Chy1G013740 (gene) Cucumber (hystrix) v1

Overview
NameChy1G013740
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
LocationchrH01: 18568893 .. 18576716 (-)
RNA-Seq ExpressionChy1G013740
SyntenyChy1G013740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCACAAGAAATTGTCGCTGTTGTATTTCCCTTCACAATCACCCAACGACAGATGCTCCTGATATTGGAGGCACTGTTGAATGACCACAAGCGTACAACTCACATACAGCCGACACTAGACATAGGATTAGGCACCTAGCCTACTTCACCATAATACACGCGTCTGACCTTGTGTGTTGGCAAAGTACGTAGATGGGAAGACGTTTCGCAATTATGTTCCATCTATTATGAACAAGGGCCGACTTAGAATCGACGGAACTTGTCGATATTGAGGAGATGGTCGCCATCTTCCTTCATGTGCTGGCGCACGATGTAAAGAACCGACAGATCCAAAGGGAGTTGTAAGGTCCGGTGAGACAGTTTTTCGACATTTCAACATTGTCTTAATAGCCGTTCTTCGTTTGCATAACGAGTTATTGGTTACACCACAGTCTATAGCGAGCACATGCCAGATTTGAGGTGGCAATCTTTCGAGATTAGGGCTAAACAACTTATCGTTTCTTTTTAACTTTTCTATTGAAACTTGTCGAACCTAAAAACCTTCGTTTGATATTCGCTGCAGAATTGCCTAAGGGCATTAGACACACATACATCAAAGTTAACGTGTCCGTAGCTGATCGACCAAGGTATCAAACATGAAAGGGAGAAGTGTTAATGAATGTCCTCGACGTATGCGATACGAAGGGGGACTTCATTTTCGTTTTAGTTGGCTGGAAAGGATCTGCAGTGGACTCGCGTATCCTATGGGATGCAATTTTTTGACCTAACGGTTTGAAGGTTCTGAAGGGTAAGATATATGTTCCCAATAACCCTAGTTAAAATAGTTTGGAATTTGTCAATTCTTTCTTGGTTTAACGCCTTAGCATAATGGAACCTCATATTCCCAGGGTTTTACTACCTGTGCTCACGGGATACCCAAATGCAGAGAGTTTTCTAGCTCTGTTTAGGGGGCAACATTATCATCTATAGGAGTGGTGTGGTGCTGAAAATGCTCCAACAACACTAAAGAAGTTCTTCACCATGAAACATTCTTTTGTCCAAAATGTGATTGAAAAAGCGTTTGACTTGTTGAAGGGACGTTGGGCGATACTACGTGAAAAATCCCACTACCTGGTTCAAGTCTAATGTTAGACTATTATGGCTTGTTGTCTCCTTCATAATTTAATAAATTGGGAGATGACGAACGCCGACATATTGGATGATGAAGATGAGAGTGACTCGACAAACGTAACTACTAGTGATGATGATATCACATACATTGAGGCCGCAAACGAATGGAATCAATGGTGGGATGCACTTGCTTCGTTGATGTTCAACGAATGGAAATTGCGTAATGAGTAGTAACGCTTGATTTATAGTACAACCCCGTTATTGAAACAGTTCTAGGATGTGTATTTCCCTATTTCTTTGTTGTCCTCCTATTTTGTATAATGAGACTTGGTTTAAAAAAAGTTTGTCCTTCATGTTTACTTATCTTAATGTTTTGTCGGTTTATATGTTTATATGTTTATATGTTTTTTGTTTCATACAATACTTGTAATGATTCAATTTTTTTATCAGAATGGCCAGTTCATCAAGGAACCCAAAGCATTCTTGGATACAGGCAGAGGAGGCATGCTTAGTAGACTGCCTTGTGGACTTGGTTAACGCGGAGGGGTGGAGGTTGGACAACGGGACTTTCCGCTCTAGTTATTTAGCACAACTGGTCAAGATGTTAGGAGAAAGAATGCCCGACTGCGGTTTGATAACCACCATCATCGAAAGCTGAATAAAATTATTGAAAAAGATGTTTCAGGCCATTATCGAGATGAGGGGCCTAGCAGGTAGTGACTTCGGCTGAAACGATGACGTCAAGTGCATCATCGTTGAGAGGGACGTGTTCAAAAATTGGGCCTAGATAAGATTATGAACTTAATTATATGATCAACGAGGTGTATTGAAATACTAAACGCTTTGTTTTTTCCTTGTGAATCTGTTAGACGCATCCTGCAGCAAAAGGACTCTTGAAAAAGCCTTTCCCACATTATGACGAGTTGTCGTACTTGTTTGGGAAAGACCGCAGGACAGGAGCCCGTATGGAGACATTCACAGACATCAGGTCTAGCGACGCTAGGTCGAGATCTAGTAGTCAGAAAAGTGTCAGGACCTTGCGACGGTATCCCCGCAGAGGATGACTTGGAGACGGAGTTCTTGGGTATGTGCAGCCCGAGGATGAACATGTCACTAGATGACATAATGGCTGATCGATCTAGTGGGTCTAACGACGTTAGGTTAGGATCCAGCAGTCAGAAAAAAGTGCAACATGCAGAAGTTCGAGACTTACGACCTGATTCAAGATTGCATGGACGCTGTGACTGATCAGCTTAGAACCATTGCAGAATTGGCCTAATAAAGCCATCAATCGAAAGGACGTGATGGTGGAGGAGGTCATTACGTATATGAAGTCCATCTCGACCTTACAATTAAGGACATCCGTAAATGCGTGATGATAGTGATTGAGAAGGTGTTGTTGGGATTTATTTCCTAAAACTCATATATTGTAAATATAATTAATTGACCGTTGTGAATAAAGTGTTATTGTTGTAATAATTGTTATTGATTATATTATTAGTTTTCTTTTAATAACCCAAAATCCAATAAACTAACATCCTAAGTTGTTTAATGAGTCTTGAACAGTATGTAGAGACATACATGGATCAATGTTCGAGATCAGCTTAAAGGGTCTATAGTATAGGAAAAAGGCTGGGTACCTTATCCTGTTAGCACTATGGATACGACTCACTTTGTATTTGATACAAACGCAATGATCTAACCCATTCGTGTAGTTGACATGCGAGTGAGGGTATCCTATGCAATGAGTTTGCATAAGACCAGACCGCGAAATAGTAATCACTAGATGTAACTCCATTAACTAGTTAGGTTTCTATTCTATTAGGATGACCTAGGTAACTTAGTCTTAATCCTGAGTGTATTATGAAATCCTGTTCGCGAGGGATTGTCCTTTAATTTGTACGAGTGAGAGTGGTCAGATCGCCGACTCAATAAGCATATCATTTTGTAGACAAGATCGAGTGGAGAGCTGGGAACATAATTACACAAGATAGAAGTCACTCATTCCCTACTTTAGGGTAAGTAGATAAGTGTTCTCTTAAATGGTGTCTCCAGGAATTGAACAAAAGAGCCTACCCTCTCTATGGCACGAAAGGGGTATATGTTTATTGGTAGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGATATTTAAGGGCTAGAGGTAATCTAGGGGTAAAACGATAATTTGACCTAGCTGGTGTTACGAACACTCGTGAAGGACTAACGTACTGTTATTGGTCTATATCCGTGGACACATAAATATATCTACAGTGAGAAAGAGTTCAACTGTGAGTCTTTAGTGGAGTGCACACACAGTTAATGAATATTGATTAATGTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTGTAGATTTTGATCTGTAGGTCCATTAGGTCCCATTCCTAGGTCATAAAAGGTAATGAGATTTATTTATATTGGTTGTAATTTGAAATGTTCAAAATTACTTTGAGAATTAGTTTAATGTATAGTGATACATTATAATATAAAATTTATCAAACTTTATTATATCAATTTAATTTTGGATATTATTCAAAATTAATTTATGAGAAATAAAATATTTGAATAAGTTCAAATATTAATTTAATGTGAATTGGAGTTGTATTAAAATTATTGGTTATAAGAGAAACTTATATTTCAATATGGGATGATAGTTAATCTCTAAACCTATTCTTTTGTTCTTTATTCCCTCTAATCTTTTCTTTTGTCCTAGTTCTTAACTAATATTCATCAATCGATCTAATTTTAAGAGAAAATAGAAGTTAATTACTCTAAATTCATTTACCGATTTTGTTCAAAGTTTGCAGGTTGACCAAGCCATACTCAAACTTGCAAGAACAAAAGAATAGGTTTAGAGATTAACTATCATCCTTCCCGGATTCAGAGAGTAGTTTACTCCATGAGAGAGAAACAAAGAATAAGAGAAAAGAAGTGATCTCTATGGCTCTGATACCATTTAGGGATGAGGGACGTGCCCTTATATAGATAAACAAATCTCTCGCCGAGATATCATTTATCCATACAGGTTAATACACGTGTCGTCAATAATTATACAAATTGGAGAAAGACAAAGAGAGTGGCCGACAGAACAGGACCCCTGACTGGCATCTTATCTCTTCAGAATCTTTCTTTTTGAAAAGTAAAAGATTACGATAAGATTTGGGTGGGATAGGACCCCCACTTATCCTTATCTTCTCGTAATAATTACAAAACGACAAAAACATAAAGTAAAGTAAACATAATTACTAAACATAATAATTACAAAATGACAAAAACTTAAAGTAAAGCGGAAAAGATATGTCTGCAGCTGTCCTCGAGTCTATCTTCGTTATTTCTTCTTTCTTGGTGGTGATGTCACCCGATTTTGTCTGAATGGCCATGATTGCGCTTACCAAGCGACTATTGTTGATTTGTTGATAAGAAAATACATCCAGGGACTTACTCTCGGCTACCCCGCCTTTCACTGCCCAAGCATCCTCTTCTCTCTAGATCGGTAGGTCGCGGTAAGCATTCCTAACCGAAATCAATCGCTGCTGAAAAGCACTGGCCTGTGGTTGGTCATTCCACTTCAGTCACCTACCATCAACATCACCTCCCCTTCAATCGGAGATCACACAATCGACGATTACCTGTTGCAGACTGGATATACTGGACTTTATTTATAGGACACTAAAAAGATTTTTTTTTTTTTTTTTTACAAAATTAAAATCAAAACATAAAACTGAAACTAATACCTACAACTAAAACTAAAACCTATTGTTCATTCCGGTTGGGAATCCAAATAGGGATCTAATACATCGTAACCTGAATACGGATCGTAGTCAAGTTCGATGTCATTGACAGATGAATTTGAAGAGATGTCGTCATTGTCTTCAATTTTATCTTGTTTGTCGTCATCCGAAATGGTGTGGATGACTGTTTCCATGATCGTCTTTAGATCCGCTTCCGATCTGGCACCAGCAAGAGAGGTCATAATTGAGTTCTTTGGGAGAAGGAACTGGTCTTCTTCTTCTCGTGAAAGATGAGCGTTGGTCTTGAACCAATTCGCTATTTGATCCTTGTTGAGATGGGAATGGTCGTACTTGTCCCACCATTTGACGCGCAAGATCTTTCCTAAGATCTTGAACTTCGCTCTGGTTGAAAGCTGATGACTCCAGCAGAAGATTCAGGGCACTTGAAAGTAAAGCTAGAATCTATACGTCGGTGAGAGAGCAGACGAATAGATACTATTTGAAAACTGATGGTATGCCTGTTGAACTTGTAGAGGGAAAATTTTCGGAGTAAGTCCAAAATAACTCCACCATCGTTGGAATGAATTCGAAAAATTACATTTGTAAGATTTCTTACAGAACGTAATAAACCAAGAGTGGTTATTGGAATCGTACCAGAATACCTTATACCATGCTTCCATGTAGTCACAGTATGTGTATGCTGGTGGATTGAATGGCTTGGAAAACTTTCAGGGGACAAGCATCCCTTGTGGCCAGTGGGACGGAGTTAGAACCCTGAAATTTTTTAGCTTGGAATAGACAATTTTTTCCGGGTTGTTTCGGTCCGAAATATGAGTTATCTCAACATAAACGGTATCCACCAAGATGAATTCTTAAAATTGTCTAGTCTTCTTGATGTCTTCAGGCAAGAAATTGAACCCTTTAGGATAGACTTGGGAACTAATTTCTTAGACGGAAGGTCCATCGAATTCTGGTTCAATAACAACTTCTTCCAGAATTGTTTTGGTGAGGTATCCTGTGATCGGAGGTCTAGGCATGAAGATTGCCGGTTTTACCGTCCGTGCATAGGATTGAGGTTTGGATTGGGACTTTGTCGATGTGGAAATGGGTCGAAGCAAAGTGTTTGAAGGAGCTGAGGTTGATCCTATTGAAAGATTCCTTGAAGAGGAACTTGGACGACGCCTAGTCGTAGTTATCTGCGTTCATCGGTGACGGAGCAGATGATTGAGACATAGGGCGTTTTCCCTTGGAGGAGCTTGCTGTTTGGGAGAAAGCCGGGTTAGGCTGATTTGGATTGTTTGGAGGCTGAGGCCTCTCGGGTGGCCGAGGTCGGCCAGAATTGGGGAGCATTGGGAGGATTGGCAGGAGTCTTCAAGAGAGAGGATTTAGAGAGATGCTCTCTCGAGAGGTAATCTGCAAGGCAATTCTCACTGTCTTTTATAGGCTCGATTGTGAAATCAAAGCAAGATAAGATTGCTCGCCACCTTGCAAAGATTTGCTTGGAAACCATATTTTTTACGTCTTTTTCAAAGATGTATTTACTGGCTTTCGAATAAGTTCTGACAAGAAAATCCTTGTTGATAAGATCTCCTTGGAACTTCTGAACGGATAGTACAATTGCGAGAACTTCCTTCTTGACGATGGAATAGTTTCTTTGAGCACTATTCCAGACACCAGAGTGGAAACGGACAAGAGATTCCTTGCCGTTAATTCTCTGTTTGAGACAACCGCCGAAACCTTTATCCGAGGCATCGGTTTCGACGATCATTTTGGCTTTCTCATCCACTAAAGAAAGGCATGGGATTCCTTTTGCTAGGGATTTGATTGATTGGACTGCTCGGGTGTGCTCAGCCGTCCACGGGTTTGGCTTCTTCTTCAGTCTGTCATAGAGGGGCAGACAAATTTTCTGTAGATCTTTGATGAAGTCGCCGATGTAGTTGACACATCCAAGAAAGCGCTGTAGTTGGGTCTTATCCTGGATTTCATCTGGAAACTTATCCACAAAATCAAGGGATCTTTGGATAGGCTTGACAATTCCTTGGTCGATATCAAATCCTAAAAATCTGATACTAGTTTGGAATAATTTAATCTTTGGTTCAGAAACCACAAGGCCATTTGTTTTGACGATATTGATAAACAAATTAATATGCTTAAAATGTTGATTAATGTTTTCCGAGAATATCAGGACATCATCAATATAGACGATAGTGAAATCTTGATACTTATTGAAAATGTCATTCATGATCTTTTGAAACTCGGAAGGAGCATTCTTAAGACCAAATGGCATTACATTCCATTCGTACTGTCCGAAAGGAACGTTGAAGGCAGTCTTGTACCTGTCCTTTGGGTTGATCTGAATCTGCCAAAAACCAGACTTCATATCAAACTTTGAAAAGACCTTTACGTTGGCGATCCGCTTGAGCAAGTCTTGACGATTAGGAATTGGATACCTAATCCACTTGAGAACCTTGTTTAGGGACTTGTAATTGATGACTAGACGGGGAACACCTCTTTCCTTTTCTGCCTGATTGTTGACGTAGAATGCCGCACAAGACCATGGGCTCTTTGATGGGCTTATTAAACCTTTCTTCTGGAGATCTGCTATCTCTTTGAAGCAGGTGTTGACTAAGTCCTTACTCATTTGAATGGGCCTTGCCTTTGTAGGAATTTGGGCCTCTTTGAAGTTGTCCACATAGGGTAGGTCTACCATATGTTTCTTCCTGGCCCAGAAGGCATTGGGCAGACTCGAACAAATCTCGAATCCTATTCTTTGTAGAATGGACTGGATTTTCAATTGAATAGAAGGCTTCTTGATTTCTTCGCTGATCTTCCTTCCTTTGATGTCATGGTGAAGAAACTCAATCTGCTTTTCTTTCCTTGAAATAAGATTGAGACTTTGAATGATCTCGCTCTCAATTGTCGAAAGATACCTTTGAATTATCGGTTTGC

mRNA sequence

ATGGACCCACAAGAAATTGTCGCTGTTGTATTTCCCTTCACAATCACCCAACGACAGATGCTCCTGATATTGGAGGCACTGTTGAATGACCACAAGCGTACAACTCACATACAGGCCGACTTAGAATCGACGGAACTTGTCGATATTGAGGAGATGGTCGCCATCTTCCTTCATAATTGCCTAAGGGCATTAGACACACATACATCAAAGTTAACGTGTCCGTAGCTGATCGACCAAGGTATCAAACATGAAAGGGAGAAGTGTTAATGAATGTCCTCGACGTATGCGATACGAAGGGGGACTTCATTTTCGTTTTAGTTGGCTGGAAAGGATCTGCAGTGGACTCGCTGACTCGACAAACAATGGCCAGTTCATCAAGGAACCCAAAGCATTCTTGGATACAGGCAGAGGAGGCATGCTTAGTAGACTGCCTTGTGGACTTGGTTAACGCGGAGGGGTGGAGGTTGGACAACGGGACTTTCCGCTCTAGTTATTTAGCACAACTGGTCAAGATGTTAGGAGAAAGAATGCCCGACTGCGGTTTGATAACCACCATCATCGAAAGCTGAATAAAATTATTGAAAAAGATGTTTCAGGCCATTATCGAGATGAGGGGCCTAGCAGGTAGTGACTTCGGCTGAAACGATGACGTCAAGTGCATCATCGTTGAGAGGGACGTGTTCAAAAATTGGGCCTAGACGCATCCTGCAGCAAAAGGACTCTTGAAAAAGCCTTTCCCACATTATGACGAGTTGTCGTACTTGTTTGGGAAAGACCGCAGGACAGGAGCCCGTATGGAGACCTTTGAATTATCGGTTTGC

Coding sequence (CDS)

ATGGACCCACAAGAAATTGTCGCTGTTGTATTTCCCTTCACAATCACCCAACGACAGATGCTCCTGATATTGGAGGCACTGTTGAATGACCACAAGCGTACAACTCACATACAGGCCGACTTAGAATCGACGGAACTTGTCGATATTGAGGAGATGGTCGCCATCTTCCTTCATAATTGCCTAAGGGCATTAGACACACATACATCAAAGTTAACGTGTCCGTAGCTGATCGACCAAGGTATCAAACATGAAAGGGAGAAGTGTTAATGAATGTCCTCGACGTATGCGATACGAAGGGGGACTTCATTTTCGTTTTAGTTGGCTGGAAAGGATCTGCAGTGGACTCGCTGACTCGACAAACAATGGCCAGTTCATCAAGGAACCCAAAGCATTCTTGGATACAGGCAGAGGAGGCATGCTTAGTAGACTGCCTTGTGGACTTGGTTAACGCGGAGGGGTGGAGGTTGGACAACGGGACTTTCCGCTCTAGTTATTTAGCACAACTGGTCAAGATGTTAGGAGAAAGAATGCCCGACTGCGGTTTGATAACCACCATCATCGAAAGCTGAATAAAATTATTGAAAAAGATGTTTCAGGCCATTATCGAGATGAGGGGCCTAGCAGGTAGTGACTTCGGCTGAAACGATGACGTCAAGTGCATCATCGTTGAGAGGGACGTGTTCAAAAATTGGGCCTAGACGCATCCTGCAGCAAAAGGACTCTTGAAAAAGCCTTTCCCACATTATGACGAGTTGTCGTACTTGTTTGGGAAAGACCGCAGGACAGGAGCCCGTATGGAGACCTTTGAATTATCGGTTTGC

Protein sequence

MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQADLESTELVDIEEMVAIFLHNCLRALDTHTSKLTCP*LIDQGIKHEREKC**MSSTYAIRRGTSFSF*LAGKDLQWTR*LDKQWPVHQGTQSILGYRQRRHA**TALWTWLTRRGGGWTTGLSALVI*HNWSRC*EKECPTAV**PPSSKAE*NY*KRCFRPLSR*GA*QVVTSAETMTSSASSLRGTCSKIGPRRILQQKDS*KSLSHIMTSCRTCLGKTAGQEPVWRPLNYRFX
Homology
[Close]
BLAST of Chy1G013740 vs. ExPASy TrEMBL
Match: A0A5D3DV28 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00940 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-10
Identity = 43/69 (62.32%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHI-----------QADLESTELVDI 59
          MDP EIV VV  FTI QRQM LILEALL+D+K  THI             DLESTE VD+
Sbjct: 1  MDPHEIVVVVSAFTIAQRQMFLILEALLHDNKHITHIPTDVRHKIRQLTVDLESTEHVDV 60

[Close]
BLAST of Chy1G013740 vs. ExPASy TrEMBL
Match: A0A5D3BGQ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00140 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 50/119 (42.02%), Postives = 56/119 (47.06%), Query Frame = 0 

Query: 1   MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQAD-------------------- 60
           MDPQEI AVV  FTITQRQMLLILEALLND+KR THI  D                    
Sbjct: 1   MDPQEIAAVVSAFTITQRQMLLILEALLNDNKRITHISTDTRHWIRHLTYFRMIHAPDLV 60

Query: 61  ------------------------LESTELVDIEEMVAIFLH----------NCLRALD 66
                                   LEST+ VD+EEMV +FL+          NCL AL+
Sbjct: 61  CRESTRTDRCCFAIICHLLRTRVRLESTKHVDVEEMVTLFLYVLTHNVKNQQNCLEALN 119

[Close]
BLAST of Chy1G013740 vs. ExPASy TrEMBL
Match: A0A5A7U3X6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002670 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-06
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQADL-ESTELVDIEEMVAIFLHN 60
          MDP EI AV+  FTI QRQMLLILEALL+D+KR THI  D       +    M+     N
Sbjct: 1  MDPHEIAAVLSAFTIAQRQMLLILEALLHDNKRITHIPVDAGHRIRQLTYFRMIHASDLN 60

Query: 61 CLRALD 66
          CLRALD
Sbjct: 61 CLRALD 66

[Close]
BLAST of Chy1G013740 vs. ExPASy TrEMBL
Match: A0A5D3BBK6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00580 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-05
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHK-------------RTTHIQADLESTELV 59
          MD Q ++ V+  FT+TQRQMLL LEAL+N++K             R   I A L ST++V
Sbjct: 1  MDQQTLLGVLTTFTMTQRQMLLTLEALMNENKHLPQTSYDTRHRIRQLAIVAGLSSTKIV 60

[Close]
BLAST of Chy1G013740 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQ--------------------AD 59
          MD  E+ ++V  F  +QRQ+LL+LE L ND KR THI                     A 
Sbjct: 1  MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGTIAG 60

[Close]
BLAST of Chy1G013740 vs. NCBI nr
Match: KAA0037840.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.53e-10
Identity = 43/69 (62.32%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQAD-----------LESTELVDI 58
          MDP EIV VV  FTI QRQM LILEALL+D+K  THI  D           LESTE VD+
Sbjct: 1  MDPHEIVVVVSAFTIAQRQMFLILEALLHDNKHITHIPTDVRHKIRQLTVDLESTEHVDV 60

[Close]
BLAST of Chy1G013740 vs. NCBI nr
Match: KAA0066270.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97655.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.14e-08
Identity = 50/119 (42.02%), Postives = 56/119 (47.06%), Query Frame = 0 

Query: 1   MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQAD-------------------- 60
           MDPQEI AVV  FTITQRQMLLILEALLND+KR THI  D                    
Sbjct: 1   MDPQEIAAVVSAFTITQRQMLLILEALLNDNKRITHISTDTRHWIRHLTYFRMIHAPDLV 60

Query: 61  ------------------------LESTELVDIEEMVAIFLH----------NCLRALD 65
                                   LEST+ VD+EEMV +FL+          NCL AL+
Sbjct: 61  CRESTRTDRCCFAIICHLLRTRVRLESTKHVDVEEMVTLFLYVLTHNVKNQQNCLEALN 119

[Close]
BLAST of Chy1G013740 vs. NCBI nr
Match: KAA0048149.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08105.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 7.06e-06
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQADL-ESTELVDIEEMVAIFLHN 60
          MDP EI AV+  FTI QRQMLLILEALL+D+KR THI  D       +    M+     N
Sbjct: 1  MDPHEIAAVLSAFTIAQRQMLLILEALLHDNKRITHIPVDAGHRIRQLTYFRMIHASDLN 60

Query: 61 CLRALD 65
          CLRALD
Sbjct: 61 CLRALD 66

[Close]
BLAST of Chy1G013740 vs. NCBI nr
Match: KAA0045061.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96266.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.79e-05
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKR-------TTH------IQADLESTELV 58
          MD Q ++ V+  FT+TQRQMLL LEAL+N++K        T H      I A L ST++V
Sbjct: 1  MDQQTLLGVLTTFTMTQRQMLLTLEALMNENKHLPQTSYDTRHRIRQLAIVAGLSSTKIV 60

[Close]
BLAST of Chy1G013740 vs. NCBI nr
Match: KAA0033883.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01267.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 2.28e-04
Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 0 

Query: 1  MDPQEIVAVVFPFTITQRQMLLILEALLNDHKRTTHIQAD-----------------LES 60
          MDPQ ++ V+  FT  QRQMLL LE L+ND+KR  +   D                 + S
Sbjct: 1  MDPQSLLGVLTAFTRVQRQMLLTLEVLVNDNKRLPYASYDTRRTFAILCHLLRTIIGISS 60

Query: 61 TELVDIEEMVAIFLHNCLRALDTH 67
           E+VD+EEMV +FLH     +  H
Sbjct: 61 IEIVDVEEMVVMFLHILAHDVKNH 84

The following BLAST results are available for this feature:
BLAST of Chy1G013740 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G013740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DV288.7e-1062.32Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BGQ43.7e-0842.02Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3X67.6e-0656.06Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3BBK62.9e-0549.30Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GCB51.9e-0444.87Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
BLAST of Chy1G013740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037840.13.53e-1062.32retrotransposon protein [Cucumis melo var. makuwa] >TYK27219.1 retrotransposon p... [more]
KAA0066270.12.14e-0842.02retrotransposon protein [Cucumis melo var. makuwa] >TYJ97655.1 retrotransposon p... [more]
KAA0048149.17.06e-0656.06putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08105.1 putative nucleas... [more]
KAA0045061.12.79e-0550.70retrotransposon protein [Cucumis melo var. makuwa] >TYJ96266.1 retrotransposon p... [more]
KAA0033883.12.28e-0439.29putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK01267.1 putative nucleas... [more]
BLAST of Chy1G013740 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G013740.1Chy1G013740.1mRNA