Chy1G015280 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G015280
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	PSII 6.1 kDa protein
Location	chrH01: 21096616 .. 21097607 (+)
RNA-Seq Expression	Chy1G015280
Synteny	Chy1G015280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCGCCTTCTGCAGTCGGCTTCACCCGCCCCTTTCCTTCTTGGTGAGTCGTTCTTTCGTTTCTATTACTCTCAAATCGGCCTTTTGTTTTTCTTGTATATTGAAGATTGTTGGGTTCATGTGAATCTTGGCTTTGGTTTTTACTTTTATGCTATTCTCATTTTTTTCCAAAGGTAGGGAAGTTCTTAAATATTCTTTCAGCCAATGGTATTTGTTAGGTGGTTTTTAAAATAACTAAAATCACTTTTGTCATTTTCAATTTACTTTGAACCGTGATTTTGATTGTCTAAAATCAATTTTCGATCAAATCTGACTTTACTTGATTAAAGACGTATTTTAGTGTGATTAATTGGTATAGCTTTTTTTATGCTTAGATTCTCTTAGAGTCAAATTTGTAAAGAACAATTTCACTCACATGGTTTAAATCAAAATTATATTACAAAAATTATAAGTTAGCACTAAGGTCATAATTGGCACAAAAAGTAACTTCAATTCTTGTTTGATCCAACAAATTCATAAATTCATTAATTGAGTTTGACCATGATTTATCAACTTCTTACCTTGTGGATTTTACAACTAAACAACTCATTCAGATTAAACAACTGCTTCATTGGCTGCAAACGTCATCTAAGAGTATATTTCAACATAGTTTGTATGGACTTCTCTTTGATGTAGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCCAGCAACTTGGGGATGGGGGCGTCCTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCGATGGCTTTGGTAGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

mRNA sequence

AACCGCCTTCTGCAGTCGGCTTCACCCGCCCCTTTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCCAGCAACTTGGGGATGGGGGCGTCCTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCGATGGCTTTGGTAGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

Coding sequence (CDS)

AACCGCCTTCTGCAGTCGGCTTCACCCGCCCCTTTCCTTCTTGGGTTACCTGCCTTGGGAAAGAAAGGAGGAGTGAGGTGTTCAATGGAAGGAAAGGGAAATGGAGAAGTAGAGAACAAATCCAGCAACTTGGGGATGGGGGCGTCCTTGATAGCTGCGGCGTGTGCTGCAACGATGTCGAGCCCGGCGATGGCTTTGGTAGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCATTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGCTCTCATTTGGGCATTCTACATTGTTTACACTTCTACTCTTGAAGAGGATGAAGAATCTGGCTTATCTCTTTAA

Protein sequence

NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL*

Homology

[Close]

BLAST of Chy1G015280 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.6e-34
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 1   NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 60
           +R+  S+SP   +LGLP++ K+  V CS+E K +      ++N  MGASL+AAA AAT+S
Sbjct: 22  SRVGVSSSP---ILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATIS 81

Query: 61  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           +PAMALVDER+STEGTGLPFGLSNNLLGWIL GVF LIWA Y VY S LEEDEESGLSL
Sbjct: 82  NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137

[Close]

BLAST of Chy1G015280 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 5.8e-32
Identity = 77/109 (70.64%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 13  LLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDER 72
           +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER
Sbjct: 30  VLGLPPMGKKKGGVRCSMETK-----QGNVSVMGAGVSAAATAALTAVMSNPAMALVDER 89

Query: 73  LSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           +STEGTGLPFGLSNNLLGWIL GVF LIW F+ VYTS+LEEDEESGLSL
Sbjct: 90  MSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

[Close]

BLAST of Chy1G015280 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 61/105 (58.10%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 14  LGLPALGKKGG--VRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPAMALVDERL 73
           LGLP +  +    VRC+   +        ++  G GASL+A A  A   +PAMALVDER+
Sbjct: 22  LGLPQMRARRSERVRCNYSKEA---ATPAAAVKGAGASLLAMAATA---APAMALVDERM 81

Query: 74  STEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESG 117
           STEGTGL  GLSNNLLGWILLGVF LIW+ Y +YTS LEEDEESG
Sbjct: 82  STEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of Chy1G015280 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 42  SNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAF 101
           S +    ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVF  +WA 
Sbjct: 36  SEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAI 95

Query: 102 YIVYTSTLE--EDEESGLSL 120
           + +    L   ED + GL L
Sbjct: 96  WFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of Chy1G015280 vs. ExPASy TrEMBL
Match: A0A0A0K4V6 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.4e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 60
           NRLL SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS
Sbjct: 19  NRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 78

Query: 61  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Sbjct: 79  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Chy1G015280 vs. ExPASy TrEMBL
Match: A0A1S3BQI5 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 4   LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA 63
           L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA
Sbjct: 23  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA 82

Query: 64  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           MALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 83  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Chy1G015280 vs. ExPASy TrEMBL
Match: A0A5D3DRC0 (PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00650 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.6e-54
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 4   LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA 63
           L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPA
Sbjct: 23  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPA 82

Query: 64  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           MALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 83  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Chy1G015280 vs. ExPASy TrEMBL
Match: A0A6J1GQI7 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.6e-51
Identity = 106/119 (89.08%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 60
           NR L +ASP+PFLLGLPALGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MS
Sbjct: 19  NRPLPAASPSPFLLGLPALGKKGGVRCSMEGKANGDVENKSSTLGMGASLVAAAYAASMS 78

Query: 61  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF  IWAFYI+YTSTLEEDEESGLSL
Sbjct: 79  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWAFYIIYTSTLEEDEESGLSL 137

[Close]

BLAST of Chy1G015280 vs. ExPASy TrEMBL
Match: A0A6J1H5C6 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.9e-50
Identity = 105/119 (88.24%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 1   NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 60
           NR L +ASP  FLLGLPALGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMS
Sbjct: 19  NRPLPAASPTTFLLGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMS 78

Query: 61  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVF  IW FYIVYTSTLEEDEESGLSL
Sbjct: 79  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Chy1G015280 vs. NCBI nr
Match: XP_004146953.1 (photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus] >KGN44755.1 hypothetical protein Csa_015975 [Cucumis sativus])

HSP 1 Score: 227 bits (579), Expect = 1.62e-74
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 60
           NRLL SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS
Sbjct: 19  NRLLPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 78

Query: 61  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 119
           SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL
Sbjct: 79  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Chy1G015280 vs. NCBI nr
Match: XP_038900227.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 220 bits (561), Expect = 8.98e-72
Identity = 114/119 (95.80%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   NRLLQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 60
           NR L +ASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS
Sbjct: 19  NRPLPAASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMS 78

Query: 61  SPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 119
           SPAMALVDERLSTEGTGLPFGLSNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 79  SPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL 137

[Close]

BLAST of Chy1G015280 vs. NCBI nr
Match: XP_031745255.1 (photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 220 bits (560), Expect = 1.66e-71
Identity = 118/127 (92.91%), Postives = 118/127 (92.91%), Query Frame = 0


Query: 1   NRLLQSASPAPFLL--------GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIA 60
           NRLL SASPAPFLL        GLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIA
Sbjct: 19  NRLLPSASPAPFLLVCMDIFDIGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIA 78

Query: 61  AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEED 119
           AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEED
Sbjct: 79  AACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEED 138

[Close]

BLAST of Chy1G015280 vs. NCBI nr
Match: XP_008451280.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo])

HSP 1 Score: 219 bits (559), Expect = 1.87e-71
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 4   LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA 63
           L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA
Sbjct: 23  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA 82

Query: 64  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 119
           MALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 83  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Chy1G015280 vs. NCBI nr
Match: KAA0059706.1 (photosystem II reaction center W protein [Cucumis melo var. makuwa] >TYK26144.1 photosystem II reaction center W protein [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (551), Expect = 3.11e-70
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 4   LQSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLGMGASLIAAACAATMSSPA 63
           L SASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNL MGASLIAAACAATMSSPA
Sbjct: 23  LPSASPAPFLLGLPALGKKGGVRCSMEGKGNGEVENKSSNLEMGASLIAAACAATMSSPA 82

Query: 64  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 119
           MALVDERLSTEGTGLPFGLSNNLLGWILLGVF LIWAFYIVYTSTLEEDEESGLSL
Sbjct: 83  MALVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWAFYIVYTSTLEEDEESGLSL 138

[Close]

BLAST of Chy1G015280 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-33
Identity = 77/109 (70.64%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 13  LLGLPALG-KKGGVRCSMEGKGNGEVENKSSNLGMGASLIA-AACAATMSSPAMALVDER 72
           +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MS+PAMALVDER
Sbjct: 30  VLGLPPMGKKKGGVRCSMETK-----QGNVSVMGAGVSAAATAALTAVMSNPAMALVDER 89

Query: 73  LSTEGTGLPFGLSNNLLGWILLGVFALIWAFYIVYTSTLEEDEESGLSL 120
           +STEGTGLPFGLSNNLLGWIL GVF LIW F+ VYTS+LEEDEESGLSL
Sbjct: 90  MSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of Chy1G015280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41387	3.6e-34	65.55	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q39194	5.8e-32	70.64	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q5ZBY9	1.6e-21	58.10	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.4e-09	40.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of Chy1G015280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4V6	5.4e-57	99.16	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_7G378440 PE=3 SV=1	[more]
A0A1S3BQI5	1.1e-54	98.28	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492626 PE=3 SV=1	[more]
A0A5D3DRC0	9.6e-54	97.41	PSII 6.1 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111...	[more]
A0A6J1GQI7	7.6e-51	89.08	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111456564 PE=3 SV=1	[more]
A0A6J1H5C6	4.9e-50	88.24	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111460641 PE=3 SV=1	[more]

BLAST of Chy1G015280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146953.1	1.62e-74	99.16	photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sati...	[more]
XP_038900227.1	8.98e-72	95.80	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_031745255.1	1.66e-71	92.91	photosystem II reaction center W protein, chloroplastic isoform X1 [Cucumis sati...	[more]
XP_008451280.1	1.87e-71	98.28	PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis...	[more]
KAA0059706.1	3.11e-70	97.41	photosystem II reaction center W protein [Cucumis melo var. makuwa] >TYK26144.1 ...	[more]

BLAST of Chy1G015280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	4.1e-33	70.64	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 10..119 e-value: 1.9E-52 score: 176.8
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 11..119
None	No IPR available	PANTHER	PTHR34552:SF9	PHOTOSYSTEM II REACTION CENTER W	coord: 11..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G015280.1	Chy1G015280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast