Chy2G037390 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G037390
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L13a-4
Location	chrH02: 11864403 .. 11870186 (-)
RNA-Seq Expression	Chy2G037390
Synteny	Chy2G037390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGGATATGCAGCGACTGCTGGAACTCGAAGCCAAGGTCACGAAGCACATGGAGAAGATTGACTTGCAGAACGAATTGAATACACAACAGCAACAGAAAATTCTGAAACATACTAAAAGTATGATGAAGGATCCATCTTCATCAAAACCAGAATCAGAAAGGTCATCAAGCAAAATGAAGAAAAAAATGCTCGAGTTAAATGAGGAGCCAAAACACAACGATAAAAGCAATGACCGGAGTAAATTCAAGAAGGTAGATATGTTGGTATTTAATGGCAAAGACCCAGACTCTTGATTGTTCCGTGTCGATAGATAATTCCAGATTCACAAGTTGACGGACTCTGAAAAGATGACGGTTGTGATAGATTAGCTTTGATGGAATGACGTTGAGTTGGTTCAGGGCCCAAGAAGAGCGGAAAAAATTCACAGGATGGTCGAATTTAAAAGAGAGGTTGCTAGTACGATTCCGATCGACGAGAGAAAGCTCTATATGACGTCAATTTCTGAGAATCAGGCAAGAACCACCGTGGAAGAATATCGAAATTTGTTTGACAAACTGATGGCGCCATTATTGGACTTGCAAGATCGAGTGGTTGAATAAACTTTCATGAATGGGTTGTTACCATGGATCAAGGCGGAAGTTGAAGTCGGCCGATCGGTTGGTTTAGCCCAAATGATGTAGTTAGCGCAACTCGTGAAGAATTGGGAAATCATTCGTAATGAAGCCAATCTCAAAGGCTACGCATGAGGTAATTCCTATTATTCCAACGCTTTTAAATCTAAACCTGGGGCAGGAACGAGTAGTACTGAGAGCAAAGGTAACAAAACTTTCTAATGAGGACGATCACACTGAGAGAAGGAGGGACAGGAGAAATAAAAGAAGGACTATGTATTGAAGAGGTTAAGTGATGAAGAATTTCAGGCGAGGAAAGAAAATGGGCTATGCTTTCGTTGCAATGCAAAATTTTCTCATGGCCATAAATGTATGGTGAAAAAACAGAGAGAACTTAAGATATTTGTAGTCAATGTCGACAATGAAGAATGAGAAATTGTGGAAGAGATAGATGATGAAAAAAAAGAACTGAACATGGTACAAGAGGCAAATGATGACCAAGCAGTGATAAAACTATCCATTAACTCGGTTGTAGGGTTATCCAACCCGAGAACCATGAAGGTTAAAGGAAGAATTGAGGAGAGGGAAGTAGTAATTCTGATAGATTGTGGGGCTACCCATAATTTTCATTTATGATAAGGTGGTGAAAGAGTTGCAACTAGCAACTAAAAATACCTCACATTATGGGGTTATCTTAGAATCTGGCACATCAGTTAAAGGCAAGGGGATTTGTGAAGCAGTAGAAGTAATCTTGAGTGGGTGGAAGATAGTAGCCAATTTGCTACCATTGGAGTTAGGGGGAGTAGAGGTGGTGTTGGGTATGCAGTGGTTGTACTCCTTGGGCATCACTGAAGTAGATTGAAGGAATTTGACAATGACGGTCATCCATCAAGGCAAGAAGGTGATTATTAAAGGAGATCCCAACTTGACTAAATCCAGGGTCAGCTTAAAGAAAATGATGAAGACTTGGGATAATTCTGACCAAGGATTCCTAGTTGAATGTCGTGCCATGGAGGAAAGAATAACGACAGAAGAAGAAGATGATATTGAAGAAGTACTGATAGTAGAAAAATCAGTATCGGTGGTCCTGAAGAAATTTGAGGATCTGTTCACATGGCCTGAAAAACTACCACCAAGAAGAGATTGAGCACCACGTTCACCTAAAAAAGGACACTGATCTAGTAAATGTAAGACCATACCGTTATCCATACCAGTAGATGATTGAAATGGAGAAGCTTGTGGAAGAAATGTTGACCTCAGGAATAATCCGACCAAGCAACAATCCTTATTCCAGTCCGGTATTGTTAGTAAGAAAGAAAGATAGAAGCTGGCGATTTTGCGTGGATTATAGGGCACTGAACAACGTGACAATATCAGATAAATTTCCCATTCCCATCATTGAAGATTTATTCGATGAATTGAATGGAGCAGCATGGTTTTTGAAGATCGATTTGAAGGCAGGATACCACTAGATTCATATGTGTGGAGAAGATATTGAAAAAACAGCATTTCGAACTCATGAAGGCCATTACGAGTTCATGGTCATGTCTTTCAGATTGACTAATGCACCATCAACATTTCAATCCCTGATGAATTCGATATCAAGCCTACTTGGGGAAGTTCATGTTAGTATTTTTTGATGATATCCTAATCTATAGCAAGGATTTGGAAACGCATCTGCAACATCTTGGGCTAGCTTTGCAAGTATTAAGAAAAAATGAATTGTATGCTAACTAGAAGAAGTGTGGTGGATTATCTAGGGCACATCATATCGGGACAAGGTGTTGTAGTGGATCCTGGGAAAAAACGAGCCATCAAGGAGTGGCCAATCCCTACCAATGTCCGAGAAGTAAGAGGTTGTTTTGGGATTAACTGGTTACTACTGGAAGTTTGAACAACATTATGGTTTCATTGCTGCATCGTTGACACAATTGTTGAAATGAGGAGGATTTAAATGGAATGAAGAAGCGCAAGAAGCGTTCTTGAAATTACAACAAGCCAGGATGACTCTTCCAGTTCTAGCATTACCAGACTTTAATGCTCCCTTTGAAATAGAGATAGACGCATCAGGGTTTGGAATTGGAGCGGTGTTGATATAGTCTGAGCGGACAATTGCTTACTTTAGTCACACACTAGCAGTTAGGGATCTGGCTAAACCATTGTATGAAAGGGAGTTGATGGCTGTAGTATTGGCTATGCAAAGGTGGAGGCCATACCTGTTATGAAGGAAATTTCTAGTAAAGACAGACCAATGTTCGCTAAAGTTTTTGTTAAAGGAAAGGGTGATTCAACCCCAATATCAAAAGTGGATAGCTAAGCTTCTAGGCTACTGATTTGAAGTGTTGTAATAAACCTGGATTAGAGAAAAAAGCAGCGGATGCATTGTCAAGAATGCCACCTACTGTCCATTTATGTAGTTTGACAACAACATCCTTGATTGATTTACAAGTAATTAAAGAAGAAGTAGAAAAGGATGAAAGTCTGAAGAAAGTCTTAACAGAGGTAGAAAAAAGAGAGGCAAAGAATGTTGAGGTACGGAGATCAATTGGTAATTTCTAAAACCTCAACACTAATTCCTACAATTCCCCATACGTATCACGAATATGTTTTTGGAAGTCACTCAGGTTTTTTATGAACCTATAAGAGGCTAGCAGGAGAATTACATTGAGAAGACATGAAGCAAGTAGTAAAGAAGTACTGCAAGAAGTGCCTTGTCTGCCAAAGAAACAAAACATTATCCTTATCACTAGCCGAATTGCTATTACCCTTGGAGATTTCGAACAAAGTATGGAATGACATCTCCATGGACTTTATTGAAAGGCTACTAAGTCCAAAGGGTTCAAAGTCATCGTTGTGGTGGTAGACCGTTTGAGCAAGTATGGGCATTTCTTACCATTGAAACACCCATATATGACTGAGACAGTCGCAGACTTGTTTGTAAAGGAGATAGTCCAGCTACATGGATATCCCAGCTCTATAGTATCTGATCGTGATAAGATATTTTTGAGAAGTTTTTGGAAGGAGTTGTTTAGAATGGCAGGAACCAAGGTTGACCGGAGTTCAGCGTATCATCCCCAATCGATGGTCAAACAGAGGTGGTTAATAGAGGAGTAGAGACATTCCTACGTTGCTTTTGTAGAGAAATACCAAAAGAATGGGCTGAATGGATACACTGGACGGAGTATTGGTACAATACAACGTATCGAAGGTCCCTAGGAATAACGCCATTTCAGGCAGTCTATGGGAGATTACCACCTCCGTTGATTTATTATGGAGATCGTGACACGCCCAATTCGACTTTGGATGAACAGCTTAAAGAAATGGACATTGCCTTGGGAGTAATGAAAGAGCACCCTGAAGGTGGCTTAGAAAAAAATGAAGAAAAATGCGAATTTGAAGCGTAGGGAAATGGAGTATAAGGTGTTTTTGAAATTACGGCCGTATAAACAAGTGTTATTGTGTAAGATGAGGAATGAGAAGCTTTCTCCTAAGTTTTTTGGTTCGTGTGAAGTTTTGGAGCGAATTGGACCCGCTGCCTATAAATTGAAGCTGTCAGACACAACAACCATACATCCTGTTTCCACGTTTCCCAATTAAAGAAGCTGATGGGAGAACACCAACAAGTGCAGGTTGACATGATCTATCTTACAAACAATCATGAGTGGCAGGCAGAACCTGAAGAGGTATATGGTTATCTAAGGAAGAAAGGCAATAGTTGAGAGGTGTTGATTAGATGGAAGGGGTTACCTAGACACGAGGGCCACATGCATGGAAAGATTATGATAAAATGCAATAGCGCTATCTCTAGTTTCACCTTGAGGACAAGGTGAATTTGGAGAAGGAGTGTAATGATAGACCCCCATAATACACCAATATAGTAGAAGGAAGAAGAAAAGTTAGTTAATATGTTAGTCGAGTGGTTAAGGGATACAATTAATACTGTTAGTATAAATAAATGTTAGATAGGAGGGAAGGGTAGATAAGTTTTTAGTGAAGAAAAGAGTTAGGCTTCTGTGCACCTTTGAGAGATAAGGTAACAAGAGAGAAGAACTTACGAATTGAAGCATTCTCAATTCGAGAAGTATATTCCATTGATTGTGAGGGTGTAACTGATTACTATCAATAAAGTTTACCTTTGAATTCAAGTTCGAGTTCCATCAGTTTGATTGTAGAATCCAATTTCATGGGTTACTATGTTTGGTCGGTGAACTGTTAGGCTTTTGAATACAATTTCAATTCCTTAATGAAAATAATTATTTTTCCTGCTATGCTTCTAGACTAGGGGGTTAGGTTAATCCTGTATCTGTTTTGAATTGTAATTTCATAATTTTTCCTCCTATGCTTTTAGATTAGGGGGTTAGGTTAATCTTGTATCTATTTCGAATTGTAATTCCACAATGTATTTAGTAGATAGGTTGATAGCTTAAGATGCTTCGCTTGTGGGTTTCTTAGGATGATCCCACACAAGACAAAGCGTGGAGCTGCTGCTCTTACTCGTTTGAAGGTATATGAAGGTGGTCCTCCTCCCTATGATAATTAGATGAAGAGGATGGTCATCCCTGACGCTCTCAAGTGAGTTTTAGGACGATGTCTTCATGTTATATTTGTAGAGCCAATAAGCAAGGGTGAATTTTTTCTTTATACATGTAGTATATAATCTTAGTTATGAGTTCAAATTTTTGGATACAAATGGATTAATCCTAGTAATGCCTAATTTTCTTTGACATATTCTCTCTATTGTAATATTAGAGTTTTGAGGCTTCAAGCAGGACACAAATACTGCTTGTTGGGCAGACTCTCATGCATGTAGTACTTTAGTAGTATGGAAACCTTCATCCATTGTTTGCCTATAATGGTATGGAGTTCATTAAATATAATAATCTATCATCTCAGACATGTGGAATGTTGAATGGAAGGAATAATTACTATGTACTACTAAGCAGTATTAGAAAATTTCCCATTTTGAATAGATGATGGTGGCTCTATAAACTTATTATGATTTCTTTGTTTTCGTTCTCTCAGGAGCTTCAAAGGAAGAGGGAAGAGAGGTCTCAAGCTGCGTACGAGAAAAAGAAGAAGTTGACTAAGTTGAGGGTCAAAGTCGAGAAGGTTGCAAACGAGAAGCTCGATCCCCAATTGCAAGTAATAGCTCCAATTAAATACTAG

mRNA sequence

ATGAAAGAGGATATGCAGCGACTGCTGGAACTCGAAGCCAAGGTCACGAAGCACATGGAGAAGATTGACTTGCAGAACGAATTGAATACACAACAGCAACAGAAAATTCTGAAACATACTAAAAGTATGATGAAGGATCCATCTTCATCAAAACCAGAATCAGAAAGGATGATCCCACACAAGACAAAGCGTGGAGCTGCTGCTCTTACTCGTTTGAAGGAGCTTCAAAGGAAGAGGGAAGAGAGGTCTCAAGCTGCGTACGAGAAAAAGAAGAAGTTGACTAAGTTGAGGGTCAAAGTCGAGAAGGTTGCAAACGAGAAGCTCGATCCCCAATTGCAAGTAATAGCTCCAATTAAATACTAG

Coding sequence (CDS)

ATGAAAGAGGATATGCAGCGACTGCTGGAACTCGAAGCCAAGGTCACGAAGCACATGGAGAAGATTGACTTGCAGAACGAATTGAATACACAACAGCAACAGAAAATTCTGAAACATACTAAAAGTATGATGAAGGATCCATCTTCATCAAAACCAGAATCAGAAAGGATGATCCCACACAAGACAAAGCGTGGAGCTGCTGCTCTTACTCGTTTGAAGGAGCTTCAAAGGAAGAGGGAAGAGAGGTCTCAAGCTGCGTACGAGAAAAAGAAGAAGTTGACTAAGTTGAGGGTCAAAGTCGAGAAGGTTGCAAACGAGAAGCTCGATCCCCAATTGCAAGTAATAGCTCCAATTAAATACTAG

Protein sequence

MKEDMQRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESERMIPHKTKRGAAALTRLKELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY*

Homology

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BLAST of Chy2G037390 vs. ExPASy Swiss-Prot
Match: Q9LRX8 (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13AB PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 62/178 (34.83%), Postives = 76/178 (42.70%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  ++ V    E+I L   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQSVVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  VRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. ExPASy Swiss-Prot
Match: Q9SVR0 (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-07
Identity = 59/178 (33.15%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQEVVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  VRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. ExPASy Swiss-Prot
Match: Q9SFU1 (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-07
Identity = 59/176 (33.52%), Postives = 74/176 (42.05%), Query Frame = 0


Query: 8   LLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER----------- 67
           LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R           
Sbjct: 32  LLNGQNIVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVR 91

Query: 68  -MIPHKTKRGAAALTRL------------------------------------------- 121
            MIPHKTKRGA AL RL                                           
Sbjct: 92  GMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEV 151

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BLAST of Chy2G037390 vs. ExPASy Swiss-Prot
Match: Q9FKC0 (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.5e-07
Identity = 58/178 (32.58%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQKVVIVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  VRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. ExPASy Swiss-Prot
Match: O49885 (60S ribosomal protein L13a OS=Lupinus luteus OX=3873 GN=RPL13A PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-06
Identity = 56/177 (31.64%), Postives = 73/177 (41.24%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKP-----------ES 65
           + LL  +  V    E+I +   L  +Q+ K L+  +  M    S  P             
Sbjct: 30  KELLNGQKVVIVRSEEICISGGL-VRQKMKYLRFLRKRMNTKPSHGPIHCAPSKIFWRTV 89

Query: 66  ERMIPHKTKRGAAALTRL------------------------------------------ 121
             MIPHKTKRG  AL RL                                          
Sbjct: 90  RGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSE 149

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BLAST of Chy2G037390 vs. ExPASy TrEMBL
Match: A0A5D3D5Q4 (60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00990 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 53/115 (46.09%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 57  MIPHKTKRGAAALTRL-------------------------------------------- 116
           MIPHKTKRGAAAL RL                                            
Sbjct: 1   MIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 60

Query: 117 -------KELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY 121
                  KEL+RKR+ERSQAAYE+KK+L KLR+K EKVA EKL PQL+VIAPIKY
Sbjct: 61  WNHYDTIKELERKRKERSQAAYERKKQLNKLRIKAEKVAEEKLGPQLEVIAPIKY 115

[Close]

BLAST of Chy2G037390 vs. ExPASy TrEMBL
Match: A0A5A7U034 (60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002690 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 69/178 (38.76%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I +   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQKVVVVRCEEICISGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  IRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. ExPASy TrEMBL
Match: A0A0A0L439 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131930 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 69/178 (38.76%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I +   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQKVVVVRCEEICISGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  IRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

[Close]

BLAST of Chy2G037390 vs. ExPASy TrEMBL
Match: A0A1S3AW63 (60S ribosomal protein L13a-2-like OS=Cucumis melo OX=3656 GN=LOC103483483 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 69/178 (38.76%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I +   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQKVVVVRCEEICISGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  IRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

[Close]

BLAST of Chy2G037390 vs. ExPASy TrEMBL
Match: A0A6J1EAG0 (60S ribosomal protein L13a-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432187 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-09
Identity = 68/178 (38.20%), Postives = 82/178 (46.07%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I +   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQKVVLVRCEEICISGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIIWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  IRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. NCBI nr
Match: XP_004133995.1 (60S ribosomal protein L13a-2 [Cucumis sativus] >XP_008438365.1 PREDICTED: 60S ribosomal protein L13a-2-like [Cucumis melo] >KAA0049152.1 60S ribosomal protein L13a-4 [Cucumis melo var. makuwa] >KGN56740.1 hypothetical protein Csa_009815 [Cucumis sativus] >TYK17407.1 60S ribosomal protein L13a-4 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.21e-15
Identity = 57/115 (49.57%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 57  MIPHKTKRGAAALTRLK------------------------------------------- 116
           MIPHKTKRGAAAL RLK                                           
Sbjct: 92  MIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 151

Query: 117 --------ELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY 120
                   EL+RKR+ERSQAAYEKKK+LTKLRVK EKVA+EKL PQLQVIAPIKY
Sbjct: 152 WNHYDTIKELERKRKERSQAAYEKKKQLTKLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Chy2G037390 vs. NCBI nr
Match: XP_022924796.1 (60S ribosomal protein L13a-4-like isoform X1 [Cucurbita moschata] >XP_023529032.1 60S ribosomal protein L13a-4-like [Cucurbita pepo subsp. pepo] >KAG6582470.1 60S ribosomal protein L13a-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018859.1 60S ribosomal protein L13a-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 3.35e-15
Identity = 56/115 (48.70%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 57  MIPHKTKRGAAALTRLK------------------------------------------- 116
           MIPHKTKRGAAAL RLK                                           
Sbjct: 92  MIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 151

Query: 117 --------ELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY 120
                   EL+RKR+ER+QAAYEKKK+LTKLRVK EKVA+EKL PQLQVIAPIKY
Sbjct: 152 WNHYDTIKELERKRKERAQAAYEKKKQLTKLRVKAEKVADEKLGPQLQVIAPIKY 206

[Close]

BLAST of Chy2G037390 vs. NCBI nr
Match: XP_022147118.1 (60S ribosomal protein L13a-4-like [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 9.28e-15
Identity = 55/115 (47.83%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 57  MIPHKTKRGAAALTRLK------------------------------------------- 116
           MIPHKTKRGAAAL RLK                                           
Sbjct: 92  MIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 151

Query: 117 --------ELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY 120
                   EL+RKR+ER+QAAYEKKK+LTKLRVK EKVA+EKL PQL+VIAPIKY
Sbjct: 152 WNHYDTIKELERKRKERAQAAYEKKKQLTKLRVKAEKVADEKLGPQLEVIAPIKY 206

[Close]

BLAST of Chy2G037390 vs. NCBI nr
Match: TYK18889.1 (60S ribosomal protein L13a-4 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.35e-14
Identity = 53/115 (46.09%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 57  MIPHKTKRGAAALTRLK------------------------------------------- 116
           MIPHKTKRGAAAL RLK                                           
Sbjct: 1   MIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 60

Query: 117 --------ELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY 120
                   EL+RKR+ERSQAAYE+KK+L KLR+K EKVA EKL PQL+VIAPIKY
Sbjct: 61  WNHYDTIKELERKRKERSQAAYERKKQLNKLRIKAEKVAEEKLGPQLEVIAPIKY 115

[Close]

BLAST of Chy2G037390 vs. NCBI nr
Match: MBS2599559.1 (50S ribosomal protein L13 [Salmonella enterica subsp. enterica serovar Typhimurium])

HSP 1 Score: 75.1 bits (183), Expect = 3.71e-14
Identity = 53/115 (46.09%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 57  MIPHKTKRGAAALTRLK------------------------------------------- 116
           MIPHKTKRGAAAL RLK                                           
Sbjct: 43  MIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVG 102

Query: 117 --------ELQRKREERSQAAYEKKKKLTKLRVKVEKVANEKLDPQLQVIAPIKY 120
                   EL+RKR+ERSQAAYE+KK+L KLR+K EKVA EKL PQL+VIAPIKY
Sbjct: 103 WNHYDTIKELERKRKERSQAAYERKKQLNKLRIKAEKVAEEKLGPQLEVIAPIKY 157

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BLAST of Chy2G037390 vs. TAIR 10
Match: AT3G24830.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 57.4 bits (137), Expect = 9.3e-09
Identity = 62/178 (34.83%), Postives = 76/178 (42.70%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  ++ V    E+I L   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQSVVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  VRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. TAIR 10
Match: AT4G13170.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-08
Identity = 59/178 (33.15%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQEVVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  VRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSS 149

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BLAST of Chy2G037390 vs. TAIR 10
Match: AT3G07110.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-08
Identity = 59/176 (33.52%), Postives = 74/176 (42.05%), Query Frame = 0


Query: 8   LLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER----------- 67
           LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R           
Sbjct: 32  LLNGQNIVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVR 91

Query: 68  -MIPHKTKRGAAALTRL------------------------------------------- 121
            MIPHKTKRGA AL RL                                           
Sbjct: 92  GMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEV 151

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BLAST of Chy2G037390 vs. TAIR 10
Match: AT3G07110.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-08
Identity = 59/177 (33.33%), Postives = 74/177 (41.81%), Query Frame = 0


Query: 8   LLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER----------- 67
           LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R           
Sbjct: 32  LLNGQNIVVVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVR 91

Query: 68  -MIPHKTKRGAAALTRLK------------------------------------------ 121
            MIPHKTKRGA AL RLK                                          
Sbjct: 92  GMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEV 151

[Close]

BLAST of Chy2G037390 vs. TAIR 10
Match: AT5G48760.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-08
Identity = 58/178 (32.58%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 6   QRLLELEAKVTKHMEKIDLQNELNTQQQQKILKHTKSMMKDPSSSKPESER--------- 65
           + LL  +  V    E+I L   L  +Q+ K ++  +  M    S  P   R         
Sbjct: 30  KELLNGQKVVIVRCEEICLSGGL-VRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRT 89

Query: 66  ---MIPHKTKRGAAALTRL----------------------------------------- 121
              MIPHKTKRGAAAL RL                                         
Sbjct: 90  VRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSS 149

The following BLAST results are available for this feature:

BLAST of Chy2G037390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRX8	1.3e-07	34.83	60S ribosomal protein L13a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13AB PE=2 SV=...	[more]
Q9SVR0	5.0e-07	33.15	60S ribosomal protein L13a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13AC PE=2 SV=...	[more]
Q9SFU1	6.5e-07	33.52	60S ribosomal protein L13a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13AA PE=2 SV=...	[more]
Q9FKC0	8.5e-07	32.58	60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=...	[more]
O49885	4.2e-06	31.64	60S ribosomal protein L13a OS=Lupinus luteus OX=3873 GN=RPL13A PE=2 SV=1	[more]

BLAST of Chy2G037390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5Q4	2.9e-10	46.09	60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7U034	1.1e-09	38.76	60S ribosomal protein L13a-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0L439	1.1e-09	38.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G131930 PE=3 SV=1	[more]
A0A1S3AW63	1.1e-09	38.76	60S ribosomal protein L13a-2-like OS=Cucumis melo OX=3656 GN=LOC103483483 PE=3 S...	[more]
A0A6J1EAG0	3.2e-09	38.20	60S ribosomal protein L13a-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Chy2G037390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133995.1	1.21e-15	49.57	60S ribosomal protein L13a-2 [Cucumis sativus] >XP_008438365.1 PREDICTED: 60S ri...	[more]
XP_022924796.1	3.35e-15	48.70	60S ribosomal protein L13a-4-like isoform X1 [Cucurbita moschata] >XP_023529032....	[more]
XP_022147118.1	9.28e-15	47.83	60S ribosomal protein L13a-4-like [Momordica charantia]	[more]
TYK18889.1	1.35e-14	46.09	60S ribosomal protein L13a-4 [Cucumis melo var. makuwa]	[more]
MBS2599559.1	3.71e-14	46.09	50S ribosomal protein L13 [Salmonella enterica subsp. enterica serovar Typhimuri...	[more]

BLAST of Chy2G037390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24830.1	9.3e-09	34.83	Ribosomal protein L13 family protein	[more]
AT4G13170.1	3.5e-08	33.15	Ribosomal protein L13 family protein	[more]
AT3G07110.1	4.6e-08	33.52	Ribosomal protein L13 family protein	[more]
AT3G07110.2	6.1e-08	33.33	Ribosomal protein L13 family protein	[more]
AT5G48760.1	6.1e-08	32.58	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	GENE3D	6.10.250.3250		coord: 72..120 e-value: 3.5E-8 score: 35.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..62
None	No IPR available	PANTHER	PTHR11545:SF28	BNAC03G44740D PROTEIN	coord: 72..120
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 72..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G037390.1	Chy2G037390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome