Chy1G010690 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G010690
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Protein NYNRIN-like
Location	chrH01: 11989248 .. 11989496 (+)
RNA-Seq Expression	Chy1G010690
Synteny	Chy1G010690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACACTACTTTGTGCAAGACTATATACAAGTTGAGTGCATGCAAAAAAGGGCGCCTCAAAATCAAGCTCGAAGGCTTCATTAGCGATTCCTCTTGTTCAAGCTCAAAGGCTTTATCGATGATTCCTCATATTCAAGCTCAGAGGCTTCATCGATGCTTCCTCGTATTCAAGCTCGAAGGCTTCATTGATGCTTCCTCATATTCAAGCTCGAAGGCTTCATTGACGCCTCCTCATATTCAAGCTTGA

mRNA sequence

ATGTACACTACTTTGTGCAAGACTATATACAAGTTGAGTGCATGCAAAAAAGGGCGCCTCAAAATCAAGCTCGAAGGCTTCATTAGCGATTCCTCTTGTTCAAGCTCAAAGGCTTTATCGATGATTCCTCATATTCAAGCTCAGAGGCTTCATCGATGCTTCCTCGTATTCAAGCTCGAAGGCTTCATTGATGCTTCCTCATATTCAAGCTCGAAGGCTTCATTGACGCCTCCTCATATTCAAGCTTGA

Coding sequence (CDS)

ATGTACACTACTTTGTGCAAGACTATATACAAGTTGAGTGCATGCAAAAAAGGGCGCCTCAAAATCAAGCTCGAAGGCTTCATTAGCGATTCCTCTTGTTCAAGCTCAAAGGCTTTATCGATGATTCCTCATATTCAAGCTCAGAGGCTTCATCGATGCTTCCTCGTATTCAAGCTCGAAGGCTTCATTGATGCTTCCTCATATTCAAGCTCGAAGGCTTCATTGACGCCTCCTCATATTCAAGCTTGA

Protein sequence

MYTTLCKTIYKLSACKKGRLKIKLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA*

Homology

[Close]

BLAST of Chy1G010690 vs. ExPASy TrEMBL
Match: A0A5D3CNR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00180 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.9e-15
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K EGFI  SS SS KA  M+PHIQA++LHRCFLVFKLEGFIDAS+YSS KAS T P+IQA
Sbjct: 16 KFEGFIDASSYSSPKASLMLPHIQARKLHRCFLVFKLEGFIDASTYSSLKASSTLPYIQA 75

[Close]

BLAST of Chy1G010690 vs. ExPASy TrEMBL
Match: A0A5D3DGB4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00460 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K +GFI+ SS SSS A  M P+I AQRLHR FL+FKLE FIDAS+YSS KAS T PHIQA
Sbjct: 16 KFKGFINASSYSSSNASLMFPYIHAQRLHRSFLIFKLESFIDASTYSSLKASSTLPHIQA 75

[Close]

BLAST of Chy1G010690 vs. ExPASy TrEMBL
Match: A0A5A7SS76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00490 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQ 82
          K EGFI  SS SS KA  M+PHIQA++LHRCFL+FKLEGFID S YSSSKAS    H Q
Sbjct: 16 KFEGFIDASSYSSPKASLMLPHIQARKLHRCFLMFKLEGFIDTSLYSSSKASSKISHTQ 74

[Close]

BLAST of Chy1G010690 vs. ExPASy TrEMBL
Match: A0A5D3B6L8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00110 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K E FI  SS SSSKA S +PHIQA+++HRCFL+FKLEGFI+A +YSS KA  T  HIQA
Sbjct: 16 KFEIFIDASSYSSSKASSTLPHIQARKVHRCFLIFKLEGFINAFTYSSLKALSTLAHIQA 75

[Close]

BLAST of Chy1G010690 vs. ExPASy TrEMBL
Match: A0A5A7UF48 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold778G00500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K E FI  SS SSSKA S +PHIQA+++HRCFL+FKLEGFI+A +YSS KA  T  HIQA
Sbjct: 16 KFEIFIDASSYSSSKASSTLPHIQARKVHRCFLIFKLEGFINAFTYSSLKALSTLAHIQA 75

[Close]

BLAST of Chy1G010690 vs. NCBI nr
Match: TYK13543.1 (hypothetical protein E5676_scaffold299G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.45e-20
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K EGFI  SS SS KA  M+PHIQA++LHRCFLVFKLEGFIDAS+YSS KAS T P+IQA
Sbjct: 16 KFEGFIDASSYSSPKASLMLPHIQARKLHRCFLVFKLEGFIDASTYSSLKASSTLPYIQA 75

[Close]

BLAST of Chy1G010690 vs. NCBI nr
Match: KAA0058351.1 (hypothetical protein E6C27_scaffold409G00480 [Cucumis melo var. makuwa] >TYK22498.1 hypothetical protein E5676_scaffold19523G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 7.81e-19
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K +GFI+ SS SSS A  M P+I AQRLHR FL+FKLE FIDAS+YSS KAS T PHIQA
Sbjct: 16 KFKGFINASSYSSSNASLMFPYIHAQRLHRSFLIFKLESFIDASTYSSLKASSTLPHIQA 75

[Close]

BLAST of Chy1G010690 vs. NCBI nr
Match: KAA0032079.1 (hypothetical protein E6C27_scaffold223G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 9.60e-18
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQ 81
          K EGFI  SS SS KA  M+PHIQA++LHRCFL+FKLEGFID S YSSSKAS    H Q
Sbjct: 16 KFEGFIDASSYSSPKASLMLPHIQARKLHRCFLMFKLEGFIDTSLYSSSKASSKISHTQ 74

[Close]

BLAST of Chy1G010690 vs. NCBI nr
Match: TYJ95492.1 (hypothetical protein E5676_scaffold441G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 8.15e-17
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K E FI  SS SSSKA S +PHIQA+++HRCFL+FKLEGFI+A +YSS KA  T  HIQA
Sbjct: 16 KFEIFIDASSYSSSKASSTLPHIQARKVHRCFLIFKLEGFINAFTYSSLKALSTLAHIQA 75

[Close]

BLAST of Chy1G010690 vs. NCBI nr
Match: KAA0053117.1 (hypothetical protein E6C27_scaffold778G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 9.19e-17
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 23 KLEGFISDSSCSSSKALSMIPHIQAQRLHRCFLVFKLEGFIDASSYSSSKASLTPPHIQA 82
          K E FI  SS SSSKA S +PHIQA+++HRCFL+FKLEGFI+A +YSS KA  T  HIQA
Sbjct: 16 KFEIFIDASSYSSSKASSTLPHIQARKVHRCFLIFKLEGFINAFTYSSLKALSTLAHIQA 75

The following BLAST results are available for this feature:

BLAST of Chy1G010690 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G010690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNR5	7.9e-15	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DGB4	1.6e-12	70.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SS76	1.6e-12	69.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B6L8	1.4e-11	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UF48	1.4e-11	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Chy1G010690 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13543.1	1.45e-20	75.00	hypothetical protein E5676_scaffold299G00180 [Cucumis melo var. makuwa]	[more]
KAA0058351.1	7.81e-19	70.00	hypothetical protein E6C27_scaffold409G00480 [Cucumis melo var. makuwa] >TYK2249...	[more]
KAA0032079.1	9.60e-18	69.49	hypothetical protein E6C27_scaffold223G00490 [Cucumis melo var. makuwa]	[more]
TYJ95492.1	8.15e-17	66.67	hypothetical protein E5676_scaffold441G00110 [Cucumis melo var. makuwa]	[more]
KAA0053117.1	9.19e-17	66.67	hypothetical protein E6C27_scaffold778G00500 [Cucumis melo var. makuwa]	[more]

BLAST of Chy1G010690 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G010690.1	Chy1G010690.1	mRNA