Chy1G007760 (gene) Cucumber (hystrix) v1

Overview
NameChy1G007760
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionprotein RADIALIS-like 3
LocationchrH01: 5997055 .. 5999041 (-)
RNA-Seq ExpressionChy1G007760
SyntenyChy1G007760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTTGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTCGGTGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGACAGATCGAGTCCGGTCGTGTCCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGTTAGTGAACTCAAAAGATGATGTTCTTTTCTTCTTTTCTTTTTCGATTATTGGATGGTGATTCGAAATATATATGTTGTTTAACAATTATTGAATACAATTAAGTAAATTTTCTTTAAACTACATACGTGTGATATTGTGGAAGTCTCTTTCAATGAAATTATATACTTTAATCGATCGAGATCGAGTTATTTCAGTTTGGGCTTGCATGATATTAAATTTTAAAATCTATATCTCAACCATAGTTTTTAATATTTCAAACTATTTTGTAGCTGAAGATAGGTATCATAATTTGGTTTTTGGGCACTAGTTCCTTTCTATCATGTGGAGTATTCTTTGGTTGGATTTGGAGATTTTTGTATTTTGGTACCAGGTTTAGGTGAGTTTTATGTGCTTGGTTTTGTAGTTTTGTGATTAGGGTTTAGATTTTCTTTATATGGTAGGTGAATATTTGTGAGACTTTGAAATTTATTGGCTAGTTTGGTGGCCACATTCGTTCAAGTATATAATTAGTTTTGAGTTGGTATAAATTATTTAAGTTTAACCTTTTAAATATATAGAAATGATTTGGAATAAAATTTGAAGTATTTAATTTTCAAAACGACTTCTTTTAGGAGAAAATTACCCTTTGTTAATCATTCAAAATAGTTTTTGAAGTGTTTTTTAAACAATTTTTATCAAAAGAACTTAAATAAAAAAAGTTTAAATTGACTTTAAAAAAAATTCAAGTCAATTTAAACGGATCCTAAAGTTTAGGTCAAATTGATTCAAAAATAATTCTAAAATTAACACAATTACTCATAGTTTTCTATATTTTTAACGAACAAAATTAAACATTAAACAAACAAGAGTTCAACAATTTTGTTGTCTTTTTTCTTTCTTTTGAAAATGTATTCACAAAATAAGAGATGACGAGATAATCGATGCAATGGGACATCCTAACGAGGTTGGCACCTTCCTAACATCTTCAATATTTCAACATAATTAACCTTATGATTGGTTAATTATCTTTAACCAACAAAAATTGAAAAATATATATAACCCAAAAAATGCAATAAACTAATGGGAAAAATCCAACGAAAAAGGAAAAACATTTAATTATCATAAAAAAAATGTTAGAGCACTAAATAAATTAATGATAAAATATAATCCTTTCAATTCTAGAATTATTACAAAATAAATAATAACAACAACAATAATAATTTGCTTGGTGTCGCTAAAATCACAACTAAACACAAAAAAGTTAATAATCACGATAAATTTAATTACATTAAATCTATATAACACTAAATTAACACAAAATTCAAAGAGGTAAAGATATGACATTATTATAACAAAAGTGAGCTTAATTCAAGAGTTAACATCCTCTCTTCCATCTGAAAAGATTGAAAGTTGTATTTCTCATCCCACAACTATTGAATTAAAATAAAAGATATGACGGCCACTATAAATGTTTAAAACAGAAGAGCATCAGTTGGAACACATGCAAGATCTCCAAACTTTGATTCAATGATTTAACTGTCACTTGCTTTAAGCTCTTTTCCCCATTCCTTTAAGTTGTAGGACTAATTTGAAGAAAACACATGTAAATTTGATGAGTTAAATATCTTAAATAGGACAGTGAAAGAAAAATCAAGCTAAAAGTTTTTATTTTGAGATCCGTTCTTCACTTTGCCTTTGATTTTTGTTTTGCTAGGCTGTTGAAGTATCTGAAGCTTCAATGA

mRNA sequence

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTTGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTCGGTGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGACAGATCGAGTCCGGTCGTGTCCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGA

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTTGAGAAAGCATTGGCATTGTACGACAAAGATACACCTGAGAGATGGCAAAATATCGCCACTGCAGTCGGTGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGACAGATCGAGTCCGGTCGTGTCCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTGAAGTATCTGAAGCTTCAATGA

Protein sequence

MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ*
Homology
[Close]
BLAST of Chy1G007760 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.5e-25
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+    G+ +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]
BLAST of Chy1G007760 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]
BLAST of Chy1G007760 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]
BLAST of Chy1G007760 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR   G +N    +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]
BLAST of Chy1G007760 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-21
Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 15 WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPI 74
          W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ +EV++HYEIL+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRGT-SNRDEELRLLKYLKLQ 97
          PNYR T  N   + +  + LK++
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]
BLAST of Chy1G007760 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.2e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.3e-45
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. ExPASy TrEMBL
Match: A0A5D3DF44 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00100 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.6e-43
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL 94
          LEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]
BLAST of Chy1G007760 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDL +IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDL++IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. NCBI nr
Match: XP_008447023.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 195 bits (495), Expect = 1.08e-62
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. NCBI nr
Match: XP_004151090.1 (protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 7.30e-61
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. NCBI nr
Match: KAA0055424.1 (protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 6.36e-58
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL 93
          LEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]
BLAST of Chy1G007760 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 177 bits (448), Expect = 1.60e-55
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS DEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174 bits (442), Expect = 1.32e-54
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]
BLAST of Chy1G007760 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-26
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+    G+ +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]
BLAST of Chy1G007760 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]
BLAST of Chy1G007760 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-24
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR   G +N    +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]
BLAST of Chy1G007760 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR 79
          +EDL  IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]
BLAST of Chy1G007760 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS +EV+RHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRQIESGRVPIPNYRGTS 82
          L D+  IESGR P P YR T+
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:
BLAST of Chy1G007760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GW759.5e-2555.34Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1[more]
Q6NNN01.8e-2360.98Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q1A1732.3e-2355.00Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
F4JVB86.8e-2352.48Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q58FS32.2e-2154.22Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
BLAST of Chy1G007760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BHB09.2e-47100.00protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1[more]
A0A0A0K2A22.3e-4597.92SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S... [more]
A0A5D3DF443.6e-4395.70Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1GKW18.3e-4088.54protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1[more]
A0A6J1ICR61.8e-3987.50protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1[more]
BLAST of Chy1G007760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447023.11.08e-62100.00PREDICTED: protein RADIALIS-like 3 [Cucumis melo][more]
XP_004151090.17.30e-6197.92protein RADIALIS-like 3 [Cucumis sativus][more]
KAA0055424.16.36e-5895.70protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-... [more]
XP_038888995.11.60e-5589.58protein RADIALIS-like 3 isoform X1 [Benincasa hispida][more]
XP_023554816.11.32e-5489.58protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo][more]
BLAST of Chy1G007760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19510.16.7e-2655.34RAD-like 5 [more]
AT1G75250.21.7e-2455.00RAD-like 6 [more]
AT4G39250.14.8e-2452.48RAD-like 1 [more]
AT1G75250.11.4e-2362.82RAD-like 6 [more]
AT2G18328.14.5e-2259.26RAD-like 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 11..63
e-value: 2.1E-7
score: 40.6
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 7..61
score: 6.365003
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 14..61
e-value: 4.26734E-6
score: 38.3254
NoneNo IPR availableGENE3D1.10.10.60coord: 7..74
e-value: 1.2E-23
score: 84.7
NoneNo IPR availablePANTHERPTHR43952:SF29PROTEIN RADIALIS-LIKE 3coord: 1..80
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..57
e-value: 7.9E-6
score: 26.0
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..80
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G007760.1Chy1G007760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003723 RNA binding