FSKFDSDSS 127
           FSKFDSDSS
Sbjct: 121 FSKFDSDSS 127

[Close]

BLAST of Chy2G044150 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHP-LFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLR 60
           M + DS FIF G S++PHP L +NNN RKFG TSAKRT   DSDS SST   Q KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60

Query: 61  VSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFS 120
           V+ PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGA LVVPFCVFL+FSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 127
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of Chy2G044150 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.9e-40
Identity = 96/127 (75.59%), Postives = 105/127 (82.68%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPL-FNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLR 60
           M + DS FIF G S++PHPL  +NNN RKFG TSAKRT   DSDS SST   Q KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLR 60

Query: 61  VSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFS 120
           VS PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+ LKIGA LVVPFCVFL+FSFS
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 127
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of Chy2G044150 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.7e-35
Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 3   MVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSY 62
           M DS FIF G S+V   LFN NN R F    AKRT   DS +T S Q NQF+FPSLRV  
Sbjct: 1   MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRT--DDSTATKSNQENQFEFPSLRVPN 60

Query: 63  PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFSKFD 122
           PL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKIGA LVVPFCVFL+ SF+K  
Sbjct: 61  PLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAK-Q 120

Query: 123 SDSS 127
           +DSS
Sbjct: 121 TDSS 121

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BLAST of Chy2G044150 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 1.33e-77
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRV 60
           MAMVDS FIFIGFS VPHPL NNNNGRKFGITSAKRTQDSDSDS SSTQPNQFKFPSLRV
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRV 60

Query: 61  SYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFSK 120
           S PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE+LLKIGALLVVPFCVFLVFSFSK
Sbjct: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFSK 120

Query: 121 FDSDSS 126
           +DSDSS
Sbjct: 121 YDSDSS 126

[Close]

BLAST of Chy2G044150 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 223 bits (567), Expect = 1.05e-72
Identity = 118/129 (91.47%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLFNNN---NGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPS 60
           MAMVDS FIFIG S+VPHPL NNN   NGRKFGITSAKRTQDS  DSTSSTQPNQFKFPS
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDS--DSTSSTQPNQFKFPS 60

Query: 61  LRVSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFS 120
           LRVS PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGA LVVPFCVFLVFS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 FSKFDSDSS 126
           FSKFDSDSS
Sbjct: 121 FSKFDSDSS 127

[Close]

BLAST of Chy2G044150 vs. NCBI nr
Match: XP_038879768.1 (uncharacterized protein LOC120071517 [Benincasa hispida])

HSP 1 Score: 194 bits (492), Expect = 5.60e-61
Identity = 103/126 (81.75%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLFNNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLRV 60
           MAMV+S FIFIG S+VP+PL NNN+ RKF ITSAK T+DSDSDS SS    Q KFPSLRV
Sbjct: 27  MAMVNSSFIFIGVSTVPYPLSNNNHSRKFRITSAKLTEDSDSDSKSS----QLKFPSLRV 86

Query: 61  SYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFSK 120
           S PLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+EELLKIGA LVVPFCVFLVFSFS+
Sbjct: 87  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGVITKESEELLKIGAFLVVPFCVFLVFSFSR 146

Query: 121 FDSDSS 126
            DSDSS
Sbjct: 147 LDSDSS 148

[Close]

BLAST of Chy2G044150 vs. NCBI nr
Match: XP_023531156.1 (uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181 bits (460), Expect = 1.88e-56
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLF-NNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLR 60
           M + DS FIF G S++PHPL  +NNN RKFG TSAKRT DSDSDS SSTQ    KFPSLR
Sbjct: 1   MPIADSTFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSDSISSTQ---LKFPSLR 60

Query: 61  VSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFS 120
           V+ PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGA LVVPFCVFL+FSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 126
           +  +DSS
Sbjct: 121 E-QTDSS 123

[Close]

BLAST of Chy2G044150 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothetical protein SDJN03_16366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035696.1 hypothetical protein SDJN02_02494, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (442), Expect = 9.72e-54
Identity = 94/127 (74.02%), Postives = 106/127 (83.46%), Query Frame = 0


Query: 1   MAMVDSGFIFIGFSSVPHPLF-NNNNGRKFGITSAKRTQDSDSDSTSSTQPNQFKFPSLR 60
           M + DS FIF G S++PHPL  +NNN RKFG TSAKRT DSDS S++     Q KFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISST-----QLKFPSLR 60

Query: 61  VSYPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFS 120
           V+ PLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+LLKIGA LVVPFCVFL+FSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KFDSDSS 126
           +  +DSS
Sbjct: 121 E-QTDSS 121

[Close]

BLAST of Chy2G044150 vs. TAIR 10
Match: AT4G30845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 22  NNNNGRKF--GITSAKRTQDSDSDSTSSTQPNQFKFPSLRVSYP--LLARSVVSVLGLGF 81
           N+N  R F  G+T   + +D    S           P LR+  P  ++ARS ++VL LGF
Sbjct: 15  NDNKLRSFANGVTIMSKRRDFSEKSNEER-------PILRIKVPNTIVARSAIAVLSLGF 74

Query: 82  VDAGYSGDWSRIGAITKETEELLKIGALLVVPFCVFLVFSFSKFDSD 125
           +DAGYSGDWSRIG I+KETEELLKI A LVVP C+FL  SFS   +D
Sbjct: 75  IDAGYSGDWSRIGVISKETEELLKIAAFLVVPLCIFLALSFSNDSTD 114

The following BLAST results are available for this feature:

BLAST of Chy2G044150 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G044150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWH4	1.4e-58	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
A0A1S3B903	9.2e-55	91.47	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
A0A6J1EZT4	2.2e-40	75.59	uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1KT82	2.9e-40	75.59	uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016...	[more]
A0A6J1C0R6	4.7e-35	70.16	uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Chy2G044150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146667.1	1.33e-77	94.44	uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ...	[more]
XP_008443827.1	1.05e-72	91.47	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]
XP_038879768.1	5.60e-61	81.75	uncharacterized protein LOC120071517 [Benincasa hispida]	[more]
XP_023531156.1	1.88e-56	77.17	uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]	[more]
XP_022933449.1	9.72e-54	74.02	uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothet...	[more]

BLAST of Chy2G044150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30845.1	1.5e-20	50.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..53
None	No IPR available	PANTHER	PTHR38389	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G044150.1	Chy2G044150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane