Chy1G010840 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G010840
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	30S ribosomal protein S10
Location	chrH01: 12245479 .. 12247400 (+)
RNA-Seq Expression	Chy1G010840
Synteny	Chy1G010840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCCAAATTTCCTCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCTCCGATACCATTGAACCACCTCCCGAAATCTTGGAGGGCTCTGGAGTTTCCACTCTCGAGGTTTGTCATCATTTTCTTCGGAATGGACCAAAATGTTATAATTTCTCTAGGTTTTCTAATGGGTGTAAGAATTTTTTTTTCTGGGTTCTTTTTCCCTCTTTTTTTAAAATTTACATTTCGTTTTCAATTGCATTGGAACTTGGACAACGTTTCTGTTTTTTTTTTTTCTTTTCTAATGTTGTGTTTATGTTTAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTAGATAAGGTAAATCTTAGGTTTTTCAGATTATGTTTTACTCCAGCTTCTTGTGGCTTTCTGAATATATAAAATGTTATGCTGAGATACTTCTGATATCCAAACTGAACCCTGGAATATATATTGGTTCTGACGAGTTAAAGAAAGAATGGCCAGAAAATACACAATGGAATTATTTAATGAGATTAAATCAGCATCTTGATTTGTCATCCTGCTAAGTTGATTGGGTAAAGTCATGAGTGAATGGAAAATTTACATTTTATGTATCAGTTTTAGTTGTAGTGTTGCCTTAAAAGCTTATAACATGCTTGGGAGTGATTCTTAAATAGTTTAAATCATTTTTTTTTTCATTTTCTAAACCACTCCAAAAATGCTTTTAATAATTCAAAATCAATTTTAATAGTATGAGAGCTGTGCCTAAGACTCTAAAGTATATAATTAAACATTGGATTGATTTGGGTGATTAAAGGTATATTTTAAAGTGATTTTGAATAATGATAAAAGTGATTCTAACTATTTCAAAATCACTCACAAACATGCACAAAATAAGGTAATTAACCTAATGCAATATTGAAAGTTTCTAATGTAGTGGGATTGAGTGGAATGTGGCAGTTCCATATTCCTTTGTATCCTGAAACAACCTCCTGAACTGGTTAGGGCATAGTTCTTCAATTGACAATTGCTCCACTGGCTGAATTTCTGTGACATATTGGCCCATTAGGATAATAGATATATGCATACAAATTGGTACAAAATTGAGCTTTTATTGAAATAAACAAAAGAATACAAGGGCATACAAGGTTAGGACTCAAATCCAAAAGAACAAGAACAAGTTCATAGGTAAAAAAGGTCTAGTGAGCAAAGCTCAAGAGATGCCAAGAACCTAGTCACTTCCGTAAATGGCGACCAAGATAGTCATTTTGTACCTTTATATTTACTAGACGTCGATGTAGTTTTCAGTAAGTCTCAATGCTGTGTTGTTCGATTTGTTTGATTATCTGTGGTAGGAGGTGTGTCTAGGGACTTATGTCAGCTAATTGGTTTTGTAATAGATAGTCTTCATCTTTATCTTATGTCTGGATGATTTTAATGAACTAAAGATGTTTGTGGTTTCAGATGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

mRNA sequence

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCCAAATTTCCTCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCTCCGATACCATTGAACCACCTCCCGAAATCTTGGAGGGCTCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTAGATAAGATGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCCAAATTTCCTCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCTCCGATACCATTGAACCACCTCCCGAAATCTTGGAGGGCTCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTAGATAAGATGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL*

Homology

[Close]

BLAST of Chy1G010840 vs. ExPASy Swiss-Prot
Match: Q9M4Y3 (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-63
Identity = 142/212 (66.98%), Postives = 157/212 (74.06%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPST------RL 60
           MA SSLS TI+ SP   ++ SS  +KP+       SS +   + L  S PS+      R+
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKL 120
           +AAPEVL+S +T  P   + EGS              TSAL IG D D+MAPKQKIRIKL
Sbjct: 61  FAAPEVLESQET-GPESYVEEGS-------------ETSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]

BLAST of Chy1G010840 vs. ExPASy Swiss-Prot
Match: Q9LK61 (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.5e-61
Identity = 136/211 (64.45%), Postives = 160/211 (75.83%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASS-----STALKLKPLQFSFPSTRLY 60
           MA+S++S+ ++PS  +  S S  S++ K    P+SS     S+ +  KP   S   T+++
Sbjct: 1   MAVSTVSSFLLPSFGI-PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKVF 60

Query: 61  AAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLR 120
           A P      DT++P PEIL+            EVP +S++S+  D DKMAPKQKIRIKLR
Sbjct: 61  AVP------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLR 120

Query: 121 SYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180
           SYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ
Sbjct: 121 SYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180

Query: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           R+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Chy1G010840 vs. ExPASy Swiss-Prot
Match: P82162 (30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 5.3e-57
Identity = 132/211 (62.56%), Postives = 146/211 (69.19%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTR-----LY 60
           MA SS+SA ++ SP    + SS S+K  F    + +        LQ     +       +
Sbjct: 1   MATSSISAALL-SPLTLRNASSSSTKQDFSTLSSLNLRRTLTPTLQSGHTLSNSSNFATF 60

Query: 61  AAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLR 120
           AAP  L          E+LE S  S  +G +     TS +SI  D D+MAPKQKIRIKLR
Sbjct: 61  AAPGAL----------EVLETSPDSFEDGSE-----TSKISIAADSDQMAPKQKIRIKLR 120

Query: 121 SYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180
           SYWVPLIEDSCKQIMDAAR TNAK MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ
Sbjct: 121 SYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180

Query: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 195

[Close]

BLAST of Chy1G010840 vs. ExPASy Swiss-Prot
Match: P17009 (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.3e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]

BLAST of Chy1G010840 vs. ExPASy Swiss-Prot
Match: B7K833 (30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]

BLAST of Chy1G010840 vs. ExPASy TrEMBL
Match: A0A0A0LEH6 (Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.9e-108
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. ExPASy TrEMBL
Match: A0A1S3CI46 (30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKF PFP SSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGV+TLEGEDFEVPGTSALSIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. ExPASy TrEMBL
Match: A0A6J1F6U3 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442692 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.3e-95
Identity = 184/206 (89.32%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSP+LF  LSS   KP+F PF  SSSTALKLKPL FS PS+R+YAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSD  EPPPEILE SG +TLEGEDFE PGTSA SIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. ExPASy TrEMBL
Match: A0A6J1J2J9 (30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480677 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94
Identity = 183/206 (88.83%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLF  +SS SSKPK  PF ASS++  KL PLQFS  STR+YAAPEV
Sbjct: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDS  T EPPPEILEGSG + LEGEDFEVPGTSALSIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 212

[Close]

BLAST of Chy1G010840 vs. ExPASy TrEMBL
Match: A0A6J1CD58 (30S ribosomal protein S10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010584 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.3e-94
Identity = 182/206 (88.35%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSA+IIPSPTL   LSS SSKP+  PF  SSSTALKLKPLQFS  STR+YAAPEV
Sbjct: 1   MAISSLSASIIPSPTLLGPLSSLSSKPRLLPFSGSSSTALKLKPLQFSSSSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSG STLEGE++E PGTSALSIGEDVD++APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGASTLEGEEYETPGTSALSIGEDVDRLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAAR+TNAK MGPVPLPTKKRIYCV+KSPHVHKD+RFHFE RTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARSTNAKIMGPVPLPTKKRIYCVIKSPHVHKDSRFHFETRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. NCBI nr
Match: XP_004150471.1 (30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_031744994.1 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >KAE8645988.1 hypothetical protein Csa_015449 [Cucumis sativus])

HSP 1 Score: 399 bits (1024), Expect = 8.68e-140
Identity = 204/206 (99.03%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. NCBI nr
Match: XP_008462962.2 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 390 bits (1003), Expect = 1.38e-136
Identity = 200/206 (97.09%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKF PFP SSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGV+TLEGEDFEVPGTSALSIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. NCBI nr
Match: XP_038899555.1 (30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S ribosomal protein S10, chloroplastic [Benincasa hispida])

HSP 1 Score: 377 bits (968), Expect = 2.99e-131
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLF+SLSSHSSKPK  PF   SSTALKLKPLQFS P+TR+Y APEV
Sbjct: 1   MAISSLSATIIPSPTLFSSLSSHSSKPKLLPFSGLSSTALKLKPLQFSLPTTRVYVAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGV+TLEGEDFEVPGTSAL IGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALGIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. NCBI nr
Match: XP_022935934.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 357 bits (917), Expect = 1.78e-123
Identity = 184/206 (89.32%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSP+LF  LSS   KP+F PF  SSSTALKLKPL FS PS+R+YAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSD  EPPPEILE SG +TLEGEDFE PGTSA SIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. NCBI nr
Match: KAG7024950.1 (30S ribosomal protein S10, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357 bits (917), Expect = 1.78e-123
Identity = 184/206 (89.32%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSP+LF  LSS   KP+F PF  SSSTALKLKPL FS PS+R+YAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLRSYWVP 120
           LDSSD  EPPPEILE SG +TLEGEDFE PGTSA SIGEDVDK+APKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGTATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Chy1G010840 vs. TAIR 10
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-62
Identity = 136/211 (64.45%), Postives = 160/211 (75.83%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASS-----STALKLKPLQFSFPSTRLY 60
           MA+S++S+ ++PS  +  S S  S++ K    P+SS     S+ +  KP   S   T+++
Sbjct: 1   MAVSTVSSFLLPSFGI-PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKVF 60

Query: 61  AAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLR 120
           A P      DT++P PEIL+            EVP +S++S+  D DKMAPKQKIRIKLR
Sbjct: 61  AVP------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLR 120

Query: 121 SYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180
           SYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ
Sbjct: 121 SYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180

Query: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           R+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Chy1G010840 vs. TAIR 10
Match: AT3G13120.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-62
Identity = 136/211 (64.45%), Postives = 160/211 (75.83%), Query Frame = 0


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASS-----STALKLKPLQFSFPSTRLY 60
           MA+S++S+ ++PS  +  S S  S++ K    P+SS     S+ +  KP   S   T+++
Sbjct: 1   MAVSTVSSFLLPSFGI-PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKVF 60

Query: 61  AAPEVLDSSDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKMAPKQKIRIKLR 120
           A P      DT++P PEIL+            EVP +S++S+  D DKMAPKQKIRIKLR
Sbjct: 61  AVP------DTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLR 120

Query: 121 SYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180
           SYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ
Sbjct: 121 SYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180

Query: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           R+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

The following BLAST results are available for this feature:

BLAST of Chy1G010840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4Y3	2.9e-63	66.98	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354...	[more]
Q9LK61	3.5e-61	64.45	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82162	5.3e-57	62.56	30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R...	[more]
P17009	5.3e-33	66.33	Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ...	[more]
B7K833	2.0e-32	62.00	30S ribosomal protein S10 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G...	[more]

BLAST of Chy1G010840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH6	8.9e-108	99.03	Ribosomal_S10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7690...	[more]
A0A1S3CI46	2.4e-105	97.09	30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224...	[more]
A0A6J1F6U3	2.3e-95	89.32	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J2J9	1.5e-94	88.83	30S ribosomal protein S10, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1CD58	3.3e-94	88.35	30S ribosomal protein S10, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Chy1G010840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150471.1	8.68e-140	99.03	30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 30S r...	[more]
XP_008462962.2	1.38e-136	97.09	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo]	[more]
XP_038899555.1	2.99e-131	93.69	30S ribosomal protein S10, chloroplastic [Benincasa hispida] >XP_038899556.1 30S...	[more]
XP_022935934.1	1.78e-123	89.32	30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata]	[more]
KAG7024950.1	1.78e-123	89.32	30S ribosomal protein S10, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Chy1G010840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13120.1	2.5e-62	64.45	Ribosomal protein S10p/S20e family protein	[more]
AT3G13120.2	2.5e-62	64.45	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 109..122 score: 42.58 coord: 165..179 score: 52.82 coord: 144..159 score: 53.37
IPR001848	Ribosomal protein S10	TIGRFAM	TIGR01049	TIGR01049	coord: 108..205 e-value: 1.2E-39 score: 132.6
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..206
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 107..206 score: 24.177229
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 111..205 e-value: 3.9E-51 score: 185.9
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 111..205 e-value: 1.9E-32 score: 111.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 97..206 e-value: 2.4E-41 score: 142.3
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 109..206
None	No IPR available	PANTHER	PTHR11700:SF31	BNAC05G40270D PROTEIN	coord: 1..206
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 133..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G010840.1	Chy1G010840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding