Chy2G041700 (gene) Cucumber (hystrix) v1

Overview
NameChy2G041700
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPlant transposase
LocationchrH02: 22054997 .. 22055323 (+)
RNA-Seq ExpressionChy2G041700
SyntenyChy2G041700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAACAAAAAGACCTCGTTCTACAATAAAAAATACATTAGAACGACAACAATCAGATAGAACATCTGTAAAAACATCATGGAGATTCGCAAAGTCCTTCAGTATGGACTTAACTCAACTTGGTAGTGATGATGAGGCAAACGAGGGAGAAGCGATGATGAGGATTGTAAATGATACAGAAAATGTTGCTAACCCTAGTATAGAGAGAGAGATTAGGGAAACATCACCTTCTCCTAACCCACTTCACCACAACAACGTGAATTGTGAGGAAGCTACTACTCCACTTCCATCTTCAAATGTCAATACAATGAGTCATCCCTAG

mRNA sequence

ATGAAGAAAACAAAAAGACCTCGTTCTACAATAAAAAATACATTAGAACGACAACAATCAGATAGAACATCTGTAAAAACATCATGGAGATTCGCAAAGTCCTTCAGTATGGACTTAACTCAACTTGGTAGTGATGATGAGGCAAACGAGGGAGAAGCGATGATGAGGATTGTAAATGATACAGAAAATGTTGCTAACCCTAGTATAGAGAGAGAGATTAGGGAAACATCACCTTCTCCTAACCCACTTCACCACAACAACGTGAATTGTGAGGAAGCTACTACTCCACTTCCATCTTCAAATGTCAATACAATGAGTCATCCCTAG

Coding sequence (CDS)

ATGAAGAAAACAAAAAGACCTCGTTCTACAATAAAAAATACATTAGAACGACAACAATCAGATAGAACATCTGTAAAAACATCATGGAGATTCGCAAAGTCCTTCAGTATGGACTTAACTCAACTTGGTAGTGATGATGAGGCAAACGAGGGAGAAGCGATGATGAGGATTGTAAATGATACAGAAAATGTTGCTAACCCTAGTATAGAGAGAGAGATTAGGGAAACATCACCTTCTCCTAACCCACTTCACCACAACAACGTGAATTGTGAGGAAGCTACTACTCCACTTCCATCTTCAAATGTCAATACAATGAGTCATCCCTAG

Protein sequence

MKKTKRPRSTIKNTLERQQSDRTSVKTSWRFAKSFSMDLTQLGSDDEANEGEAMMRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATTPLPSSNVNTMSHP*
Homology
BLAST of Chy2G041700 vs. ExPASy TrEMBL
Match: A0A5D3BZI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002220 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-24
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 2   KKTKRPRSTIKNTLERQQSDRTSVKTSWRFAKSFSMDLTQLGSDDEANEGEAM-MRIVND 61
           KK KRPRS I +TLER++SDRT VKTSWRFAKSFSMDLTQ GSDDE NEGEA+ +R    
Sbjct: 92  KKLKRPRS-ITHTLERRRSDRTLVKTSWRFAKSFSMDLTQPGSDDEENEGEALHLR---- 151

Query: 62  TENVANPSIEREIRETSPSPNPLHHNNVNCEEATTPLPSSNVNTMSHP 109
                    EREI+ETSP P+ LHH+NV+ EEATTPLPSS+VN   HP
Sbjct: 152 ---------EREIKETSPLPDTLHHSNVDYEEATTPLPSSHVNATIHP 185

BLAST of Chy2G041700 vs. ExPASy TrEMBL
Match: A0A0A0K715 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.2e-20
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAMMRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATTP 96
           MDLTQ  SDDEANE EAMMRIVND +NVANPSIEREIRETSP  +PLHHNNVN EEATTP
Sbjct: 1   MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60

Query: 97  LPSSNV 103
           LPSS V
Sbjct: 61  LPSSQV 66

BLAST of Chy2G041700 vs. ExPASy TrEMBL
Match: A0A5A7UEP1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004490 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAM-MRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATT 96
           MDLTQ GSDDE NEGEA+ +R             EREI+ETSP P+ LHH+NV+ EEATT
Sbjct: 1   MDLTQPGSDDEENEGEALHLR-------------EREIKETSPLPDTLHHSNVDYEEATT 60

Query: 97  PLPSSNVNTMSHP 109
           PLPSS+VN   HP
Sbjct: 61  PLPSSHVNATIHP 60

BLAST of Chy2G041700 vs. ExPASy TrEMBL
Match: A0A5A7UMZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00100 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAMMRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATTP 96
           MD+TQ G DDE NEGE +               EREIRETS  P+PLHH+NV+CEE  TP
Sbjct: 1   MDVTQPGIDDEENEGEVL------------HLKEREIRETSTLPDPLHHSNVDCEEVATP 60

Query: 97  LPSSNVNTMSHP 109
            PSS+VN + HP
Sbjct: 61  FPSSHVNAIIHP 60

BLAST of Chy2G041700 vs. ExPASy TrEMBL
Match: A0A5A7SN98 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00930 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAM-MRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATT 96
           MDLTQ  SDDE N+GEA+ +R             EREIRE SP P+PLH +NV+CEEATT
Sbjct: 1   MDLTQPSSDDEKNKGEALHLR-------------EREIREISPLPDPLHQSNVDCEEATT 60

Query: 97  PLPSSNVNTMSHP 109
           P  SS+VN   HP
Sbjct: 61  PSLSSHVNATIHP 60

BLAST of Chy2G041700 vs. NCBI nr
Match: TYK04585.1 (hypothetical protein E5676_scaffold409G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 2.47e-32
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 2   KKTKRPRSTIKNTLERQQSDRTSVKTSWRFAKSFSMDLTQLGSDDEANEGEAM-MRIVND 61
           KK KRPRS I +TLER++SDRT VKTSWRFAKSFSMDLTQ GSDDE NEGEA+ +R    
Sbjct: 92  KKLKRPRS-ITHTLERRRSDRTLVKTSWRFAKSFSMDLTQPGSDDEENEGEALHLR---- 151

Query: 62  TENVANPSIEREIRETSPSPNPLHHNNVNCEEATTPLPSSNVNTMSHP 108
                    EREI+ETSP P+ LHH+NV+ EEATTPLPSS+VN   HP
Sbjct: 152 ---------EREIKETSPLPDTLHHSNVDYEEATTPLPSSHVNATIHP 185

BLAST of Chy2G041700 vs. NCBI nr
Match: KGN44082.1 (hypothetical protein Csa_016717 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 1.92e-27
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAMMRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATTP 96
           MDLTQ  SDDEANE EAMMRIVND +NVANPSIEREIRETSP  +PLHHNNVN EEATTP
Sbjct: 1   MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60

Query: 97  LPSSNV 102
           LPSS V
Sbjct: 61  LPSSQV 66

BLAST of Chy2G041700 vs. NCBI nr
Match: KAA0051969.1 (hypothetical protein E6C27_scaffold60G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 8.60e-16
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAM-MRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATT 96
           MDLTQ GSDDE NEGEA+ +R             EREI+ETSP P+ LHH+NV+ EEATT
Sbjct: 1   MDLTQPGSDDEENEGEALHLR-------------EREIKETSPLPDTLHHSNVDYEEATT 60

Query: 97  PLPSSNVNTMSHP 108
           PLPSS+VN   HP
Sbjct: 61  PLPSSHVNATIHP 60

BLAST of Chy2G041700 vs. NCBI nr
Match: KAA0055646.1 (hypothetical protein E6C27_scaffold181G00110 [Cucumis melo var. makuwa] >TYK09900.1 hypothetical protein E5676_scaffold16G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 8.69e-14
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAMMRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATTP 96
           MD+TQ G DDE NEGE +               EREIRETS  P+PLHH+NV+CEE  TP
Sbjct: 1   MDVTQPGIDDEENEGEVLHLK------------EREIRETSTLPDPLHHSNVDCEEVATP 60

Query: 97  LPSSNVNTMSHP 108
            PSS+VN + HP
Sbjct: 61  FPSSHVNAIIHP 60

BLAST of Chy2G041700 vs. NCBI nr
Match: TYK17066.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.40e-11
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 37  MDLTQLGSDDEANEGEAM-MRIVNDTENVANPSIEREIRETSPSPNPLHHNNVNCEEATT 96
           MDLTQ  SDDE N+GEA+ +R             EREIRE SP P+PLH +NV+CEEATT
Sbjct: 1   MDLTQPSSDDEKNKGEALHLR-------------EREIREISPLPDPLHQSNVDCEEATT 60

Query: 97  PLPSSNVNTMSHP 108
           P  SS+VN   HP
Sbjct: 61  PSLSSHVNATIHP 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZI85.5e-2466.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K7158.2e-2084.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1[more]
A0A5A7UEP11.6e-1060.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UMZ22.9e-0954.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SN981.9e-0856.16Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00... [more]
Match NameE-valueIdentityDescription
TYK04585.12.47e-3266.67hypothetical protein E5676_scaffold409G002220 [Cucumis melo var. makuwa][more]
KGN44082.11.92e-2784.85hypothetical protein Csa_016717 [Cucumis sativus][more]
KAA0051969.18.60e-1660.27hypothetical protein E6C27_scaffold60G004490 [Cucumis melo var. makuwa][more]
KAA0055646.18.69e-1454.17hypothetical protein E6C27_scaffold181G00110 [Cucumis melo var. makuwa] >TYK0990... [more]
TYK17066.14.40e-1156.16Plant transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G041700.1Chy2G041700.1mRNA