Chy1G020540 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G020540
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	nuclear pore complex protein NUP50A-like
Location	chrH01: 25377600 .. 25379000 (-)
RNA-Seq Expression	Chy1G020540
Synteny	Chy1G020540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGCTGAAAATGCAACATCTACTAAGAAGAGGGCTGCTGGAAGGGAGCTATCACGAGATAACCCCGGGCTTGACGATGATGAAGATGTTTCTGAGCAAGAGACTGGAACTTTTAAGCGGGCTAGTGAAGAGGTGCTAGCCACAAGAAGAATTGTCAAAGTACGTCGTGGTTCAACTACTTCTGCCCCATCTTCAAATCCTTTTGCTGGAATTCGCTTGGTACCTCCAATTGAAAATAGTGGAAGTGTTGCAGAAGTTAGATGCGATACAGAGGCAGCTGGTGAGAAAGCAGGTTCAGATGAGGCAAATGGAAAAGACATTCCCCATGAAATGACTCAAATAGATGGGGATCATAGTGATGAGCCAGTACAATCTAAAATTGACACATCAGAGGCCAAGTCTGTTCCAAAGGTGCAGCCTGTCGATCAGAATAGCACTGTTTCAAGCGAATCTGCCATATCTAAGGTAGATGATAACCTAGTTTCTGAAAGCAATAAGATTGAAAATGAAGAACCAGTGGGAGGAGACAAGACCGGCAATGAGGAGCTTGTTAGAGACGCTGAGAAGGAATCTGAGAATGATGAATGTGCAAGTGGTAATAAGAATGAAGACGTGGATCCTGCAAGAGGTGATAAGAACGAAAATGAAGAACCCAGTGAAGGAAATGAGATACAAAACAAGGAAACTGGGGAACTAGAAAAAACAGAAAATGAAGAAAACAAAGAAGACAAAAGTGAAGGAGAGACTAGTAAGGAGGCTGCTCCTTTGAACTCATTCCAACAATTATCGAGCAGCCAGAATGCCTTCACTGGTCTTGCGGGTACTGGATTTTCGACATCTACATTCTCCTTTGGTAACATACCCAAGGATGGGGTTGGCCTAACTACTAGTTTTGGTCTCTCTAATAATGGGAGCTCCGCCCTCTTTGGTACTTCAGGGTCTTCCATTGTTTCCAAGAGTGAGAAAAGTGGCTTTCCATCAATGCAAGAGGTCGCAGTTGAAACTGGTGAAGAAAATGAAAAGGTGGTTTTCAATGCTGATTCTATATTGTTTGAGTTCATCGATGGATCGTGGAAAGAACGTGGAAAGGGGGAGCTGAAAGTCAATGTCCCTACGAGTGGGATCGGCAGAGGAAGGATTCTTATGAGAGCTAGGGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAGAGGTATCACCTTTGCCTGCATGAATAGCACCAGCGACGGGAAGGATGGTCTCTCAACATTTGGTGTGAAGTTCAAGGATGTATCCATAGTCGAGGAGTTTCGAGCAGCAGTCACCGAGCATAAAGATAAAGCTTCTTCTACAGTTCTGAAAACGCCTGAGAATTCTCCTTAA

mRNA sequence

ATGGGGGATGCTGAAAATGCAACATCTACTAAGAAGAGGGCTGCTGGAAGGGAGCTATCACGAGATAACCCCGGGCTTGACGATGATGAAGATGTTTCTGAGCAAGAGACTGGAACTTTTAAGCGGGCTAGTGAAGAGGTGCTAGCCACAAGAAGAATTGTCAAAGTACGTCGTGGTTCAACTACTTCTGCCCCATCTTCAAATCCTTTTGCTGGAATTCGCTTGGTACCTCCAATTGAAAATAGTGGAAGTGTTGCAGAAGTTAGATGCGATACAGAGGCAGCTGGTGAGAAAGCAGGTTCAGATGAGGCAAATGGAAAAGACATTCCCCATGAAATGACTCAAATAGATGGGGATCATAGTGATGAGCCAGTACAATCTAAAATTGACACATCAGAGGCCAAGTCTGTTCCAAAGGTGCAGCCTGTCGATCAGAATAGCACTGTTTCAAGCGAATCTGCCATATCTAAGGTAGATGATAACCTAGTTTCTGAAAGCAATAAGATTGAAAATGAAGAACCAGTGGGAGGAGACAAGACCGGCAATGAGGAGCTTGTTAGAGACGCTGAGAAGGAATCTGAGAATGATGAATGTGCAAGTGGTAATAAGAATGAAGACGTGGATCCTGCAAGAGGTGATAAGAACGAAAATGAAGAACCCAGTGAAGGAAATGAGATACAAAACAAGGAAACTGGGGAACTAGAAAAAACAGAAAATGAAGAAAACAAAGAAGACAAAAGTGAAGGAGAGACTAGTAAGGAGGCTGCTCCTTTGAACTCATTCCAACAATTATCGAGCAGCCAGAATGCCTTCACTGGTCTTGCGGGTACTGGATTTTCGACATCTACATTCTCCTTTGGTAACATACCCAAGGATGGGGTTGGCCTAACTACTAGTTTTGGTCTCTCTAATAATGGGAGCTCCGCCCTCTTTGGTACTTCAGGGTCTTCCATTGTTTCCAAGAGTGAGAAAAGTGGCTTTCCATCAATGCAAGAGGTCGCAGTTGAAACTGGTGAAGAAAATGAAAAGGTGGTTTTCAATGCTGATTCTATATTGTTTGAGTTCATCGATGGATCGTGGAAAGAACGTGGAAAGGGGGAGCTGAAAGTCAATGTCCCTACGAGTGGGATCGGCAGAGGAAGGATTCTTATGAGAGCTAGGGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAGAGGTATCACCTTTGCCTGCATGAATAGCACCAGCGACGGGAAGGATGGTCTCTCAACATTTGGTGTGAAGTTCAAGGATGTATCCATAGTCGAGGAGTTTCGAGCAGCAGTCACCGAGCATAAAGATAAAGCTTCTTCTACAGTTCTGAAAACGCCTGAGAATTCTCCTTAA

Coding sequence (CDS)

ATGGGGGATGCTGAAAATGCAACATCTACTAAGAAGAGGGCTGCTGGAAGGGAGCTATCACGAGATAACCCCGGGCTTGACGATGATGAAGATGTTTCTGAGCAAGAGACTGGAACTTTTAAGCGGGCTAGTGAAGAGGTGCTAGCCACAAGAAGAATTGTCAAAGTACGTCGTGGTTCAACTACTTCTGCCCCATCTTCAAATCCTTTTGCTGGAATTCGCTTGGTACCTCCAATTGAAAATAGTGGAAGTGTTGCAGAAGTTAGATGCGATACAGAGGCAGCTGGTGAGAAAGCAGGTTCAGATGAGGCAAATGGAAAAGACATTCCCCATGAAATGACTCAAATAGATGGGGATCATAGTGATGAGCCAGTACAATCTAAAATTGACACATCAGAGGCCAAGTCTGTTCCAAAGGTGCAGCCTGTCGATCAGAATAGCACTGTTTCAAGCGAATCTGCCATATCTAAGGTAGATGATAACCTAGTTTCTGAAAGCAATAAGATTGAAAATGAAGAACCAGTGGGAGGAGACAAGACCGGCAATGAGGAGCTTGTTAGAGACGCTGAGAAGGAATCTGAGAATGATGAATGTGCAAGTGGTAATAAGAATGAAGACGTGGATCCTGCAAGAGGTGATAAGAACGAAAATGAAGAACCCAGTGAAGGAAATGAGATACAAAACAAGGAAACTGGGGAACTAGAAAAAACAGAAAATGAAGAAAACAAAGAAGACAAAAGTGAAGGAGAGACTAGTAAGGAGGCTGCTCCTTTGAACTCATTCCAACAATTATCGAGCAGCCAGAATGCCTTCACTGGTCTTGCGGGTACTGGATTTTCGACATCTACATTCTCCTTTGGTAACATACCCAAGGATGGGGTTGGCCTAACTACTAGTTTTGGTCTCTCTAATAATGGGAGCTCCGCCCTCTTTGGTACTTCAGGGTCTTCCATTGTTTCCAAGAGTGAGAAAAGTGGCTTTCCATCAATGCAAGAGGTCGCAGTTGAAACTGGTGAAGAAAATGAAAAGGTGGTTTTCAATGCTGATTCTATATTGTTTGAGTTCATCGATGGATCGTGGAAAGAACGTGGAAAGGGGGAGCTGAAAGTCAATGTCCCTACGAGTGGGATCGGCAGAGGAAGGATTCTTATGAGAGCTAGGGGAAATTACAGGTTAATTTTGAATGCAAGTCTTTACCCTGACATGAAGCTCACAAACATGGACAAGAGAGGTATCACCTTTGCCTGCATGAATAGCACCAGCGACGGGAAGGATGGTCTCTCAACATTTGGTGTGAAGTTCAAGGATGTATCCATAGTCGAGGAGTTTCGAGCAGCAGTCACCGAGCATAAAGATAAAGCTTCTTCTACAGTTCTGAAAACGCCTGAGAATTCTCCTTAA

Protein sequence

MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGSTTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDHSDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKTGNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENEENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSFGLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNSTSDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP*

Homology

[Close]

BLAST of Chy1G020540 vs. ExPASy Swiss-Prot
Match: Q9C829 (Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 5.0e-87
Identity = 226/491 (46.03%), Postives = 297/491 (60.49%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDDD+D +E E+GTFK+AS+EVLA+RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  STTSAP--SSNPFAGIRLVP-------PIENSGSVAEVRCDTEAAGEKAGSDEANGKDIP 120
             ++AP  +SNPFAGI+LVP       P+  +  +AE +    A  E    D     DI 
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTTAPASTPVGTNAPLAESKL---APAEAVVEDNQKASDI- 120

Query: 121 HEMTQIDGDHSDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVD----DNLVSES 180
                   +  DE    K+D  +A      +  D++     +SA  +V       +VS  
Sbjct: 121 --------EEGDEVDSKKVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVSCD 180

Query: 181 NKIENEEPVGGDKTGNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEI 240
             + N    G D+T         EK+S                  GD+ E +E  EGN I
Sbjct: 181 TNVCNNAVEGTDQTD-----FPLEKDS-----------------GGDQAEKKE-KEGNGI 240

Query: 241 QNKETGELEKTENEENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSF 300
           +                    E + + +    +SFQQ SS++NAFTGLA T  S S+FSF
Sbjct: 241 E--------------------EADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSF 300

Query: 301 GNIPKD---GVGLTTSFGLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEK 360
           G + +D   G G    FGL ++ SS++FG +GSSI+ KSE SGFP  QEV+ ETGEENEK
Sbjct: 301 GLVSQDGSTGTGSLFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEK 360

Query: 361 VVFNADSILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMK 420
           V F+ADSI+FE++DG WKERGKGELKVNV +S  G+ R++MRA+GNYRLILNASLYP+MK
Sbjct: 361 VAFSADSIMFEYLDGGWKERGKGELKVNV-SSNDGKARLVMRAKGNYRLILNASLYPEMK 420

Query: 421 LTNMDKRGITFACMNSTSDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKD--------KAS 467
           L NMDK+GITFAC+NS S+GK+GLSTF +KFKD +IVEEFR A+ +HKD        + S
Sbjct: 421 LANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKS 435

