Chy1G010200 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G010200
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ribosomal protein S12
Location	chrH01: 10766479 .. 10766769 (+)
RNA-Seq Expression	Chy1G010200
Synteny	Chy1G010200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAAAAGGGGTGCTTCGATCGGGAGTAATCACTAGTGAGAGGGCGATGCCTACATTAAATCAATTTATTCATCATGGTAGAGAAGAAAAACAGCGAACGGACCGTACTCGAGCTTCAGATCAATGTCCCCAGAAGCAAGGAGTACGCCTGCATCTTGCAACGAGAACACCGAAAAAAGCTAATTCACCTCCACGTAAGATAGCCAAAGTATGGTTGAGCAATCGACAAGATATATTTGCTCACATTCCGGGTGAAGATATATTTGCTCACATTCTATGGTCTTAA

mRNA sequence

ATGAATGGAAAAGGGGTGCTTCGATCGGGAGTAATCACTAGTGAGAGGGCGATGCCTACATTAAATCAATTTATTCATCATGGTAGAGAAGAAAAACAGCGAACGGACCGTACTCGAGCTTCAGATCAATGTCCCCAGAAGCAAGGAGTACGCCTGCATCTTGCAACGAGAACACCGAAAAAAGCTAATTCACCTCCACGTAAGATAGCCAAAGTATGGTTGAGCAATCGACAAGATATATTTGCTCACATTCCGGGTGAAGATATATTTGCTCACATTCTATGGTCTTAA

Coding sequence (CDS)

ATGAATGGAAAAGGGGTGCTTCGATCGGGAGTAATCACTAGTGAGAGGGCGATGCCTACATTAAATCAATTTATTCATCATGGTAGAGAAGAAAAACAGCGAACGGACCGTACTCGAGCTTCAGATCAATGTCCCCAGAAGCAAGGAGTACGCCTGCATCTTGCAACGAGAACACCGAAAAAAGCTAATTCACCTCCACGTAAGATAGCCAAAGTATGGTTGAGCAATCGACAAGATATATTTGCTCACATTCCGGGTGAAGATATATTTGCTCACATTCTATGGTCTTAA

Protein sequence

MNGKGVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGEDIFAHILWS*

Homology

[Close]

BLAST of Chy1G010200 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-26
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. ExPASy Swiss-Prot
Match: P60097 (Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-26
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.6e-26
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV L+NR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLANR 60

Query: 78 QDIFAHIPGE 88
           DIF HIPGE
Sbjct: 61 HDIFPHIPGE 70

[Close]

BLAST of Chy1G010200 vs. ExPASy Swiss-Prot
Match: P28520 (Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-25
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT NQ I HGREEKQRTDRTRASDQCPQKQGV L ++TRTPKK NS  RKIAKV LSNR
Sbjct: 1  MPTKNQLIRHGREEKQRTDRTRASDQCPQKQGVCLRVSTRTPKKPNSALRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-25
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MP+LNQ I HGREEK+RTDRTRA DQCPQKQGV   ++TRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. ExPASy TrEMBL
Match: A0A5A7VB34 (NADH dehydrogenase subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46348G00010 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.8e-30
Identity = 70/83 (84.34%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 5   GVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANS 64
           G   SGVITSERAMPT NQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS
Sbjct: 109 GCFGSGVITSERAMPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNS 168

Query: 65  PPRKIAKVWLSNRQDIFAHIPGE 88
            PRKIAKV LSNR DIFAHIPGE
Sbjct: 169 APRKIAKVRLSNRHDIFAHIPGE 191

[Close]

BLAST of Chy1G010200 vs. ExPASy TrEMBL
Match: A0A251RWN6 (NADH dehydrogenase subunit 3 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0504411 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.8e-26
Identity = 67/94 (71.28%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 5   GVLRSGVITSER-----------AMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLH 64
           G   SGV TS+R           AMPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  
Sbjct: 82  GCFGSGVTTSDRAKIGGRTKVKSAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR 141

Query: 65  LATRTPKKANSPPRKIAKVWLSNRQDIFAHIPGE 88
           + TRTPKK NS PRKIAKV LSNR DIFAHIPGE
Sbjct: 142 VPTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGE 175

[Close]

BLAST of Chy1G010200 vs. ExPASy TrEMBL
Match: A0A072TTI0 (NADH dehydrogenase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_0082s0040 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 63/80 (78.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 8   RSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPR 67
           R G  T ERAMPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  +  RTPKK NS  R
Sbjct: 228 RGGGRTKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVFKRTPKKPNSAQR 287

Query: 68  KIAKVWLSNRQDIFAHIPGE 88
           KIAKV LSNR DIFAHIPGE
Sbjct: 288 KIAKVRLSNRHDIFAHIPGE 307

[Close]

BLAST of Chy1G010200 vs. ExPASy TrEMBL
Match: A0A2J6JZN3 (NADH dehydrogenase subunit 3 OS=Lactuca sativa OX=4236 GN=LSAT_1X24001 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-25
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 15  ERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWL 74
           ER MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  + TRTPKK NS PRKIAKV L
Sbjct: 132 ERPMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRL 191

Query: 75  SNRQDIFAHIPGE 88
           SNR DIFAHIPGE
Sbjct: 192 SNRHDIFAHIPGE 204

[Close]

BLAST of Chy1G010200 vs. ExPASy TrEMBL
Match: G3EIY3 (Ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=rps12 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.4e-25
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. NCBI nr
Match: KAA0065512.1 (ribosomal protein S12C [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 2.64e-36
Identity = 70/83 (84.34%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 5   GVLRSGVITSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANS 64
           G   SGVITSERAMPT NQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS
Sbjct: 109 GCFGSGVITSERAMPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNS 168

Query: 65  PPRKIAKVWLSNRQDIFAHIPGE 87
            PRKIAKV LSNR DIFAHIPGE
Sbjct: 169 APRKIAKVRLSNRHDIFAHIPGE 191

[Close]

BLAST of Chy1G010200 vs. NCBI nr
Match: KAG4934588.1 (hypothetical protein JHK85_049507 [Glycine max] >KAG4936278.1 hypothetical protein JHK85_051197 [Glycine max] >KAG4987246.1 hypothetical protein JHK86_034937 [Glycine max] >KAG4987259.1 hypothetical protein JHK86_034950 [Glycine max] >KAG5006827.1 hypothetical protein JHK85_025369 [Glycine max])

HSP 1 Score: 127 bits (318), Expect = 1.86e-34
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 13  TSERAMPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKV 72
           T ERAMPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  ++TRTPKK NS PRKIAKV
Sbjct: 65  TKERAMPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKV 124

Query: 73  WLSNRQDIFAHIPGE 87
            LSNR DIFAHIPGE
Sbjct: 125 RLSNRHDIFAHIPGE 139

[Close]

BLAST of Chy1G010200 vs. NCBI nr
Match: YP_004849331.1 (ribosomal protein S12 [Cucumis sativus] >ADZ10758.1 ribosomal protein S12 [Cucumis sativus])

HSP 1 Score: 122 bits (305), Expect = 2.40e-33
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 87
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. NCBI nr
Match: XP_023545340.1 (uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120 bits (302), Expect = 6.85e-33
Identity = 60/70 (85.71%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPTLNQ I HGREEK+RTDRTRASDQCPQKQGVR  L+TRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 87
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. NCBI nr
Match: AEN56124.1 (ribosomal protein S12 [Cucumis melo subsp. melo] >AZP40283.1 ribosomal protein S12 [Cucumis melo var. momordica])

HSP 1 Score: 120 bits (301), Expect = 9.73e-33
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT NQ I HGREEK+RTDRTRASDQCPQKQGVR  LATRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTFNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 87
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-25
Identity = 54/70 (77.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT NQ I HGREEK+RTDRTRA D+CPQK GV   ++TRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-25
Identity = 54/70 (77.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT NQ I HGREEK+RTDRTRA D+CPQK GV   ++TRTPKK NS PRKIAKV LSNR
Sbjct: 1  MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

Query: 78 QDIFAHIPGE 88
           DIFAHIPGE
Sbjct: 61 HDIFAHIPGE 70

[Close]

BLAST of Chy1G010200 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT+ Q I + R+  +   ++ A   CPQ++G    + T TPKK NS  RK+A+V L++ 
Sbjct: 1  MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 78 QDIFAHIPG 87
           +I A+IPG
Sbjct: 61 FEITAYIPG 69

[Close]

BLAST of Chy1G010200 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT+ Q I + R+  +   ++ A   CPQ++G    + T TPKK NS  RK+A+V L++ 
Sbjct: 1  MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 78 QDIFAHIPG 87
           +I A+IPG
Sbjct: 61 FEITAYIPG 69

[Close]

BLAST of Chy1G010200 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 18 MPTLNQFIHHGREEKQRTDRTRASDQCPQKQGVRLHLATRTPKKANSPPRKIAKVWLSNR 77
          MPT+ Q I + R+  +   ++ A   CPQ++G    + T TPKK NS  RK+A+V L++ 
Sbjct: 1  MPTIKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSG 60

Query: 78 QDIFAHIPG 87
           +I A+IPG
Sbjct: 61 FEITAYIPG 69

The following BLAST results are available for this feature:

BLAST of Chy1G010200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60096	1.0e-26	84.29	Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE...	[more]
P60097	1.0e-26	84.29	Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE...	[more]
P27070	8.6e-26	81.43	Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1	[more]
P28520	1.9e-25	82.86	Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
P68535	7.3e-25	80.00	Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV...	[more]

BLAST of Chy1G010200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VB34	7.8e-30	84.34	NADH dehydrogenase subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A251RWN6	6.8e-26	71.28	NADH dehydrogenase subunit 3 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g05044...	[more]
A0A072TTI0	2.6e-25	78.75	NADH dehydrogenase subunit 3 OS=Medicago truncatula OX=3880 GN=MTR_0082s0040 PE=...	[more]
A0A2J6JZN3	3.4e-25	83.56	NADH dehydrogenase subunit 3 OS=Lactuca sativa OX=4236 GN=LSAT_1X24001 PE=3 SV=1	[more]
G3EIY3	4.4e-25	87.14	Ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=rps12 PE=3 SV=1	[more]

BLAST of Chy1G010200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065512.1	2.64e-36	84.34	ribosomal protein S12C [Cucumis melo var. makuwa]	[more]
KAG4934588.1	1.86e-34	84.00	hypothetical protein JHK85_049507 [Glycine max] >KAG4936278.1 hypothetical prote...	[more]
YP_004849331.1	2.40e-33	87.14	ribosomal protein S12 [Cucumis sativus] >ADZ10758.1 ribosomal protein S12 [Cucum...	[more]
XP_023545340.1	6.85e-33	85.71	uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]	[more]
AEN56124.1	9.73e-33	85.71	ribosomal protein S12 [Cucumis melo subsp. melo] >AZP40283.1 ribosomal protein S...	[more]

BLAST of Chy1G010200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07675.1	7.5e-25	77.14	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	7.5e-25	77.14	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	1.1e-07	40.58	ribosomal protein S12A	[more]
ATCG01230.1	1.1e-07	40.58	ribosomal protein S12B	[more]
ATCG00905.1	1.1e-07	40.58	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 75..94 score: 33.33 coord: 44..59 score: 53.04 coord: 59..74 score: 66.06
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 29..92 e-value: 1.6E-13 score: 50.3
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 18..87
None	No IPR available	GENE3D	2.40.50.140		coord: 15..94 e-value: 9.2E-21 score: 75.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..48
None	No IPR available	PANTHER	PTHR11652:SF1	MITOCHONDRIAL RIBOSOMAL PROTEIN, SMALL	coord: 18..87
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 19..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G010200.1	Chy1G010200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003735	structural constituent of ribosome