Chy2G037110 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G037110
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH02: 11521952 .. 11522346 (-)
RNA-Seq Expression	Chy2G037110
Synteny	Chy2G037110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTTCAAATGGAGCTGTAAGCCATCTAAGAAGCAACATCACAATCAGTTAACTCAAATTCATGAATCACTAACAATTTAATCTCTAATTCATCTCCATATGCCTGTATAAATATTGGTTCTCTCACTCCTATCTCCGGCAGCAATTTGATATTACCTTCAAATCGAGTTTTCTGTGCAGACATCAATGGCAGGATTCAGCATCCACAGGGCGAAGTGGCTGTTTGTGGTGTCTCTGGTGCTCCTGCTTGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACGTTTCTGAATGGTGGAATTCTGCTATCAATGTTCATCTCCCTCGTTGTGCTTCTCTTGCATTAG

mRNA sequence

ATGTCATCTTCAAATGGAGCTACATCAATGGCAGGATTCAGCATCCACAGGGCGAAGTGGCTGTTTGTGGTGTCTCTGGTGCTCCTGCTTGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACGTTTCTGAATGGTGGAATTCTGCTATCAATGTTCATCTCCCTCGTTGTGCTTCTCTTGCATTAG

Coding sequence (CDS)

ATGTCATCTTCAAATGGAGCTACATCAATGGCAGGATTCAGCATCCACAGGGCGAAGTGGCTGTTTGTGGTGTCTCTGGTGCTCCTGCTTGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACGTTTCTGAATGGTGGAATTCTGCTATCAATGTTCATCTCCCTCGTTGTGCTTCTCTTGCATTAG

Protein sequence

MSSSNGATSMAGFSIHRAKWLFVVSLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFLNGGILLSMFISLVVLLLH*

Homology

[Close]

BLAST of Chy2G037110 vs. ExPASy TrEMBL
Match: A0A5D3D5P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00320 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MSSSNGATSMAGFSIHRAKWLFVVSLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFLNG 60
          MSSSNGAT MAGFSIHRA WLFVV+LVLLLAVARAQDGAGLAPLPAMDAGTGFQVTF NG
Sbjct: 5  MSSSNGATLMAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNG 64

Query: 61 GILLSMFISLVVLLLH 77
          GILLSMFI LV LL H
Sbjct: 65 GILLSMFIYLVALLWH 80

[Close]

BLAST of Chy2G037110 vs. ExPASy TrEMBL
Match: A0A0A0LXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-25
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 10 MAGFSIHRAKWLFVVSLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFLNGGILLSMFIS 69
          MAGFSIHRAKWLFVV+LVLLLAVARAQDGAGLAPLPAMDAGTGFQVTF NGGILLSMFIS
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 70 LVVLLLH 77
          LVVLLLH
Sbjct: 61 LVVLLLH 67

[Close]

BLAST of Chy2G037110 vs. NCBI nr
Match: KAA0059092.1 (hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK18840.1 hypothetical protein E5676_scaffold204G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 2.07e-36
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MSSSNGATSMAGFSIHRAKWLFVVSLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFLNG 60
          MSSSNGAT MAGFSIHRA WLFVV+LVLLLAVARAQDGAGLAPLPAMDAGTGFQVTF NG
Sbjct: 5  MSSSNGATLMAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNG 64

Query: 61 GILLSMFISLVVLLLH 76
          GILLSMFI LV LL H
Sbjct: 65 GILLSMFIYLVALLWH 80

[Close]

BLAST of Chy2G037110 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_007521 [Cucumis sativus])

HSP 1 Score: 122 bits (306), Expect = 1.39e-34
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 10 MAGFSIHRAKWLFVVSLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFLNGGILLSMFIS 69
          MAGFSIHRAKWLFVV+LVLLLAVARAQDGAGLAPLPAMDAGTGFQVTF NGGILLSMFIS
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 70 LVVLLLH 76
          LVVLLLH
Sbjct: 61 LVVLLLH 67

The following BLAST results are available for this feature:

BLAST of Chy2G037110 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G037110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5P4	2.4e-26	90.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LXI4	7.8e-25	97.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1	[more]

BLAST of Chy2G037110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059092.1	2.07e-36	90.79	hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK1884...	[more]
KGN66478.1	1.39e-34	97.01	hypothetical protein Csa_007521 [Cucumis sativus]	[more]

BLAST of Chy2G037110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659	PROTEIN, PUTATIVE-RELATED-RELATED	coord: 10..76
None	No IPR available	PANTHER	PTHR33659:SF10	SUBFAMILY NOT NAMED	coord: 10..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G037110.1	Chy2G037110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane