Chy1G013400 (gene) Cucumber (hystrix) v1

Overview
NameChy1G013400
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSignal sequence receptor subunit alpha
LocationchrH01: 17525064 .. 17525798 (+)
RNA-Seq ExpressionChy1G013400
SyntenyChy1G013400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTTGCAACTCTTTATTGGGAATGAAGTGCGCAATGCAAAGCATGATCAAGCACACTTGTTTCTTTTGCCTGGGAAGGTGATGTCTCAAAACTATATAAATTTAGATTGGGGTCCTATTACTTTAGTTTTTTTTTGTTGAACTGCTTGATGTCAACGCTCTGTATCTACTCATGCCAATTTCTGAATTTTAGACCGAGAGTTGTCTTAAGTAGTTTGTGTTCGAACTGCTTTGTACTTTTACATATTTGGGCATCATTGGAGGAGCTAATGTTCTTTGTACTTTATAGAGATGTTTTGATAATTTTTATATTTGGAACATAGTATTTTTTATATTTTTATGTTTATGGACTTGGGATGTGGATATGAATTATGATAATCCATCCTTGTTGTGCTTCCACAAATAAAAAAAAGGAAAAAAAGAAAGAAAAAAAAAGGCAATTCATCCTTGTTGCAAAAAATGACTAAGAAAATCTACTTTCATTTATCCATTTTCTTTTAATTGCTGGCTTTAGGTTGTTCTTTTGTTAAAGTTGTTATCCATCTTTCGCTATGTGATGGATATGTATCTATATACTTCAATTCATGTGATGTGATGTATTCGTGCTTTGTTGTTGTTAGATGTCAATTGGATGCGGAGACGGAATTTGAAGAGGTTGTTGTTGATGATGCCACTGACTTGGGGATTGTTGGGGAGGAGGAACTAGATTGTTGCTACTGTCAAATTCTAA

mRNA sequence

ATGGCAGCTTGCAACTCTTTATTGGGAATGAAGTGCGCAATGCAAAGCATGATCAAGCACACTTGTTTCTTTTGCCTGGGAAGATGTCAATTGGATGCGGAGACGGAATTTGAAGAGGTTGTTGTTGATGATGCCACTGACTTGGGGATTGTTGGGGAGGAGGAACTAGATTGTTGCTACTGTCAAATTCTAA

Coding sequence (CDS)

ATGGCAGCTTGCAACTCTTTATTGGGAATGAAGTGCGCAATGCAAAGCATGATCAAGCACACTTGTTTCTTTTGCCTGGGAAGATGTCAATTGGATGCGGAGACGGAATTTGAAGAGGTTGTTGTTGATGATGCCACTGACTTGGGGATTGTTGGGGAGGAGGAACTAGATTGTTGCTACTGTCAAATTCTAA

Protein sequence

MAACNSLLGMKCAMQSMIKHTCFFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELDCCYCQILX
Homology
[Close]
BLAST of Chy1G013400 vs. ExPASy TrEMBL
Match: A0A5A7TU84 (Signal sequence receptor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001580 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 23 FFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELD 58
          F  + RCQ DAETE EE VVDDATDLGIVGEEELD
Sbjct: 20 FLQVVRCQSDAETESEEAVVDDATDLGIVGEEELD 54

[Close]
BLAST of Chy1G013400 vs. ExPASy TrEMBL
Match: A0A1S3C642 (Signal sequence receptor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103497301 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 23 FFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELD 58
          F  + RCQ DAETE EE VVDDATDLGIVGEEELD
Sbjct: 20 FLQVVRCQSDAETESEEAVVDDATDLGIVGEEELD 54

[Close]
BLAST of Chy1G013400 vs. ExPASy TrEMBL
Match: A0A0A0LJC2 (Signal sequence receptor subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_2G263930 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.9e-04
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 23 FFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELD 58
          F  + RCQ DAE+E EE  VDDATDLGIVGEEELD
Sbjct: 20 FLQVVRCQSDAESESEEAAVDDATDLGIVGEEELD 54

[Close]
BLAST of Chy1G013400 vs. NCBI nr
Match: XP_008457651.1 (PREDICTED: translocon-associated protein subunit alpha [Cucumis melo] >KAA0045696.1 translocon-associated protein subunit alpha [Cucumis melo var. makuwa] >TYJ99586.1 translocon-associated protein subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.53e-07
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 23 FFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELD 57
          F  + RCQ DAETE EE VVDDATDLGIVGEEELD
Sbjct: 20 FLQVVRCQSDAETESEEAVVDDATDLGIVGEEELD 54

[Close]
BLAST of Chy1G013400 vs. NCBI nr
Match: XP_004147020.1 (translocon-associated protein subunit alpha [Cucumis sativus] >KGN61898.1 hypothetical protein Csa_006583 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 2.04e-06
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 23 FFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELD 57
          F  + RCQ DAE+E EE  VDDATDLGIVGEEELD
Sbjct: 20 FLQVVRCQSDAESESEEAAVDDATDLGIVGEEELD 54

[Close]
BLAST of Chy1G013400 vs. NCBI nr
Match: XP_038902527.1 (translocon-associated protein subunit alpha [Benincasa hispida])

HSP 1 Score: 50.1 bits (118), Expect = 5.06e-05
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 23 FFCLGRCQLDAETEFEEVVVDDATDLGIVGEEELD 57
          F  + RCQ DA+ E E+  VDDATDLGIVGE+ELD
Sbjct: 20 FLQVVRCQSDADVESEDAAVDDATDLGIVGEDELD 54

The following BLAST results are available for this feature:
BLAST of Chy1G013400 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G013400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TU845.8e-0580.00Signal sequence receptor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3C6425.8e-0580.00Signal sequence receptor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103497301 P... [more]
A0A0A0LJC24.9e-0474.29Signal sequence receptor subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_2G26393... [more]
BLAST of Chy1G013400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008457651.11.53e-0780.00PREDICTED: translocon-associated protein subunit alpha [Cucumis melo] >KAA004569... [more]
XP_004147020.12.04e-0674.29translocon-associated protein subunit alpha [Cucumis sativus] >KGN61898.1 hypoth... [more]
XP_038902527.15.06e-0565.71translocon-associated protein subunit alpha [Benincasa hispida][more]
BLAST of Chy1G013400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G013400.1Chy1G013400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane