Chy1G012450 (gene) Cucumber (hystrix) v1

Overview
NameChy1G012450
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 15374530 .. 15374964 (-)
RNA-Seq ExpressionChy1G012450
SyntenyChy1G012450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACACGTGGCAGTGTTATAATAATGTTATAGTAGAAGATTATGATAATTGCAGTAGTGTTGAAATGGGTATCAAGTGATCCTGATGCGACGAACGGATCGATACAGAATCAAGATGTGATAAATAGGTCGATACGATATCAAGAACAATCCAACATGTTTGGAGAACAATCTAATGCTTTAGGTCATATTGTTGGAAATAGTACTTGTCGGACTCAATCCAATCCTAGAAAGATATCTTCTAGTAGTGCTGCAAGCCATGAGGACTTGATAATCCAATTGTTTGTTGGATCACCGTTGGACACAAATGTTAAAAAGGGACAAATCTTCTTTAGTAAAAGTGATGTAAGATGAGACTCTCCTTGAGTACCTATATAGTTTGTGGTGTATCCATCCTTCTTGGAAATGGGTTGTTTGTTCAACTAAAATGA

mRNA sequence

ATGGAAAACACGTGGCAGTGTTATAATAATGTTATAGTAGAAGATTATGATAATTGCAGTAGTGTTGAAATGGGTATCAAGTGATCCTGATGCGACGAACGGATCGATACAGAATCAAGATGTGATAAATAGGTCGATACGATATCAAGAACAATCCAACATGTTTGGAGAACAATCTAATGCTTTAGGTCATATTGTTGGAAATAGTACTTGTCGGACTCAATCCAATCCTAGAAAGATATCTTCTAGTAGTGCTGCAAGCCATGAGGACTTGATAATCCAATTGTTTGTTGGATCACCGTTGGACACAAATGTTAAAAAGGGACAAATCTTCTTTAGTAAAAGTGATGTAAGATGAGACTCTCCTTGAGTACCTATATAGTTTGTGGTGTATCCATCCTTCTTGGAAATGGGTTGTTTGTTCAACTAAAATGA

Coding sequence (CDS)

ATGGAAAACACGTGGCAGTGTTATAATAATGTTATAGTAGAAGATTATGATAATTGCAGTAGTGTTGAAATGGGTATCAAGTGATCCTGATGCGACGAACGGATCGATACAGAATCAAGATGTGATAAATAGGTCGATACGATATCAAGAACAATCCAACATGTTTGGAGAACAATCTAATGCTTTAGGTCATATTGTTGGAAATAGTACTTGTCGGACTCAATCCAATCCTAGAAAGATATCTTCTAGTAGTGCTGCAAGCCATGAGGACTTGATAATCCAATTGTTTGTTGGATCACCGTTGGACACAAATGTTAAAAAGGGACAAATCTTCTTTAGTAAAAGTGATGTAAGATGAGACTCTCCTTGAGTACCTATATAGTTTGTGGTGTATCCATCCTTCTTGGAAATGGGTTGTTTGTTCAACTAAAATGA

Protein sequence

MENTWQCYNNVIVEDYDNCSSVEMGIK*S*CDERIDTESRCDK*VDTISRTIQHVWRTI*CFRSYCWK*YLSDSIQS*KDIF**CCKP*GLDNPIVCWITVGHKC*KGTNLL**K*CKMRLSLSTYIVCGVSILLGNGLFVQLK*
Homology
[Close]
BLAST of Chy1G012450 vs. ExPASy TrEMBL
Match: A0A0A0K9M4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G313940 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 59/161 (36.65%), Postives = 69/161 (42.86%), Query Frame = 0 

Query: 1   MENTWQCYNN-VIVEDYDNCSSVEMGIK*S*CDERIDTESRCDK*VDTISRTIQ------ 60
           MENTWQC N  V VEDYDNC+SVEM      CD  +   S  +K  D  SR+I+      
Sbjct: 1   MENTWQCCNKYVTVEDYDNCTSVEMVS----CDPDVMNGSIYNK--DVTSRSIRYQEQSN 60

Query: 61  ----------HVWRTI*CFRSYCWK*YLSDSIQS*KDIF**CCKP*GLDNPIVCWITVGH 120
                     H+     C      +   S S     D+         LD  +        
Sbjct: 61  MFGEQSNVLGHIVGNSTCQTQSNPRKISSSSAARHGDLIIQLFVGSPLDTNV-------- 120

Query: 121 KC*KGTNLL**K*CKMRLSLSTYIVCGVSILLGNGLFVQLK 145
              K   +      KMRL LSTYIVCGVSILL N  FVQLK
Sbjct: 121 ---KKGQIFRKSDVKMRLFLSTYIVCGVSILLENWFFVQLK 144

[Close]
BLAST of Chy1G012450 vs. NCBI nr
Match: KGN44491.1 (hypothetical protein Csa_016337 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 6.51e-13
Identity = 59/161 (36.65%), Postives = 71/161 (44.10%), Query Frame = 0 

Query: 1   MENTWQCYNN-VIVEDYDNCSSVEMGIK*S*CDERIDTESRCDK*VDTISRTIQ------ 60
           MENTWQC N  V VEDYDNC+SVEM      CD  +   S  +K  D  SR+I+      
Sbjct: 1   MENTWQCCNKYVTVEDYDNCTSVEMVS----CDPDVMNGSIYNK--DVTSRSIRYQEQSN 60

Query: 61  ----------HVWRTI*CFRSYCWK*YLSDSIQS*KDIF**CCKP*GLDNPIVCWITVGH 120
                     H+     C      +   S S     D+         + +P+   +  G 
Sbjct: 61  MFGEQSNVLGHIVGNSTCQTQSNPRKISSSSAARHGDLI----IQLFVGSPLDTNVKKGQ 120

Query: 121 KC*KGTNLL**K*CKMRLSLSTYIVCGVSILLGNGLFVQLK 144
              K          KMRL LSTYIVCGVSILL N  FVQLK
Sbjct: 121 IFRKSDV-------KMRLFLSTYIVCGVSILLENWFFVQLK 144

The following BLAST results are available for this feature:
BLAST of Chy1G012450 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G012450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9M41.5e-0836.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G313940 PE=4 SV=1[more]
BLAST of Chy1G012450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44491.16.51e-1336.65hypothetical protein Csa_016337 [Cucumis sativus][more]
BLAST of Chy1G012450 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G012450.1Chy1G012450.1mRNA