Chy2G035260 (gene) Cucumber (hystrix) v1

Overview


Name	Chy2G035260
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Rep-A_N domain-containing protein
Location	chrH02: 9198304 .. 9198840 (-)
RNA-Seq Expression	Chy2G035260
Synteny	Chy2G035260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGCTTCACCGGGTCAAAGTTCGCGACGCCGATGACGGCCCCCAATATCGCCACGACCACCACTCCACCTGCCGCAATACTCAGCAAGAAGTTCTTCAACGAGGGCGAGACTCCGGATTCGGCAGCCTCGGCAACCTCTGGAATGACCATCGAGGCGGTGAGAGCAGCAGCAGTGATTCCAGCAACAGCCTTCTCCTTGAAGGAAGATCGAAGGGCGAGGATCCTTCCGTTGGAGATGGGAGCAGAAGCGATGGGCTTGCGGGACTTAAAAGAGGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGCTTGCGGGTGTGGTGGGTGAATGGTAAGGCCATTGAAAGAGCGGAAGTGGAAGCCATTGATGGGATGAATTGGAAGGTTGGGGTAATGGAGGATTTTGTGGAAAATTGTTGGGAAGATGAGAATTGGGGATTAGGGGATTTTTGGGAAAGGGGTGTGGGCCAAGTGAAGAAGAAGCGGAGGGAGTTGGAGATTGTTGGTGAGGTTGAAATCTTGATCTTGGTCTGA

mRNA sequence

CTTCGCTTCACCGGGTCAAAGTTCGCGACGCCGATGACGGCCCCCAATATCGCCACGACCACCACTCCACCTGCCGCAATACTCAGCAAGAAGTTCTTCAACGAGGGCGAGACTCCGGATTCGGCAGCCTCGGCAACCTCTGGAATGACCATCGAGGCGGTGAGAGCAGCAGCAGTGATTCCAGCAACAGCCTTCTCCTTGAAGGAAGATCGAAGGGCGAGGATCCTTCCGTTGGAGATGGGAGCAGAAGCGATGGGCTTGCGGGACTTAAAAGAGGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGCTTGCGGGTGTGGTGGGTGAATGGTAAGGCCATTGAAAGAGCGGAAGTGGAAGCCATTGATGGGATGAATTGGAAGGTTGGGGTAATGGAGGATTTTGTGGAAAATTGTTGGGAAGATGAGAATTGGGGATTAGGGGATTTTTGGGAAAGGGGTGTGGGCCAAGTGAAGAAGAAGCGGAGGGAGTTGGAGATTGTTGGTGAGGTTGAAATCTTGATCTTGGTCTGA

Coding sequence (CDS)

CTTCGCTTCACCGGGTCAAAGTTCGCGACGCCGATGACGGCCCCCAATATCGCCACGACCACCACTCCACCTGCCGCAATACTCAGCAAGAAGTTCTTCAACGAGGGCGAGACTCCGGATTCGGCAGCCTCGGCAACCTCTGGAATGACCATCGAGGCGGTGAGAGCAGCAGCAGTGATTCCAGCAACAGCCTTCTCCTTGAAGGAAGATCGAAGGGCGAGGATCCTTCCGTTGGAGATGGGAGCAGAAGCGATGGGCTTGCGGGACTTAAAAGAGGGCAATGGGTTGAAGAAAGCGTCGTTGGAGAGTGGCTTGCGGGTGTGGTGGGTGAATGGTAAGGCCATTGAAAGAGCGGAAGTGGAAGCCATTGATGGGATGAATTGGAAGGTTGGGGTAATGGAGGATTTTGTGGAAAATTGTTGGGAAGATGAGAATTGGGGATTAGGGGATTTTTGGGAAAGGGGTGTGGGCCAAGTGAAGAAGAAGCGGAGGGAGTTGGAGATTGTTGGTGAGGTTGAAATCTTGATCTTGGTCTGA

Protein sequence

LRFTGSKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAFSLKEDRRARILPLEMGAEAMGLRDLKEGNGLKKASLESGLRVWWVNGKAIERAEVEAIDGMNWKVGVMEDFVENCWEDENWGLGDFWERGVGQVKKKRRELEIVGEVEILILV*

Homology

[Close]

BLAST of Chy2G035260 vs. ExPASy TrEMBL
Match: A0A5A7UIW0 (Replication protein A 70 kDa DNA-binding subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001760 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.5e-47
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 12  MTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAFSLKEDR 71
           MTAPNIATTT PPAAILSKKFFNEG+TPD AASATSG+TI+A RAAAVIPATAFS  +DR
Sbjct: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60

Query: 72  RARILPLEMGAEAMGLRDLKEGNGLKKASLESGLRVWWVNGKAIERAEVEAIDGMNW-KV 131
            A ILPLEMGA AMGLRDLKEGNGLKKASLESGL V WVNGKAIE AEVEAIDGM W +V
Sbjct: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV 120

Query: 132 GVMEDFVEN 140
             +EDFVEN
Sbjct: 121 KGIEDFVEN 129

[Close]

BLAST of Chy2G035260 vs. ExPASy TrEMBL
Match: A0A218WXK4 (Rep-A_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 73/129 (56.59%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 1   LRFTGSKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVI 60
           +R TGSK ATP+TAP I  +TTPPA IL +KF  EG+TPD AASATSG+TIEAVRAAAV 
Sbjct: 162 VRLTGSKLATPITAPTITPSTTPPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVS 221

Query: 61  PATAFSLKEDRRARILPLEMGAEAMGL-RDLKEGNGLKKAS-----LESGLRVWWVNGKA 120
           P  AFSL+E   +   P +  A   GL  D   G+GLKK S      E  +    VNG A
Sbjct: 222 PVMAFSLREALTSN-FPPDFDAPTKGLFFDSLAGSGLKKHSAGFLCAEEAV----VNGIA 281

Query: 121 IERAEVEAI 124
           IE AEVEAI
Sbjct: 282 IETAEVEAI 285

[Close]

BLAST of Chy2G035260 vs. ExPASy TrEMBL
Match: A0A498KLC5 (Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_018175 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19
Identity = 71/120 (59.17%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 6   SKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAF 65
           SK ATP TAP I TTTTPPAA+LSKKF  EGETP+ AASATSG+TIEAV AAAVIP TAF
Sbjct: 186 SKLATPTTAPTITTTTTPPAAMLSKKFLREGETPE-AASATSGITIEAVSAAAVIPVTAF 245

Query: 66  SLKEDRRARILPLEMGAEAMGLRDLKEGNGLKKASLESGLRVW--WVNGKAIERAEVEAI 124
           S KE      LPL+  A      +   G GL K S E  +  W   VNG AI  A V AI
Sbjct: 246 SFKE-ALTWSLPLDFDAAGANAFEGLSGIGLNKLSAEDWILFWVALVNGMAIVTAAVAAI 303

[Close]

BLAST of Chy2G035260 vs. ExPASy TrEMBL
Match: A0A498HYV1 (Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029498 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.7e-19
Identity = 73/122 (59.84%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 6   SKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAF 65
           SK  TP TAP I T TTPPAAILSKKFF EGETP+ AASATSG+TIEAV AAAVIP TAF
Sbjct: 133 SKLDTPTTAPMITTATTPPAAILSKKFFREGETPE-AASATSGITIEAVSAAAVIPVTAF 192

Query: 66  SLKEDRRARILPLEM-GAEAMGLRDLK-EGNGLKKASLESGLRVW--WVNGKAIERAEVE 124
           S  E    R LPL+   A A     L   G+GLKK   E  +  W   VNG AI  A V+
Sbjct: 193 SFNE-ALTRSLPLDFDAAGASAFEGLSGSGSGLKKHPAEDWILFWVALVNGMAIVTAVVD 252

[Close]

BLAST of Chy2G035260 vs. ExPASy TrEMBL
Match: A0A7J7DQ36 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00395 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-16
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 2   RFTGSKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIP 61
           R TGSKFATP TAP +AT+TTPPAA+LSKK   +GETP++AASATSG+T+EAV+AAAV P
Sbjct: 43  RLTGSKFATPTTAPKMATSTTPPAAMLSKKLLRDGETPEAAASATSGITMEAVKAAAVSP 102

Query: 62  ATAFSLKE 70
             AFS KE
Sbjct: 103 VKAFSFKE 110

[Close]

BLAST of Chy2G035260 vs. NCBI nr
Match: KAA0055792.1 (Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa] >TYK10043.1 Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 2.80e-61
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 12  MTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAFSLKEDR 71
           MTAPNIATTT PPAAILSKKFFNEG+TPD AASATSG+TI+A RAAAVIPATAFS  +DR
Sbjct: 1   MTAPNIATTTAPPAAILSKKFFNEGDTPDPAASATSGITIDAARAAAVIPATAFSFNDDR 60

Query: 72  RARILPLEMGAEAMGLRDLKEGNGLKKASLESGLRVWWVNGKAIERAEVEAIDGMNW-KV 131
            A ILPLEMGA AMGLRDLKEGNGLKKASLESGL V WVNGKAIE AEVEAIDGM W +V
Sbjct: 61  TATILPLEMGAAAMGLRDLKEGNGLKKASLESGLWVAWVNGKAIETAEVEAIDGMKWMEV 120

Query: 132 GVMEDFVEN 139
             +EDFVEN
Sbjct: 121 KGIEDFVEN 129

[Close]

BLAST of Chy2G035260 vs. NCBI nr
Match: KAG6590026.1 (hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (322), Expect = 4.34e-34
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 17  IATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAFSLKEDRRARIL 76
           +ATTT PPAA+LSKKFF++GETP  AASATSG+TI+AVRAAAV P  AFS K+DR A  L
Sbjct: 1   MATTTVPPAAMLSKKFFSDGETPGPAASATSGITIDAVRAAAVSPVMAFSFKDDRTATSL 60

Query: 77  PLEMGAEAMGLRDLKE---GNGLKKASLESGLRVWWVNGKAIERAEVEAID 124
           PL++GA AM LRDL+E   GNGLKKA L+S L V  VNG+A E  EVEAID
Sbjct: 61  PLDVGAAAMALRDLEEEEAGNGLKKAWLDSLLWVALVNGRASETVEVEAID 111

[Close]

BLAST of Chy2G035260 vs. NCBI nr
Match: OWM77286.1 (hypothetical protein CDL15_Pgr028923 [Punica granatum])

HSP 1 Score: 105 bits (262), Expect = 1.06e-23
Identity = 73/129 (56.59%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 1   LRFTGSKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVI 60
           +R TGSK ATP+TAP I  +TTPPA IL +KF  EG+TPD AASATSG+TIEAVRAAAV 
Sbjct: 162 VRLTGSKLATPITAPTITPSTTPPATILRRKFLREGDTPDPAASATSGITIEAVRAAAVS 221

Query: 61  PATAFSLKEDRRARILPLEMGAEAMGLR-DLKEGNGLKKASL-----ESGLRVWWVNGKA 120
           P  AFSL+E   +   P +  A   GL  D   G+GLKK S      E  +    VNG A
Sbjct: 222 PVMAFSLREALTSNFPP-DFDAPTKGLFFDSLAGSGLKKHSAGFLCAEEAV----VNGIA 281

Query: 121 IERAEVEAI 123
           IE AEVEAI
Sbjct: 282 IETAEVEAI 285

[Close]

BLAST of Chy2G035260 vs. NCBI nr
Match: DAD44309.1 (TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera])

HSP 1 Score: 102 bits (254), Expect = 3.28e-23
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 12  MTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAFSLKEDR 71
           MTAP I  +TTPPA +LSKKF  EGE P  AASATSG+T+EAVRAAAV P TAFSL +DR
Sbjct: 1   MTAPTITPSTTPPATMLSKKFLREGEIPGPAASATSGITMEAVRAAAVNPVTAFSLSDDR 60

Query: 72  RARILPLEMGAEAMGLRDLKEGNGLKKASLESGLRVWW--VNGKAIERAEVEAI 123
                       ++ L DLK G GLKKAS   G  +W   VNG AIE AEV+AI
Sbjct: 61  TWSFALALDEVASIALEDLK-GKGLKKASELGGSLLWLAEVNGVAIETAEVDAI 113

[Close]

BLAST of Chy2G035260 vs. NCBI nr
Match: RXI06133.1 (hypothetical protein DVH24_018175 [Malus domestica])

HSP 1 Score: 103 bits (257), Expect = 5.50e-23
Identity = 71/120 (59.17%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 6   SKFATPMTAPNIATTTTPPAAILSKKFFNEGETPDSAASATSGMTIEAVRAAAVIPATAF 65
           SK ATP TAP I TTTTPPAA+LSKKF  EGETP+ AASATSG+TIEAV AAAVIP TAF
Sbjct: 186 SKLATPTTAPTITTTTTPPAAMLSKKFLREGETPE-AASATSGITIEAVSAAAVIPVTAF 245

Query: 66  SLKEDRRARILPLEMGAEAMGLRDLKEGNGLKKASLESGLRVW--WVNGKAIERAEVEAI 123
           S KE      LPL+  A      +   G GL K S E  +  W   VNG AI  A V AI
Sbjct: 246 SFKE-ALTWSLPLDFDAAGANAFEGLSGIGLNKLSAEDWILFWVALVNGMAIVTAAVAAI 303

The following BLAST results are available for this feature:

BLAST of Chy2G035260 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G035260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIW0	1.5e-47	83.72	Replication protein A 70 kDa DNA-binding subunit OS=Cucumis melo var. makuwa OX=...	[more]
A0A218WXK4	6.1e-20	56.59	Rep-A_N domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr028923...	[more]
A0A498KLC5	2.3e-19	59.17	Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_018175 PE=...	[more]
A0A498HYV1	8.7e-19	59.84	Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_029498 PE=...	[more]
A0A7J7DQ36	6.9e-16	72.06	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00395 ...	[more]

BLAST of Chy2G035260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055792.1	2.80e-61	83.72	Replication protein A 70 kDa DNA-binding subunit [Cucumis melo var. makuwa] >TYK...	[more]
KAG6590026.1	4.34e-34	68.47	hypothetical protein SDJN03_15449, partial [Cucurbita argyrosperma subsp. sorori...	[more]
OWM77286.1	1.06e-23	56.59	hypothetical protein CDL15_Pgr028923 [Punica granatum]	[more]
DAD44309.1	3.28e-23	58.77	TPA_asm: hypothetical protein HUJ06_002539 [Nelumbo nucifera]	[more]
RXI06133.1	5.50e-23	59.17	hypothetical protein DVH24_018175 [Malus domestica]	[more]

BLAST of Chy2G035260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy2G035260.1	Chy2G035260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003677	DNA binding