Chy1G022340 (gene) Cucumber (hystrix) v1

Overview
NameChy1G022340
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description(thale cress) hypothetical protein
LocationchrH01: 26750318 .. 26750657 (+)
RNA-Seq ExpressionChy1G022340
SyntenyChy1G022340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTCCAACCGCCAGTGCCACTCGTGTTCTTCTACAGCAAAGTAAGGATTTGGATTTCTTAAAGACTTTTTTTTTTGTTTTTTAAAATTAAATATAGACAGTTTGTACGTTTGAATTTGATTAACAAACAACAGTAGCTATTTTCTTTAATGGAAAAAACTTGGTTTTTAATATTTAAAGCTAATTATGAGTTGGGGTGGTGTGTGTATGTGTGTGCAGTTAATAGGCCGCCAATATGCCCGGCGTGCGTGTGCTGCGAACCGGCACCGGCGGGATCCTGTTGCCGCTGTTGTGCTTCTCCGATTCAGACGTCATCTCAGAACGGGTCGCCATGA

mRNA sequence

ATGACAACTCCAACCGCCAGTGCCACTCGTGTTCTTCTACAGCAAATTAATAGGCCGCCAATATGCCCGGCGTGCGTGTGCTGCGAACCGGCACCGGCGGGATCCTGTTGCCGCTGTTGTGCTTCTCCGATTCAGACGTCATCTCAGAACGGGTCGCCATGA

Coding sequence (CDS)

ATGACAACTCCAACCGCCAGTGCCACTCGTGTTCTTCTACAGCAAATTAATAGGCCGCCAATATGCCCGGCGTGCGTGTGCTGCGAACCGGCACCGGCGGGATCCTGTTGCCGCTGTTGTGCTTCTCCGATTCAGACGTCATCTCAGAACGGGTCGCCATGA

Protein sequence

MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP*
Homology
BLAST of Chy1G022340 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 54
          MTTPTASATRVLLQQINRPPICPACVCCEP PAGSCCRCCASPIQTSSQNGSP
Sbjct: 25 MTTPTASATRVLLQQINRPPICPACVCCEPPPAGSCCRCCASPIQTSSQNGSP 77

BLAST of Chy1G022340 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 54
          MT PTA+ATRVLLQQ+NRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP
Sbjct: 25 MTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 77

BLAST of Chy1G022340 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 54
          MT  TA+ATR LLQQ+NRPPICPACVCCEPAPAGSCCRCCA+PIQTSSQNGSP
Sbjct: 26 MTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCRCCATPIQTSSQNGSP 78

BLAST of Chy1G022340 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 2  TTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 54
          T  T +ATRVLLQQ+NRPPICPACVCCEPAPAGSCCRCCA+PIQTSSQ+GSP
Sbjct: 27 TISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCRCCATPIQTSSQSGSP 78

BLAST of Chy1G022340 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 0

Query: 5  TASATRVLLQQINRPPICPACVCCEPAPAGSCCR-CCASPIQTSSQNGSP 54
          TA+ATR+ L Q+ RPPICPACVCC+P P GSCC+ CCA+PI+TSSQNGSP
Sbjct: 32 TAAATRLPL-QVRRPPICPACVCCKPPPPGSCCKQCCATPIETSSQNGSP 80

BLAST of Chy1G022340 vs. NCBI nr
Match: KGN45568.1 (hypothetical protein Csa_016454 [Cucumis sativus])

HSP 1 Score: 108 bits (270), Expect = 2.16e-29
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 53
          MTTPTASATRVLLQQINRPPICPACVCCEP PAGSCCRCCASPIQTSSQNGSP
Sbjct: 25 MTTPTASATRVLLQQINRPPICPACVCCEPPPAGSCCRCCASPIQTSSQNGSP 77

BLAST of Chy1G022340 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida])

HSP 1 Score: 107 bits (266), Expect = 8.81e-29
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 53
          MT PTA+ATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP
Sbjct: 25 MTIPTANATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 77

BLAST of Chy1G022340 vs. NCBI nr
Match: KAA0059464.1 (hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK03859.1 hypothetical protein E5676_scaffold347G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 1.78e-28
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 53
          MT PTA+ATRVLLQQ+NRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP
Sbjct: 25 MTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 77

BLAST of Chy1G022340 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima])

HSP 1 Score: 100 bits (250), Expect = 2.50e-26
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 1  MTTPTASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 53
          MT  TA+ATR LLQQ+NRPPICPACVCCEPAPAGSCCRCCA+PIQTSSQNGSP
Sbjct: 26 MTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCRCCATPIQTSSQNGSP 78

BLAST of Chy1G022340 vs. NCBI nr
Match: KAG6575497.1 (hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 2.06e-25
Identity = 45/49 (91.84%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 5  TASATRVLLQQINRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGSP 53
          TA+ATRVLLQQ+NRPPICPACVCCEPAPAGSCCRCCA+PIQTSSQ+GSP
Sbjct: 30 TANATRVLLQQVNRPPICPACVCCEPAPAGSCCRCCATPIQTSSQSGSP 78

BLAST of Chy1G022340 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 6  ASATRVLLQQI-NRPPICPACVCCEPAPAGSCCRCCASPIQTSSQNGS 53
          ++ATR+    I +R PICPACVCCEPAP GSCCRCCASPI T + + S
Sbjct: 28 SNATRIPRAPISSRRPICPACVCCEPAPLGSCCRCCASPIVTQTHHHS 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7Y93.7e-2198.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1[more]
A0A5A7UWJ71.8e-2094.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1JPW77.7e-1988.68uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758... [more]
A0A6J1GR881.1e-1786.54uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC1114563... [more]
A0A6J1CSH34.5e-1174.00uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
KGN45568.12.16e-2998.11hypothetical protein Csa_016454 [Cucumis sativus][more]
XP_038896231.18.81e-2996.23uncharacterized protein LOC120084509 [Benincasa hispida][more]
KAA0059464.11.78e-2894.34hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK038... [more]
XP_022992462.12.50e-2688.68uncharacterized protein LOC111488758 [Cucurbita maxima][more]
KAG6575497.12.06e-2591.84hypothetical protein SDJN03_26136, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT1G51920.17.6e-1164.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36328:SF1TRANSMEMBRANE PROTEINcoord: 5..53
NoneNo IPR availablePANTHERPTHR36328TRANSMEMBRANE PROTEINcoord: 5..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G022340.1Chy1G022340.1mRNA