Chy2G037670 (gene) Cucumber (hystrix) v1

Overview
NameChy2G037670
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTranspos_assoc domain-containing protein
LocationchrH02: 12555399 .. 12555619 (-)
RNA-Seq ExpressionChy2G037670
SyntenyChy2G037670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTTATTGGATAACATGGATAGAAGTTGGATGCAAATTGGAACTCAAGTATTGGAAGAATACAAAAATGGAGTTAGAAGTTTTTTAGATTTTGAGTTTATGCATACAACATCAAATCATATATCTTATCCATGCAAGAGATGTAATAATGCAGTACTTAAAACTCGAGATGATGTTAAAGCAGATTTGTTGGTGTATGGAATAGTTCCAAATTACACTAG

mRNA sequence

GTGTTATTGGATAACATGGATAGAAGTTGGATGCAAATTGGAACTCAAGTATTGGAAGAATACAAAAATGGAGTTAGAAGTTTTTTAGATTTTGAGTTTATGCATACAACATCAAATCATATATCTTATCCATGCAAGAGATGTAATAATGCAGTACTTAAAACTCGAGATGATGTTAAAGCAGATTTGTTGGTGTATGGAATAGTTCCAAATTACACTAG

Coding sequence (CDS)

GTGTTATTGGATAACATGGATAGAAGTTGGATGCAAATTGGAACTCAAGTATTGGAAGAATACAAAAATGGAGTTAGAAGTTTTTTAGATTTTGAGTTTATGCATACAACATCAAATCATATATCTTATCCATGCAAGAGATGTAATAATGCAGTACTTAAAACTCGAGATGATGTTAAAGCAGATTTGTTGGTGTATGGAATAGTTCCAAATTACACTAG

Protein sequence

VLLDNMDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISYPCKRCNNAVLKTRDDVKADLLVYGIVPNYTX
Homology
BLAST of Chy2G037670 vs. ExPASy TrEMBL
Match: A0A7N2LSD7 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTT-SNHISYPCKRCNNAVLKTRDDVKADLL 65
          M+R+W+++  + L EY+ G++ FLDF F HTT  + I  PCK+CNN   KTRDDV+ADLL
Sbjct: 1  MERNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGDKIYCPCKKCNNYFAKTRDDVEADLL 60

Query: 66 VYGIVPNYT 74
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

BLAST of Chy2G037670 vs. ExPASy TrEMBL
Match: A0A7N2LJE8 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISY-PCKRCNNAVLKTRDDVKADLL 65
          M+ +W+++  + L EY+ G++ FLDF F HTT  +  Y PCK+CNN   KTRDDV+ADLL
Sbjct: 1  MEWNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGYKIYCPCKKCNNYFAKTRDDVEADLL 60

Query: 66 VYGIVPNYT 74
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

BLAST of Chy2G037670 vs. ExPASy TrEMBL
Match: A0A7N2KKH6 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISY-PCKRCNNAVLKTRDDVKADLL 65
          M+ +W+++  + L EY+ G++ FLDF F HTT  +  Y PCK+CNN   KTRDDV+ADLL
Sbjct: 1  MEWNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGYKIYCPCKKCNNYFAKTRDDVEADLL 60

Query: 66 VYGIVPNYT 74
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

BLAST of Chy2G037670 vs. ExPASy TrEMBL
Match: A0A2N9GUI6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30961 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 6   MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTT-SNHISYPCKRCNNAVLKTRDDVKADLL 65
           M+ +W++I  + L EY+ GV+ FLDF F HTT  + I  PCKRCN+   K+RDDV+ADL+
Sbjct: 83  MEHNWVKIRNRALPEYRQGVKEFLDFAFEHTTMEDKILCPCKRCNHYFAKSRDDVEADLI 142

Query: 66  VYGIVPNYT 74
             GIVP YT
Sbjct: 143 TIGIVPTYT 151

BLAST of Chy2G037670 vs. ExPASy TrEMBL
Match: A0A7N2R2F0 (Transpos_assoc domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-13
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISY-PCKRCNNAVLKTRDDVKADLL 65
          M+++W+++G + L +Y+ G++ FLDF F HTT    ++  CK+CNN   KTRDDV+ADLL
Sbjct: 1  MEQNWVKLGYRALPKYRQGIKDFLDFAFKHTTVGDKNFCLCKQCNNYFAKTRDDVEADLL 60

Query: 66 VYGIVPNYT 74
            GI+PNYT
Sbjct: 61 TIGILPNYT 69

BLAST of Chy2G037670 vs. NCBI nr
Match: XP_038882387.1 (uncharacterized protein LOC120073655 [Benincasa hispida])

HSP 1 Score: 114 bits (285), Expect = 6.61e-29
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISYPCKRCNNAVLKTRDDVKADLLV 65
          MDRSWMQIG +VL+EY+NGVRSFLDF FMH T+  IS PCKRCNN VLKTRD+V+ DLL+
Sbjct: 1  MDRSWMQIGNRVLQEYRNGVRSFLDFAFMHATTTQISCPCKRCNNVVLKTRDNVEEDLLM 60

Query: 66 YGIVPNY 72
          +GIVP+Y
Sbjct: 61 FGIVPSY 67

BLAST of Chy2G037670 vs. NCBI nr
Match: XP_030950831.1 (uncharacterized protein LOC115974558 [Quercus lobata])

HSP 1 Score: 82.8 bits (203), Expect = 8.50e-18
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISY-PCKRCNNAVLKTRDDVKADLL 65
          M+ +W+++  + L EY+ G++ FLDF F HTT  +  Y PCK+CNN   KTRDDV+ADLL
Sbjct: 1  MEWNWVKLRNRALLEYRQGIKDFLDFAFEHTTMGYKIYCPCKKCNNYFAKTRDDVEADLL 60

Query: 66 VYGIVPNYT 73
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

BLAST of Chy2G037670 vs. NCBI nr
Match: KAF3963785.1 (hypothetical protein CMV_011859 [Castanea mollissima])

HSP 1 Score: 84.0 bits (206), Expect = 9.09e-17
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTTSNHISY-PCKRCNNAVLKTRDDVKADLL 65
          M+ +W+++  + L EY+ GV+ FLDF F HTT  + ++ PCKRCNN   KTRDDV+ DLL
Sbjct: 1  MEHNWVKLRNRALPEYRQGVKDFLDFAFEHTTMGNKNFCPCKRCNNYFAKTRDDVEGDLL 60

Query: 66 VYGIVPNYT 73
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

BLAST of Chy2G037670 vs. NCBI nr
Match: XP_030953586.1 (uncharacterized protein LOC115976445 [Quercus lobata] >XP_030953587.1 uncharacterized protein LOC115976445 [Quercus lobata])

HSP 1 Score: 83.2 bits (204), Expect = 1.72e-16
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTT-SNHISYPCKRCNNAVLKTRDDVKADLL 65
          M+ +W+++ ++   EY+ GV+ FLDF F HTT  N I  PCKRCNN   KTRDDV+ DLL
Sbjct: 1  MEHNWVKLRSRAHPEYRQGVKDFLDFAFEHTTMGNKIFCPCKRCNNYFAKTRDDVEGDLL 60

Query: 66 VYGIVPNYT 73
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

BLAST of Chy2G037670 vs. NCBI nr
Match: XP_023893229.1 (uncharacterized protein LOC112005206 [Quercus suber])

HSP 1 Score: 82.8 bits (203), Expect = 2.36e-16
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 6  MDRSWMQIGTQVLEEYKNGVRSFLDFEFMHTT-SNHISYPCKRCNNAVLKTRDDVKADLL 65
          M+ +W+++  +   EY+ GV+ FLDF F HTT  N I  PCKRCNN   KTRDDV+ DLL
Sbjct: 1  MEHNWVKLRNRAHPEYRQGVKDFLDFAFEHTTMGNKIFCPCKRCNNYFAKTRDDVEGDLL 60

Query: 66 VYGIVPNYT 73
            GI+P+YT
Sbjct: 61 TIGILPSYT 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7N2LSD71.0e-1353.62Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A7N2LJE83.9e-1352.17Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A7N2KKH63.9e-1352.17Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A2N9GUI65.1e-1353.62Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30961 PE=4 SV=1[more]
A0A7N2R2F06.6e-1350.72Transpos_assoc domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038882387.16.61e-2974.63uncharacterized protein LOC120073655 [Benincasa hispida][more]
XP_030950831.18.50e-1852.17uncharacterized protein LOC115974558 [Quercus lobata][more]
KAF3963785.19.09e-1752.17hypothetical protein CMV_011859 [Castanea mollissima][more]
XP_030953586.11.72e-1653.62uncharacterized protein LOC115976445 [Quercus lobata] >XP_030953587.1 uncharacte... [more]
XP_023893229.12.36e-1653.62uncharacterized protein LOC112005206 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 8..73
e-value: 5.5E-16
score: 58.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G037670.1Chy2G037670.1mRNA