Chy1G015460 (gene) Cucumber (hystrix) v1

Overview
NameChy1G015460
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationchrH01: 21352307 .. 21356976 (+)
RNA-Seq ExpressionChy1G015460
SyntenyChy1G015460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAGATTTGTTTACTTATAATTCACAGATGGAGTGGTTTCTTAAGGTTGGTGACCTGAGTAGTACCAAGGAGTTGTTCGTTAGTATGTCAAGTAAAGGATATGAATCTCTGTATGAATTTGATGTCATTAGTTACACTGTGTTAATCTATGGGTATTGTAAAACCCTGAAGGTGGAAGAAGCAATGAAGCTTTATAATAAAATGCTTCTAGTTGGACAAAGGCTAGATAATGAAAACATATATAGTGCCTTTGTTAAAAGGGCTTTTTTTTGGTGGCAAGGTTGGTGATGAAAAGAAACTGCAATTTGGTGTCATTAAAACTTATGATATTCCCAAAGATTTATATGTATGTGGTATTTTCTTTGATGGGTTGTGTAAGAATGGTTGTTTATTTGAAGTAACAGAAATTTTCAATTAGCTAAAATCATACAACATGAAATTGGACATTGAAAGCTTTAATGGTCTATGCAAAGCAGGGAAACTTGAAAATGCTTGGGATCTATTTGAAAAATTATCTCGGGAAGGGCTTCAACCGAATGTTGTGACTTATTCCATTATGATTGATTCATGGGTTTTGTAAAGAGGTACAAGCAGATAAGAGAATTGTTGTGTATCAAAAGATGGAAGAAAATGGTTGTACTCCCGACTTCATTACTTACAATACCTTTATTCATGGTTTATGCAAGAGTAATAAGTTAAAGGAATAGGATGATTTAGAAGGGTGTGCTTCTAGATGACGGAATTTGCACTATAGTTGTAGACATGACATGTGGAATGTCTAGACTTGCTTCCTTGTATGCGTTACTGGAGTTTTAGGAGAATCATATTTATCAAGAGCAAATAAACCAACATGGAAAAAATAAGACAATAAAGATCGTGGAGGTGGTCATTGTAGCGATAAGAACCAGGGTAACTATTAGATACAGAGGATGGGTACTGGATACCGTTTGGGATATGTGATGCTTTTAGTTTTAGTCCTTGAGCTTTTGCCATTTTTAAATTTAGTTCTAAACATATCCTAATATATTACTCCTATGTGGAACACCTTTTTTTCTTTATCCAATCTTAGAGAAACTAAAATTTAATATTGAACTTGTGGTGACGTTTGAGTGGAGTGTTCAATCTACAAAAAAAGCACTTATAAATATCCACTCTTAACAAAATAAAAAATTTAAATGTATTTTTTTATTGTGTCCTATTTGGATCCGTATTTAGTTGTTGAACTTGTTTGGACTTAGTTGGGATTTTTGTATGAAACCTTTCATCATACAGGTGAGATTGACCTGCTTAACTTCAAATCCCTCCAAATTTACCATTAAAAAGATTTGATACTGAAAAGATTGCATTATTTTTCAAAAACATGGTAGAATCTTAACATGCTCGAAATTTCACCGAAAAAGCCAAAAGCAATCGATAGTACAAAAAAAGTTAGATATTTAAGTAAATCTTGGTGGTAGGATAACAATTAGTTTAATAAGTTGAAAAAAATGTGCTGGTCTTGATAAGTGAAATCCCACAGCAATAGATTTTAAAATCCACTATGAAATAGAATGATCTATGTAAAAAACATCGTTGAAACCTACGTGTTTTCCATGCCTAAACACATTCGTATTCTAAAACTAAACTTCATCTAAGAAACAATATGAATCTAACTAAAGTTCCTCTAAAGAAACAAAATAAAACACATCATCCACCAATGTTTATCACTACTATTAAACATTCCTTATCATAACACAACATCACCATTACTTCATTATTTGTAAACTCTTCAAGCCCTTGTACAGAGGTCGTTCAAAGCCTGTTTACTGCTATTTCTTGCCCATCTATCAATTTTCCCTACAAAAAATGAATTTGGCAAATTTCCGTAATCTTTCTTCAACTTTAACCAGCAAAAAGACAAGAAAGAAAGAACAAACATACTATATGTTCCCACTCACCCTTACCAAGCTCGTTACTAAAATAAAACTTGTCAGTTGCAATTGCTAGCTTAACAAAATAATAACAATGATAATAAAAGACAACTTCTGAAGCTTAACTTTATTCGCCGATAAATTCCTGTGATTCGGCAACTAATTCAGCATTAGATCACCTAGCATTGTGTGTTATAGTTGGCAAAAGAGATATTGGTTTTCAAGATGAGATAAGTTGAGCATCAAATCAATCAAAAGATTAATATTCGTTTGCATCCTTATCATTTGGCACGTAATGAAGTATAAAATGCAATTTTAACACAGTTTCCAATGCTTGACAAATTCAACCAGTAAATTCAAACCAAACATAACAAGACTACTACACAAATCCCACATATGAATAAGAAGATTCAACATTGGAATTAGTTTGAGTATTGAACAAGAAGATTCAGTATTTGTATCCTTTCCATTCTCAAAGGCTTACAACTGCATGTACTTTAATTAAACATTTCACAATGTGAATTTAGAACTATTATAAGCTCCATTGCACACTTTAATCATACGTTTAATTACATAAAATACCTAAGAACAATGATGTGCCCCTATTTCAAACCTAGTACCTTTCGCTAGTTTTTTTTATTTAATACGATAACTCCATTCGACACAACTATAATGATTTGAGAGGAGATGAAAAAGGAAGTGCATTGTTTAGAGGAACATAAAGAACAAAAGTGTGCACAAATGATAAAATTGGGTGATGTTGAATGTGTCTTGTGCAAAGTTTTTAGGAAGCTTTTTCAATTGATATGATTCTCTTAGGATCAATAAGGAGAAAAATTCACTGTTTTTAAACAAACTTGTCATGTTCTTCTATAAATAATAAGAACAAAACTTTAGCTAGTATGTTTTTTATGTTTTTAAATATTTTCAACAATTTTATCATTTAAAATATATATTTTTTAAAAAACCTGGTCTTATACTTATTTTCTAATTTTTTTTTAATATATATATATATATATAAAAGCATGCATTAAGACTTCACTTTATTGAAAATATAACCCCAAGTTGGGTATTGATGAAGTTGATCATTTCATAAGAAAAAAAAGCTAGTTGAGGTGAAATTAAGTATTGAATGCTATTTTTATTATTTGCATAGAAATATTGTTAGTTAGTCACATGTGCAACAAACAATTGTTTTTAATATATTTTTAATAAATAGTCAATTCCTTTTAAAAAAAGATATTTAAGGACGAGTGAATTCCTGTAACGTTAATCTTTGATTAACACATAAGAAAGTGGTGTTGAAAGTGTTCGATGTCGGTCATCTTTAATGTCGATTGAAACTTGATACTAAAGGTGACTGACGTTGAACATGGTTAATAATACCTTCTTCGACAATCGTTGCCTAACTAACATTGTACCCCTATAATGTCAATTTATAACACAATTTGTACCAGTGACGATACAACAAATTGGTGTGTGTGTGTTTTTCAAAATTGGTAGATTGTCTCGCATCGTACCATTATAATATAAGTTCTTATCACAATTTGTCACTGTACAACAAATTAGTGTGTAGCACAAAGATTTAGTTCGAATTAGGTCGATTATTTAGTTATATTTCATTAGTTTTGATCTATAGGTATTTTTCAAACGAGAGAGTCAATTTTCCAACAAAAAAAAACGAAGATTCTCCTCCACTATAGAATTTTTTACAATTGCAACCTTAAATTTGTCAATCTAGCTAGTCCCTAAAGTTAGTAGTGTTGCTTGATATTAATTTACAAAAGTAGAAATACACGCAAAGAAAGAGGATTTTGGGGGAGACTGGAAATTATGTGAGAAAGAGAGGGATGAAAGGTAGACAAATGAAAGAGAGGAATGTTTACTAATGGGGAAAAAGAATAGATAGTTAGCTACAATGTTGGTTCTAAATCGATATCGTAGTCTCATTAAATATGTCTTTAATGTTGGTTTAAAACGACACTAAAATTATTTTTATTAAAATCGACATTGTACATATGTTTTTTGTTTCTTTGTCCACTTTTATCAAAATCAAAATTTCTTGTAGTGAGAAGAAAACAAGGAAAAAATTGTGGTCGATCATAAAAGAAGAAAAAAAACTAATATAAGCAAGGTTTTTTGTAGTACAAATATAAACATAGTTCAATAGACGTAAAATATATATTTATGTTAAAAAAATCTTATTATTTTCGACTTCTATCTATACATATAAAAAAATTACATCAAATAACAAAAACATTAGAAAAAAAAAAAAAAACAGCTCATGACACCAATTTTTGCATATTGCGAATATAGCAAAATTAGTGATATCAAACGACTATCAGTAGATAATTATAGGGCTATCGGTAATCATAAGGTTATCAAACGATAATCACAAGACTATCAAAGAGTCATAACTTTTAAATTTGCTACTTTTGTAAATTTAGATAACGTTGTGACATGGACTCTATCATAAATTTTCTTTCCTATTTTTGGAAAGCCCCTAAAAAATGTGAAATATTGCAATATTTTTAATTTTCATTGTAATAATCCACACTACCACTTAAATGTTGGTAGCCCAAATAGATAGCCACTATGTATTGTAACAAAAACCATACACACAAAATTAATTAGTAAGAAAATAAATGTATATTGGATGAAAACAAGCTTCTTTTTATTCGTATAGTCACTTCAAAAAGGGTTAACGAAGAGGATAAGAAAGACGACTCCTTTTCCTTCACCGGGTCCGGTTAG

mRNA sequence

ATGGCTCCAGATTTGTTTACTTATAATTCACAGATGGAGTGGTTTCTTAAGGTTGGTGACCTGAGTAGTACCAAGGAGTTGTTCGTTAGTATGTCAAGTAAAGGATATGAATCTCTGTATGAATTTGATGTCATTAGTTACACTGTGTTAATCTATGGGTATTGTAAAACCCTGAAGGTGGAAGAAGCAATGAAGCTTTATAATAAAATGCTTCTAGTTGGACAAAGGCTAGATAATGAAAACATATATAGTGCCTTTGTTAAAAGGGCTTTTTTTTGGTGGCAAGTCACTTCAAAAAGGGTTAACGAAGAGGATAAGAAAGACGACTCCTTTTCCTTCACCGGGTCCGGTTAG

Coding sequence (CDS)

ATGGCTCCAGATTTGTTTACTTATAATTCACAGATGGAGTGGTTTCTTAAGGTTGGTGACCTGAGTAGTACCAAGGAGTTGTTCGTTAGTATGTCAAGTAAAGGATATGAATCTCTGTATGAATTTGATGTCATTAGTTACACTGTGTTAATCTATGGGTATTGTAAAACCCTGAAGGTGGAAGAAGCAATGAAGCTTTATAATAAAATGCTTCTAGTTGGACAAAGGCTAGATAATGAAAACATATATAGTGCCTTTGTTAAAAGGGCTTTTTTTTGGTGGCAAGTCACTTCAAAAAGGGTTAACGAAGAGGATAAGAAAGACGACTCCTTTTCCTTCACCGGGTCCGGTTAG

Protein sequence

MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKVEEAMKLYNKMLLVGQRLDNENIYSAFVKRAFFWWQVTSKRVNEEDKKDDSFSFTGSG*
Homology
[Close]
BLAST of Chy1G015460 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           +APD  TYNS ++ F K   L    ++F  M SKG E     D+++Y++LI  YCK  +V
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP----DIVTYSILINSYCKAKRV 405

Query: 61  EEAMKLYNKM 71
           ++ M+L+ ++
Sbjct: 406 DDGMRLFREI 411

[Close]
BLAST of Chy1G015460 vs. ExPASy Swiss-Prot
Match: Q9FLL3 (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           +AP++FTY S +  F   G +   +++F  M +KG       DV++YT LI G+CK  KV
Sbjct: 278 IAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFP----DVVAYTSLINGFCKCKKV 337

Query: 61  EEAMKLYNKM 71
           ++AMK++ +M
Sbjct: 338 DDAMKIFYEM 343

[Close]
BLAST of Chy1G015460 vs. ExPASy Swiss-Prot
Match: Q0WKZ3 (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX=3702 GN=At1g64580 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + P++FTYNS +  F   G L   K +F  M SKG       DV++Y  LI G+CK+ +V
Sbjct: 285 VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP----DVVTYNTLITGFCKSKRV 344

Query: 61  EEAMKLYNKMLLVG 75
           E+ MKL+ +M   G
Sbjct: 345 EDGMKLFCEMTYQG 354

[Close]
BLAST of Chy1G015460 vs. ExPASy Swiss-Prot
Match: Q9ZUE9 (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX=3702 GN=At2g06000 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-06
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3   PDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKVEE 62
           PD+ TYN+ ++ F K  +L+   E+F  + S    S+   DV++YT +I GYCK  K+ E
Sbjct: 239 PDIVTYNTLIQGFCKSNELNKASEMFKDVKS---GSVCSPDVVTYTSMISGYCKAGKMRE 298

Query: 63  AMKLYNKMLLVG 75
           A  L + ML +G
Sbjct: 299 ASSLLDDMLRLG 307

[Close]
BLAST of Chy1G015460 vs. ExPASy Swiss-Prot
Match: Q8S8P6 (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX=3702 GN=At2g32630 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.2e-06
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0 

Query: 7   TYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKVEEAMKL 66
           +Y + ++ + K G++   K LFV MSSKG +     + I+Y V+IY YCK  K++EA KL
Sbjct: 471 SYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQP----NAITYNVMIYAYCKQGKIKEARKL 530

Query: 67  YNKMLLVGQRLDN 80
              M   G   D+
Sbjct: 531 RANMEANGMDPDS 539

[Close]
BLAST of Chy1G015460 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.4e-19
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLF Y+S ME F  VGDL+S +ELFVSM SKG E     DVISYTVLI GYCKTLKV
Sbjct: 287 IVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEP----DVISYTVLINGYCKTLKV 346

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAF 92
           EEAMKLYN+MLLVG+R  N   Y A +   F
Sbjct: 347 EEAMKLYNEMLLVGKR-PNVITYGALLTGLF 372

[Close]
BLAST of Chy1G015460 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.4e-19
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + P++FTYNS ++ F  VGDL+S +ELFVSM SKG E     DVISYTVLI GYCKTLKV
Sbjct: 287 IVPNVFTYNSLLKGFCMVGDLNSARELFVSMPSKGCEP----DVISYTVLINGYCKTLKV 346

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAF 92
           EEAMKLYNKMLLVG+R  N   Y A +   F
Sbjct: 347 EEAMKLYNKMLLVGKR-PNVITYGALLTGLF 372

[Close]
BLAST of Chy1G015460 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.4e-19
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLF Y+S ME F  VGDL+S +ELFVSM SKG E     DVISYTVLI GYCKTLKV
Sbjct: 287 IVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEP----DVISYTVLINGYCKTLKV 346

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAF 92
           EEAMKLYN+MLLVG+R  N   Y A +   F
Sbjct: 347 EEAMKLYNEMLLVGKR-PNVITYGALLTGLF 372

[Close]
BLAST of Chy1G015460 vs. ExPASy TrEMBL
Match: A0A5A7TFD7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001070 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLFTY S +E F  VGDL S KELF+SM SKGYE     DVISYTVLIYGYCKTL +
Sbjct: 303 IVPDLFTYTSLIEGFCLVGDLDSAKELFLSMPSKGYEP----DVISYTVLIYGYCKTLNM 362

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAF 92
           EEAMKLY KML VG+  D +  +S  +K  F
Sbjct: 363 EEAMKLYYKMLHVGKWPDMKT-FSVLLKGLF 388

[Close]
BLAST of Chy1G015460 vs. ExPASy TrEMBL
Match: A0A1S3BHF7 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489690 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLFTY S +E F  VGDL S KELF+SM SKGYE     DVISYTVLIYGYCKTL +
Sbjct: 234 IVPDLFTYTSLIEGFCLVGDLDSAKELFLSMPSKGYEP----DVISYTVLIYGYCKTLNM 293

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAF 92
           EEAMKLY KML VG+  D +  +S  +K  F
Sbjct: 294 EEAMKLYYKMLHVGKWPDMKT-FSVLLKGLF 319

[Close]
BLAST of Chy1G015460 vs. NCBI nr
Match: KAA0059713.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 2.44e-23
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + P++FTYNS ++ F  VGDL+S +ELFVSM SKG E     DVISYTVLI GYCKTLKV
Sbjct: 287 IVPNVFTYNSLLKGFCMVGDLNSARELFVSMPSKGCEP----DVISYTVLINGYCKTLKV 346

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAFFWWQV 96
           EEAMKLYNKMLLVG+R  N   Y A +   F   +V
Sbjct: 347 EEAMKLYNKMLLVGKR-PNVITYGALLTGLFLAGKV 377

[Close]
BLAST of Chy1G015460 vs. NCBI nr
Match: XP_008451225.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo] >XP_016901074.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 104 bits (260), Expect = 2.45e-23
Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLF Y+S ME F  VGDL+S +ELFVSM SKG E     DVISYTVLI GYCKTLKV
Sbjct: 287 IVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEP----DVISYTVLINGYCKTLKV 346

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAFFWWQV 96
           EEAMKLYN+MLLVG+R  N   Y A +   F   +V
Sbjct: 347 EEAMKLYNEMLLVGKR-PNVITYGALLTGLFLAGKV 377

[Close]
BLAST of Chy1G015460 vs. NCBI nr
Match: KAA0059628.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08161.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 2.45e-23
Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLF Y+S ME F  VGDL+S +ELFVSM SKG E     DVISYTVLI GYCKTLKV
Sbjct: 287 IVPDLFIYSSLMEGFCMVGDLNSARELFVSMPSKGCEP----DVISYTVLINGYCKTLKV 346

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAFFWWQV 96
           EEAMKLYN+MLLVG+R  N   Y A +   F   +V
Sbjct: 347 EEAMKLYNEMLLVGKR-PNVITYGALLTGLFLAGKV 377

[Close]
BLAST of Chy1G015460 vs. NCBI nr
Match: XP_008447180.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 102 bits (255), Expect = 6.53e-23
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLFTY S +E F  VGDL S KELF+SM SKGYE     DVISYTVLIYGYCKTL +
Sbjct: 155 IVPDLFTYTSLIEGFCLVGDLDSAKELFLSMPSKGYEP----DVISYTVLIYGYCKTLNM 214

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAFFWWQV 96
           EEAMKLY KML VG+  D +  +S  +K  F   +V
Sbjct: 215 EEAMKLYYKMLHVGKWPDMKT-FSVLLKGLFLAGKV 245

[Close]
BLAST of Chy1G015460 vs. NCBI nr
Match: XP_008447178.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 102 bits (255), Expect = 1.02e-22
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + PDLFTY S +E F  VGDL S KELF+SM SKGYE     DVISYTVLIYGYCKTL +
Sbjct: 234 IVPDLFTYTSLIEGFCLVGDLDSAKELFLSMPSKGYEP----DVISYTVLIYGYCKTLNM 293

Query: 61  EEAMKLYNKMLLVGQRLDNENIYSAFVKRAFFWWQV 96
           EEAMKLY KML VG+  D +  +S  +K  F   +V
Sbjct: 294 EEAMKLYYKMLHVGKWPDMKT-FSVLLKGLFLAGKV 324

[Close]
BLAST of Chy1G015460 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-08
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           +APD  TYNS ++ F K   L    ++F  M SKG E     D+++Y++LI  YCK  +V
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP----DIVTYSILINSYCKAKRV 405

Query: 61  EEAMKLYNKM 71
           ++ M+L+ ++
Sbjct: 406 DDGMRLFREI 411

[Close]
BLAST of Chy1G015460 vs. TAIR 10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           +AP++FTY S +  F   G +   +++F  M +KG       DV++YT LI G+CK  KV
Sbjct: 278 IAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFP----DVVAYTSLINGFCKCKKV 337

Query: 61  EEAMKLYNKM 71
           ++AMK++ +M
Sbjct: 338 DDAMKIFYEM 343

[Close]
BLAST of Chy1G015460 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 1   MAPDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKV 60
           + P++FTYNS +  F   G L   K +F  M SKG       DV++Y  LI G+CK+ +V
Sbjct: 285 VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFP----DVVTYNTLITGFCKSKRV 344

Query: 61  EEAMKLYNKMLLVG 75
           E+ MKL+ +M   G
Sbjct: 345 EDGMKLFCEMTYQG 354

[Close]
BLAST of Chy1G015460 vs. TAIR 10
Match: AT2G06000.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3   PDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKVEE 62
           PD+ TYN+ ++ F K  +L+   E+F  + S    S+   DV++YT +I GYCK  K+ E
Sbjct: 239 PDIVTYNTLIQGFCKSNELNKASEMFKDVKS---GSVCSPDVVTYTSMISGYCKAGKMRE 298

Query: 63  AMKLYNKMLLVG 75
           A  L + ML +G
Sbjct: 299 ASSLLDDMLRLG 307

[Close]
BLAST of Chy1G015460 vs. TAIR 10
Match: AT2G06000.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3   PDLFTYNSQMEWFLKVGDLSSTKELFVSMSSKGYESLYEFDVISYTVLIYGYCKTLKVEE 62
           PD+ TYN+ ++ F K  +L+   E+F  + S    S+   DV++YT +I GYCK  K+ E
Sbjct: 239 PDIVTYNTLIQGFCKSNELNKASEMFKDVKS---GSVCSPDVVTYTSMISGYCKAGKMRE 298

Query: 63  AMKLYNKMLLVG 75
           A  L + ML +G
Sbjct: 299 ASSLLDDMLRLG 307

The following BLAST results are available for this feature:
BLAST of Chy1G015460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQ838.3e-0737.14Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
Q9FLL38.3e-0738.57Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop... [more]
Q0WKZ31.9e-0640.54Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX... [more]
Q9ZUE93.2e-0638.89Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX... [more]
Q8S8P69.2e-0638.36Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX... [more]
BLAST of Chy1G015460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DYL64.4e-1964.84pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
A0A5A7UUW84.4e-1963.74Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3C8J04.4e-1964.84Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7TFD71.7e-1862.64Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BHF71.7e-1862.64pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isofor... [more]
BLAST of Chy1G015460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059713.12.44e-2361.46pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151... [more]
XP_008451225.12.45e-2362.50PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
KAA0059628.12.45e-2362.50pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08161... [more]
XP_008447180.16.53e-2360.42PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
XP_008447178.11.02e-2260.42PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
BLAST of Chy1G015460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G22470.15.9e-0837.14Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G41170.15.9e-0838.57Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G64580.11.3e-0740.54Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G06000.12.2e-0738.89Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G06000.22.2e-0738.89Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..99
e-value: 1.1E-15
score: 59.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 45..71
e-value: 5.6E-7
score: 27.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 6..35
e-value: 1.0
score: 9.8
coord: 45..71
e-value: 7.5E-8
score: 32.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..38
score: 9.317163
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 43..77
score: 10.764054
NoneNo IPR availablePANTHERPTHR47938:SF12PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIALcoord: 1..76
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G015460.1Chy1G015460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding