Chy1G015770 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G015770
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Elongation factor
Location	chrH01: 21723860 .. 21725169 (-)
RNA-Seq Expression	Chy1G015770
Synteny	Chy1G015770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGTTCAAATCCTTCCTCATTTCACCATTCAAGAAGCTTTGGGGTCGTCTTCACTCCCCTCACAGATCAAACCGTAATTCTCTACTTCATCCCTAATTCATCATCCACGTCGGTTTTTGTTCTATCTTTTGTCATCGACATTGATTGATCTATATCTAACTATTTCGTGATGGTTTCTTTTCCAATGTAATACTTCGGAGGTTGTTGTTCGTATTTATCGGTTTAGTTGAGTTTTTATTTTCTTTCAAAGACACAACTTGGTATGAATAATTTGCTTTAGATTGATTTCTTTTCAAGAGCTTAAAAATAAAATCTTTTCTTTTTCGTTTTTTCTAAACATAGAAATTCAATCCAAACAAAATCCTACATTGTTAGTTATTCCTCCCATAGTCTTGTGTTCATCGTGTTTTATTTTTTATTTTTATTTTAGTTTCTTTGTCAATTCAAATAAGTGGCAATTTAGCCATTCCATAGTTAGCTCTTTTTAGAAAAATTAAATCTATTTGTTCTCCAATTTTTTTCATATTTTCTATCTTTTTCTTAAGTATAAAAATAATTCGTTCTCGAGCCAACTTATAAAAACAAAAACAAATTTTTAAAAGCTACTTGTTTTTTTTTAAAAAAACTTGGTATGATTTTTAAAATCGTAAATAATTTAAGTTGATAAAAGAAAAAGAAACTAAGAGTTAGAATGAATGTTTATAGCTACGATTTTTGGTTGGTAAATAACACTTAAAATTTTGTATTGTTGGTATAGATTTTGATTTTTACAGTGACATTGCTTAATTTACACAGTAAGAAAATCTATTTTTCCAAACGCGAGGTAAACTACTCTTGATTAATTAACTAACCACATTTATAAATGATTTCTACCCAAAATGGTAATAGAATCAATTTAACAGAAAATTAAAATATGGGAGAAGACTAAACTTGAAACTTTTGAAATAATAGAAGCTAAATTGTCAAAAATACCCTAATTATAATAGGGATCAAAATGCTTATTTTTAGCTTTTTAATTAATTTAGCTTTTTTCTCAGTGATAGATGAAGGATCGAACCTAGCTCGATAGTTATCGTACATATTTGATTGACAAATAAATTAGAGAAAGAATGTTCAAATTTTATCTAATCTCAATGTGCTCACCATGAACTTTTGGTAATCTTTTGTTATTTTTTTACGTAGGAAAAGGAATCTACATTTTGTATAAAGATGTGAAGTCTTGCCCTTGTGAAGATGTTCAAATGCTTTGGTCCATTCTCGTGCAGGAGAGTGCCTCTCCTCCTAATTCACCATTACCATCTTGA

mRNA sequence

ATGGGATGGTTCAAATCCTTCCTCATTTCACCATTCAAGAAGCTTTGGGGTCGTCTTCACTCCCCTCACAGATCAAACCGAAAAGGAATCTACATTTTGTATAAAGATGTGAAGTCTTGCCCTTGTGAAGATGTTCAAATGCTTTGGTCCATTCTCGTGCAGGAGAGTGCCTCTCCTCCTAATTCACCATTACCATCTTGA

Coding sequence (CDS)

ATGGGATGGTTCAAATCCTTCCTCATTTCACCATTCAAGAAGCTTTGGGGTCGTCTTCACTCCCCTCACAGATCAAACCGAAAAGGAATCTACATTTTGTATAAAGATGTGAAGTCTTGCCCTTGTGAAGATGTTCAAATGCTTTGGTCCATTCTCGTGCAGGAGAGTGCCTCTCCTCCTAATTCACCATTACCATCTTGA