[Close]

BLAST of Chy1G020540 vs. ExPASy Swiss-Prot
Match: Q9LW88 (Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE=1 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 7.4e-83
Identity = 224/485 (46.19%), Postives = 295/485 (60.82%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGL-DDDEDVSEQETGTFKRASEEVLATRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGL DDDED S  E+GTF  AS+EVLA+RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  --GSTTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQI 120
              S T+ P+SNPF GIRLVP    + S A        +   AG  E           + 
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLS---AGKQETLADGRSDATKET 120

Query: 121 DGDHSDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVG 180
           DGD       SK  +    +V K +      +  ++  I   +  +    N +E     G
Sbjct: 121 DGD-------SKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEG----G 180

Query: 181 GDKTGNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEK 240
           G    NE    D  K +   E A+G +         D N N    EG++   K+TG   +
Sbjct: 181 GAVNKNE----DEIKTTMVTEVAAGEETVK------DDNNNSNTVEGSDCVVKDTGG-NQ 240

Query: 241 TENEENKEDKSEG-ETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDG-- 300
           TE E  + D +E  E + ++  L+SF Q SSS+NAFTGLA TGFS S+FSFG +P++G  
Sbjct: 241 TEKEGKEGDGNEDTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGST 300

Query: 301 ----VGLTTSFGLSNNGSSALFGTS-GSSIVSKSEK--SGFPSMQEVAVETGEENEKVVF 360
                  + SFG +NNG+S+LFG S  +SI +KS +  + FPS Q+V+VETGEENEK  F
Sbjct: 301 GSGSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAF 360

Query: 361 NADSILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTN 420
            ADS++FE+++G WKERGKGELKVN+ T+   + R++MR++GNYRL LNASLYP+MKL  
Sbjct: 361 TADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAK 420

Query: 421 MDKRGITFACMNSTSDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTV-----LKT 467
           MDK+GITFAC+NS SD KDGLST  +KFKD ++VEEFRA + EHKD   S       LKT
Sbjct: 421 MDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKT 460

[Close]

BLAST of Chy1G020540 vs. ExPASy Swiss-Prot
Match: A0A0B4K7J2 (E3 SUMO-protein ligase RanBP2 OS=Drosophila melanogaster OX=7227 GN=Nup358 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-12
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 328  PSMQEVAVETGEENEKVVFNADSILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRAR 387
            P   EV V TGEE E + F + + LF ++D  WKERG G +K+ +     G  R+LMR  
Sbjct: 1315 PLPDEVEVRTGEEGEDIKFTSRAKLFRYVDKEWKERGTGVIKI-LCDKATGVSRVLMRRD 1374

Query: 388  GNYRLILNASLYPDMKLT----NMDKRGITFACMNSTSDGKDGLSTFGVKFKDVSIVEEF 447
              +++  N ++  D+ +     + DK+ + +A  N  +D +  L  F V+FK   + EEF
Sbjct: 1375 QTHKVCANHTITADITINVANQDKDKKSLLWAA-NDFADEQVTLERFLVRFKTGELAEEF 1434

Query: 448  RAAVTEHKDKASS 457
            R A T+  + A S
Sbjct: 1435 RVAFTKASEAAKS 1445

[Close]

BLAST of Chy1G020540 vs. ExPASy TrEMBL
Match: A0A0A0KAD0 (RanBD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446650 PE=4 SV=1)

HSP 1 Score: 831.2 bits (2146), Expect = 2.1e-237
Identity = 452/466 (97.00%), Postives = 456/466 (97.85%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEVR DTEAAGEKAGSDEANGKDIPHEMTQ DGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVRRDTEAAGEKAGSDEANGKDIPHEMTQKDGDH 120

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SD+PVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT
Sbjct: 121 SDDPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDECASGNKNED DP RGDKNE+EEPSEGNEIQNKETGELEKTE+E
Sbjct: 181 GNEELVRDAEKESENDECASGNKNEDADPERGDKNESEEPSEGNEIQNKETGELEKTESE 240

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP 467
           +DGK GLST GVKFKDVSIVEEFRAAVTEHK KASSTVLKTPENSP
Sbjct: 421 NDGKVGLSTLGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of Chy1G020540 vs. ExPASy TrEMBL
Match: A0A1S4E3Q0 (nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500566 PE=4 SV=1)

HSP 1 Score: 806.2 bits (2081), Expect = 7.1e-230
Identity = 441/466 (94.64%), Postives = 446/466 (95.71%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP 467
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK KASSTVLKTPENSP
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of Chy1G020540 vs. ExPASy TrEMBL
Match: A0A5D3BX12 (Nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002470 PE=4 SV=1)

HSP 1 Score: 806.2 bits (2081), Expect = 7.1e-230
Identity = 441/466 (94.64%), Postives = 446/466 (95.71%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 29  MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 88

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 89  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 148

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 149 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 208

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 209 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 268

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 269 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 328

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 329 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 388

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 389 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 448

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP 467
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK KASSTVLKTPENSP
Sbjct: 449 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 494

[Close]

BLAST of Chy1G020540 vs. ExPASy TrEMBL
Match: A0A1S3CHQ9 (nuclear pore complex protein NUP50A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500566 PE=4 SV=1)

HSP 1 Score: 781.2 bits (2016), Expect = 2.5e-222
Identity = 429/457 (93.87%), Postives = 434/457 (94.97%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASST 458
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK   S T
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKVGVSIT 457

[Close]

BLAST of Chy1G020540 vs. ExPASy TrEMBL
Match: A0A5A7UW04 (Nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G00030 PE=4 SV=1)

HSP 1 Score: 780.8 bits (2015), Expect = 3.2e-222
Identity = 427/451 (94.68%), Postives = 432/451 (95.79%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 29  MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 88

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 89  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 148

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 149 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 208

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 209 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 268

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 269 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 328

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 329 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 388

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 389 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 448

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHK 452
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK
Sbjct: 449 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHK 479

[Close]

BLAST of Chy1G020540 vs. NCBI nr
Match: XP_011659558.1 (nuclear pore complex protein NUP50A [Cucumis sativus] >KGN45347.1 hypothetical protein Csa_016470 [Cucumis sativus])

HSP 1 Score: 835 bits (2156), Expect = 1.40e-303
Identity = 452/466 (97.00%), Postives = 456/466 (97.85%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEVR DTEAAGEKAGSDEANGKDIPHEMTQ DGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVRRDTEAAGEKAGSDEANGKDIPHEMTQKDGDH 120

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SD+PVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT
Sbjct: 121 SDDPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDECASGNKNED DP RGDKNE+EEPSEGNEIQNKETGELEKTE+E
Sbjct: 181 GNEELVRDAEKESENDECASGNKNEDADPERGDKNESEEPSEGNEIQNKETGELEKTESE 240

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP 466
           +DGK GLST GVKFKDVSIVEEFRAAVTEHK KASSTVLKTPENSP
Sbjct: 421 NDGKVGLSTLGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of Chy1G020540 vs. NCBI nr
Match: XP_008462135.1 (PREDICTED: nuclear pore complex protein NUP50A isoform X1 [Cucumis melo] >XP_008462136.1 PREDICTED: nuclear pore complex protein NUP50A isoform X1 [Cucumis melo] >XP_016902854.1 PREDICTED: nuclear pore complex protein NUP50A isoform X1 [Cucumis melo])

HSP 1 Score: 810 bits (2091), Expect = 1.12e-293
Identity = 441/466 (94.64%), Postives = 446/466 (95.71%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP 466
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK KASSTVLKTPENSP
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 466

[Close]