Protein sequence

MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPPNSPLPS*

Homology

[Close]

BLAST of Chy1G015770 vs. ExPASy TrEMBL
Match: A0A0A0K7C3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G388370 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.8e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGWFKSFLISPFKKLW RLHSPH+SNRKGIYILYKDVKSCPCEDVQMLWSILVQ SASPP
Sbjct: 1  MGWFKSFLISPFKKLWDRLHSPHKSNRKGIYILYKDVKSCPCEDVQMLWSILVQ-SASPP 60

Query: 61 NSPLPS 67
          NSPLPS
Sbjct: 61 NSPLPS 65

[Close]

BLAST of Chy1G015770 vs. ExPASy TrEMBL
Match: A0A498KIY5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017574 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGW +S L+SP KKLW RLHS HR  RKGIYILYKDV+SCPCEDV +LWSILV   + P 
Sbjct: 1  MGWLRS-LVSPLKKLWDRLHSSHR-KRKGIYILYKDVRSCPCEDVHVLWSILVDSQSHPT 60

Query: 61 NSPLPS 67
             LPS
Sbjct: 61 PPALPS 64

[Close]

BLAST of Chy1G015770 vs. ExPASy TrEMBL
Match: K7MYL2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G157600 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGWF+S L+ P KKLW RLHS H+  R+GIYILYKDVKSCPCEDV +LWSILV+  A+P 
Sbjct: 1  MGWFQS-LLCPLKKLWDRLHSSHK-KRRGIYILYKDVKSCPCEDVHVLWSILVESGAAPA 60

Query: 61 NSP 64
          + P
Sbjct: 61 SLP 61

[Close]

BLAST of Chy1G015770 vs. ExPASy TrEMBL
Match: M5VTA3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G268200 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.8e-16
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGW +S L+SP KKLW RLHS HR  R+GIYILYKDV+SCPCEDV +LWSILV+   +PP
Sbjct: 1  MGWLQS-LVSPLKKLWDRLHSTHR-KRRGIYILYKDVRSCPCEDVHVLWSILVESHTAPP 58

[Close]

BLAST of Chy1G015770 vs. ExPASy TrEMBL
Match: A0A6J5VLZ9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS47155 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.8e-16
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGW +S L+SP KKLW RLHS HR  R+GIYILYKDV+SCPCEDV +LWSILV+   +PP
Sbjct: 1  MGWLQS-LVSPLKKLWDRLHSTHR-KRRGIYILYKDVRSCPCEDVHVLWSILVESHTAPP 58

[Close]

BLAST of Chy1G015770 vs. NCBI nr
Match: KGN44804.1 (hypothetical protein Csa_015628 [Cucumis sativus])

HSP 1 Score: 133 bits (335), Expect = 3.23e-39
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGWFKSFLISPFKKLW RLHSPH+SNRKGIYILYKDVKSCPCEDVQMLWSILVQ SASPP
Sbjct: 1  MGWFKSFLISPFKKLWDRLHSPHKSNRKGIYILYKDVKSCPCEDVQMLWSILVQ-SASPP 60

Query: 61 NSPLPS 66
          NSPLPS
Sbjct: 61 NSPLPS 65

[Close]

BLAST of Chy1G015770 vs. NCBI nr
Match: RXI05532.1 (hypothetical protein DVH24_017574 [Malus domestica])

HSP 1 Score: 92.4 bits (228), Expect = 6.92e-23
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGW +S L+SP KKLW RLHS HR  RKGIYILYKDV+SCPCEDV +LWSILV   + P 
Sbjct: 1  MGWLRS-LVSPLKKLWDRLHSSHRK-RKGIYILYKDVRSCPCEDVHVLWSILVDSQSHPT 60

Query: 61 NSPLPS 66
             LPS
Sbjct: 61 PPALPS 64

[Close]

BLAST of Chy1G015770 vs. NCBI nr
Match: KAG2697077.1 (hypothetical protein I3760_07G089400 [Carya illinoinensis] >KAG6647612.1 hypothetical protein CIPAW_07G090400 [Carya illinoinensis] >KAG6703607.1 hypothetical protein I3842_07G092700 [Carya illinoinensis] >KAG7970537.1 hypothetical protein I3843_07G089000 [Carya illinoinensis])

HSP 1 Score: 92.0 bits (227), Expect = 9.10e-23
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGW KS L+SP KK+W RLHS HR  R+GIYILYKDVKSCPCEDVQ+LWSILV ES +P 
Sbjct: 1  MGWLKS-LLSPLKKIWNRLHSSHRE-RRGIYILYKDVKSCPCEDVQVLWSILV-ESRTPA 60

Query: 61 NSP 63
          + P
Sbjct: 61 SLP 60

[Close]

BLAST of Chy1G015770 vs. NCBI nr
Match: XP_025982996.1 (uncharacterized protein LOC113000477 [Glycine max] >KHN02570.1 hypothetical protein glysoja_002594 [Glycine soja] >KAG4913164.1 hypothetical protein JHK86_053597 [Glycine max] >KAG4928061.1 hypothetical protein JHK85_054547 [Glycine max] >KAG5083584.1 hypothetical protein JHK84_053622 [Glycine max] >KAG5086352.1 hypothetical protein JHK82_053749 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 9.34e-23
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MGWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESASPP 60
          MGWF+S L+ P KKLW RLHS H+  R+GIYILYKDVKSCPCEDV +LWSILV+  A+P 
Sbjct: 1  MGWFQS-LLCPLKKLWDRLHSSHKK-RRGIYILYKDVKSCPCEDVHVLWSILVESGAAPA 60

Query: 61 NSP 63
          + P
Sbjct: 61 SLP 61

[Close]

BLAST of Chy1G015770 vs. NCBI nr
Match: KDO68697.1 (hypothetical protein CISIN_1g035399mg [Citrus sinensis])

HSP 1 Score: 90.9 bits (224), Expect = 2.61e-22
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 2  GWFKSFLISPFKKLWGRLHSPHRSNRKGIYILYKDVKSCPCEDVQMLWSILVQESAS 58
          GW  S ++SP KKLW RLHS HR  R+G+YILYKDVKSCPCEDVQ+LWSILV+  A+
Sbjct: 3  GWLHSLVVSPLKKLWDRLHSSHR-RRRGLYILYKDVKSCPCEDVQVLWSILVESHAA 58

The following BLAST results are available for this feature:

BLAST of Chy1G015770 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G015770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7C3	7.8e-29	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G388370 PE=4 SV=1	[more]
A0A498KIY5	2.0e-16	68.18	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017574 PE=4 SV=1	[more]
K7MYL2	2.6e-16	68.25	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G157600 PE=4 SV=1	[more]
M5VTA3	5.8e-16	70.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G268200 PE=4 SV=1	[more]
A0A6J5VLZ9	5.8e-16	70.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS47155 PE=4 S...	[more]

BLAST of Chy1G015770 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44804.1	3.23e-39	95.45	hypothetical protein Csa_015628 [Cucumis sativus]	[more]
RXI05532.1	6.92e-23	68.18	hypothetical protein DVH24_017574 [Malus domestica]	[more]
KAG2697077.1	9.10e-23	73.02	hypothetical protein I3760_07G089400 [Carya illinoinensis] >KAG6647612.1 hypothe...	[more]
XP_025982996.1	9.34e-23	68.25	uncharacterized protein LOC113000477 [Glycine max] >KHN02570.1 hypothetical prot...	[more]
KDO68697.1	2.61e-22	70.18	hypothetical protein CISIN_1g035399mg [Citrus sinensis]	[more]

BLAST of Chy1G015770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..58
None	No IPR available	PANTHER	PTHR33181:SF30	OS07G0204400 PROTEIN	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G015770.1	Chy1G015770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
molecular_function	GO:0003746	translation elongation factor activity