BLAST of Chy1G020540 vs. NCBI nr
Match: TYK04047.1 (nuclear pore complex protein NUP50A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 810 bits (2091), Expect = 3.20e-293
Identity = 441/466 (94.64%), Postives = 446/466 (95.71%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 29  MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 88

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 89  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 148

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 149 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 208

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 209 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 268

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 269 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 328

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 329 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 388

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 389 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 448

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTVLKTPENSP 466
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK KASSTVLKTPENSP
Sbjct: 449 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKGKASSTVLKTPENSP 494

[Close]

BLAST of Chy1G020540 vs. NCBI nr
Match: XP_008462138.1 (PREDICTED: nuclear pore complex protein NUP50A isoform X2 [Cucumis melo])

HSP 1 Score: 784 bits (2024), Expect = 1.60e-283
Identity = 429/457 (93.87%), Postives = 434/457 (94.97%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 1   MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 61  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 120

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 121 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 180

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 181 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 240

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 241 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 301 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 361 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASST 457
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK   S T
Sbjct: 421 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKVGVSIT 457

[Close]

BLAST of Chy1G020540 vs. NCBI nr
Match: KAA0059280.1 (nuclear pore complex protein NUP50A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 783 bits (2022), Expect = 6.10e-283
Identity = 427/451 (94.68%), Postives = 432/451 (95.79%), Query Frame = 0


Query: 1   MGDAENATSTKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 60
           MGDAENATSTKKRAAGRELSRDNPG DDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS
Sbjct: 29  MGDAENATSTKKRAAGRELSRDNPGPDDDEDVSEQETGTFKRASEEVLATRRIVKVRRGS 88

Query: 61  TTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQIDGDH 120
           T SAPSSNPFAGIRLVPP ENSGSVAEV+ DTEAA EKAGSDEANGKDIPHE+TQ DGDH
Sbjct: 89  TASAPSSNPFAGIRLVPPTENSGSVAEVQHDTEAADEKAGSDEANGKDIPHEVTQKDGDH 148

Query: 121 SDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVGGDKT 180
           SDEPV+ KIDTSEAKSVPKVQPVDQNSTV SESAISKVDDNLV ESNKIENEEP GGDKT
Sbjct: 149 SDEPVKCKIDTSEAKSVPKVQPVDQNSTVLSESAISKVDDNLVFESNKIENEEPAGGDKT 208

Query: 181 GNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEKTENE 240
           GNEELVRDAEKESENDEC S +KNED  PARGDKNENEEPSEGNEIQNKETGE EKTENE
Sbjct: 209 GNEELVRDAEKESENDECVSCDKNEDEVPARGDKNENEEPSEGNEIQNKETGEQEKTENE 268

Query: 241 ENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 300
           ENKEDKSEGE SKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF
Sbjct: 269 ENKEDKSEGEPSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDGVGLTTSF 328

Query: 301 GLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 360
           GLSNNGSSALFGTSGSS VSKSE+SGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW
Sbjct: 329 GLSNNGSSALFGTSGSSTVSKSERSGFPSMQEVAVETGEENEKVVFNADSILFEFIDGSW 388

Query: 361 KERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 420
           KERGKGELKVNVPTSG GRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST
Sbjct: 389 KERGKGELKVNVPTSGTGRGRILMRARGNYRLILNASLYPDMKLTNMDKRGITFACMNST 448

Query: 421 SDGKDGLSTFGVKFKDVSIVEEFRAAVTEHK 451
            DGKDGLSTFGVKFKDVSIVEEFRAAVTEHK
Sbjct: 449 IDGKDGLSTFGVKFKDVSIVEEFRAAVTEHK 479

[Close]

BLAST of Chy1G020540 vs. TAIR 10
Match: AT1G52380.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 323.2 bits (827), Expect = 3.5e-88
Identity = 226/491 (46.03%), Postives = 297/491 (60.49%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGLDDDEDVSEQETGTFKRASEEVLATRRIVKVRRG 60
           MGD+EN    +KKR A ++LSRDNPGLDDD+D +E E+GTFK+AS+EVLA+RRIV+V+R 
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 61  STTSAP--SSNPFAGIRLVP-------PIENSGSVAEVRCDTEAAGEKAGSDEANGKDIP 120
             ++AP  +SNPFAGI+LVP       P+  +  +AE +    A  E    D     DI 
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTTAPASTPVGTNAPLAESKL---APAEAVVEDNQKASDI- 120

Query: 121 HEMTQIDGDHSDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVD----DNLVSES 180
                   +  DE    K+D  +A      +  D++     +SA  +V       +VS  
Sbjct: 121 --------EEGDEVDSKKVDVKDAVGEETEKTKDKDDNHCGKSADVQVAATEVAQMVSCD 180

Query: 181 NKIENEEPVGGDKTGNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEI 240
             + N    G D+T         EK+S                  GD+ E +E  EGN I
Sbjct: 181 TNVCNNAVEGTDQTD-----FPLEKDS-----------------GGDQAEKKE-KEGNGI 240

Query: 241 QNKETGELEKTENEENKEDKSEGETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSF 300
           +                    E + + +    +SFQQ SS++NAFTGLA T  S S+FSF
Sbjct: 241 E--------------------EADKNGDNGAFSSFQQHSSNKNAFTGLASTEASGSSFSF 300

Query: 301 GNIPKD---GVGLTTSFGLSNNGSSALFGTSGSSIVSKSEKSGFPSMQEVAVETGEENEK 360
           G + +D   G G    FGL ++ SS++FG +GSSI+ KSE SGFP  QEV+ ETGEENEK
Sbjct: 301 GLVSQDGSTGTGSLFGFGLPSSNSSSIFGATGSSIIKKSEGSGFPPKQEVSTETGEENEK 360

Query: 361 VVFNADSILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMK 420
           V F+ADSI+FE++DG WKERGKGELKVNV +S  G+ R++MRA+GNYRLILNASLYP+MK
Sbjct: 361 VAFSADSIMFEYLDGGWKERGKGELKVNV-SSNDGKARLVMRAKGNYRLILNASLYPEMK 420

Query: 421 LTNMDKRGITFACMNSTSDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKD--------KAS 467
           L NMDK+GITFAC+NS S+GK+GLSTF +KFKD +IVEEFR A+ +HKD        + S
Sbjct: 421 LANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTIVEEFRVAIDKHKDSKPMEKAAEKS 435

[Close]

BLAST of Chy1G020540 vs. TAIR 10
Match: AT3G15970.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 309.3 bits (791), Expect = 5.3e-84
Identity = 224/485 (46.19%), Postives = 295/485 (60.82%), Query Frame = 0


Query: 1   MGDAENATS-TKKRAAGRELSRDNPGL-DDDEDVSEQETGTFKRASEEVLATRRIVKVRR 60
           MGD++NA   ++KR A +ELSRDNPGL DDDED S  E+GTF  AS+EVLA+RRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 61  --GSTTSAPSSNPFAGIRLVPPIENSGSVAEVRCDTEAAGEKAGSDEANGKDIPHEMTQI 120
              S T+ P+SNPF GIRLVP    + S A        +   AG  E           + 
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLS---AGKQETLADGRSDATKET 120

Query: 121 DGDHSDEPVQSKIDTSEAKSVPKVQPVDQNSTVSSESAISKVDDNLVSESNKIENEEPVG 180
           DGD       SK  +    +V K +      +  ++  I   +  +    N +E     G
Sbjct: 121 DGD-------SKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEG----G 180

Query: 181 GDKTGNEELVRDAEKESENDECASGNKNEDVDPARGDKNENEEPSEGNEIQNKETGELEK 240
           G    NE    D  K +   E A+G +         D N N    EG++   K+TG   +
Sbjct: 181 GAVNKNE----DEIKTTMVTEVAAGEETVK------DDNNNSNTVEGSDCVVKDTGG-NQ 240

Query: 241 TENEENKEDKSEG-ETSKEAAPLNSFQQLSSSQNAFTGLAGTGFSTSTFSFGNIPKDG-- 300
           TE E  + D +E  E + ++  L+SF Q SSS+NAFTGLA TGFS S+FSFG +P++G  
Sbjct: 241 TEKEGKEGDGNEDTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGST 300

Query: 301 ----VGLTTSFGLSNNGSSALFGTS-GSSIVSKSEK--SGFPSMQEVAVETGEENEKVVF 360
                  + SFG +NNG+S+LFG S  +SI +KS +  + FPS Q+V+VETGEENEK  F
Sbjct: 301 GSGSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAF 360

Query: 361 NADSILFEFIDGSWKERGKGELKVNVPTSGIGRGRILMRARGNYRLILNASLYPDMKLTN 420
            ADS++FE+++G WKERGKGELKVN+ T+   + R++MR++GNYRL LNASLYP+MKL  
Sbjct: 361 TADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAK 420

Query: 421 MDKRGITFACMNSTSDGKDGLSTFGVKFKDVSIVEEFRAAVTEHKDKASSTV-----LKT 467
           MDK+GITFAC+NS SD KDGLST  +KFKD ++VEEFRA + EHKD   S       LKT
Sbjct: 421 MDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKT 460

The following BLAST results are available for this feature:

BLAST of Chy1G020540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C829	5.0e-87	46.03	Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE...	[more]
Q9LW88	7.4e-83	46.19	Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE...	[more]
A0A0B4K7J2	4.0e-12	33.83	E3 SUMO-protein ligase RanBP2 OS=Drosophila melanogaster OX=7227 GN=Nup358 PE=1 ...	[more]

BLAST of Chy1G020540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAD0	2.1e-237	97.00	RanBD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446650 PE=4...	[more]
A0A1S4E3Q0	7.1e-230	94.64	nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BX12	7.1e-230	94.64	Nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CHQ9	2.5e-222	93.87	nuclear pore complex protein NUP50A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UW04	3.2e-222	94.68	Nuclear pore complex protein NUP50A isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Chy1G020540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659558.1	1.40e-303	97.00	nuclear pore complex protein NUP50A [Cucumis sativus] >KGN45347.1 hypothetical p...	[more]
XP_008462135.1	1.12e-293	94.64	PREDICTED: nuclear pore complex protein NUP50A isoform X1 [Cucumis melo] >XP_008...	[more]
TYK04047.1	3.20e-293	94.64	nuclear pore complex protein NUP50A isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008462138.1	1.60e-283	93.87	PREDICTED: nuclear pore complex protein NUP50A isoform X2 [Cucumis melo]	[more]
KAA0059280.1	6.10e-283	94.68	nuclear pore complex protein NUP50A isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G020540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52380.1	3.5e-88	46.03	NUP50 (Nucleoporin 50 kDa) protein	[more]
AT3G15970.1	5.3e-84	46.19	NUP50 (Nucleoporin 50 kDa) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 324..450 e-value: 7.2E-18 score: 75.4
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 335..451 e-value: 4.1E-17 score: 62.6
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 327..456 score: 18.444666
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 318..463 e-value: 2.3E-34 score: 120.2
IPR015007	Nuclear pore complex, NUP2/50/61	PFAM	PF08911	NUP50	coord: 12..73 e-value: 9.7E-16 score: 58.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..162
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..466
None	No IPR available	PANTHER	PTHR23138:SF142	NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATED	coord: 1..466
None	No IPR available	CDD	cd13169	RanBD_NUP50_plant	coord: 337..454 e-value: 4.21461E-66 score: 206.146
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 327..455

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G020540.1	Chy1G020540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0051028	mRNA transport
biological_process	GO:0015031	protein transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0005096	GTPase activator activity