Chy1G006600 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G006600
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH01: 4730340 .. 4730884 (+)
RNA-Seq Expression	Chy1G006600
Synteny	Chy1G006600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAGTGTTGAACCAAAATCCAGCTTTTCAGCCGCGTTCGTGTAATTTAAATATCCCTTAAACCTTCATGACCAGTACTTCCGCTCTCTATTTAAACATTGTCGATTACGATTCCCATTCCCTCAAATTTCAATTGAAAACCCCTAACAAACATGATCGAAGGAAAGCAGGTCGCTTCCCCGAACGGAACCTTCCGTCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCAAAGCCAATGGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTTTGTTTCTCATAGCGAAGAAAATGGAGTTGTACGAATAAAAATGGTGGTCAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCTATGGGCGGCGGCGGCGGCGAGGGAGGCGGAGGAGAAGGAGTTGCATCGGCCTCGGTTTCCATCGAACAGCGGTTGACGGTTGTGAGGCGGAAGCAATTGCTTCGTGCGAAACTGGCGGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATTGATTCATTCTGA

mRNA sequence

ATGTTCAGTGTTGAACCAAAATCCAGCTTTTCAGCCGCGTTCGTAGCTCGATGCCGGAAAAATGCCAAAGCCAATGGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTTTGTTTCTCATAGCGAAGAAAATGGAGTTGTACGAATAAAAATGGTGGTCAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCTATGGGCGGCGGCGGCGGCGAGGGAGGCGGAGGAGAAGGAGTTGCATCGGCCTCGGTTTCCATCGAACAGCGGTTGACGGTTGTGAGGCGGAAGCAATTGCTTCGTGCGAAACTGGCGGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATTGATTCATTCTGA

Coding sequence (CDS)

ATGTTCAGTGTTGAACCAAAATCCAGCTTTTCAGCCGCGTTCGTAGCTCGATGCCGGAAAAATGCCAAAGCCAATGGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTTTGTTTCTCATAGCGAAGAAAATGGAGTTGTACGAATAAAAATGGTGGTCAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCTATGGGCGGCGGCGGCGGCGAGGGAGGCGGAGGAGAAGGAGTTGCATCGGCCTCGGTTTCCATCGAACAGCGGTTGACGGTTGTGAGGCGGAAGCAATTGCTTCGTGCGAAACTGGCGGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATTGATTCATTCTGA

Protein sequence

MFSVEPKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLAQVLEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPEEIDSF*

Homology

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BLAST of Chy1G006600 vs. ExPASy TrEMBL
Match: A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-48
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 4   VEPKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLA 63
           V P  +F   F ARCRK+AKAN LLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLA
Sbjct: 8   VSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLA 67

Query: 64  QVLEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPEEID 123
           QVLEAMGGGGG+GGGG GVA+ASVSIEQRL +VRRKQLLRAKLAAATWSPALQSIPEEID
Sbjct: 68  QVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQSIPEEID 127

Query: 124 SF 126
           SF
Sbjct: 128 SF 129

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BLAST of Chy1G006600 vs. ExPASy TrEMBL
Match: A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-42
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 6   PKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLAQV 65
           P  +F   F ARCRK+AKANGLLEAIAKASREG GFVSHSEENGVVRIKMVVKKTDL QV
Sbjct: 10  PNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMVVKKTDLVQV 69

Query: 66  LEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPEEIDSF 125
           LEAM  GGG+GGGG  VA ASVS+E RLTV+RRKQ LRAKLAAATWSPALQSIPEEIDSF
Sbjct: 70  LEAM--GGGDGGGGV-VAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIPEEIDSF 126

[Close]

BLAST of Chy1G006600 vs. ExPASy TrEMBL
Match: A0A6J5VPM4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51099 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.4e-15
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 17  RCRKNAK-----ANGLLEAIAKAS---REGTGFVSH-SEENGVVRIKMVVKKTDLAQVLE 76
           R R N K     +N L+EAIAK +   +EGT  +SH ++E+GVVR+K++V++ DL QVLE
Sbjct: 13  RARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQDLKQVLE 72

Query: 77  AMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAA-----ATWSPALQSIPEEI 123
            M  GGG       V  +S+ +EQRL+++R+K LLRA LAA      +W PALQSIPEEI
Sbjct: 73  LM-NGGGINNQASAVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQGSWCPALQSIPEEI 131

[Close]

BLAST of Chy1G006600 vs. ExPASy TrEMBL
Match: A0A4Y7II22 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_016956 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.5e-14
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 25  NGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLAQVLEAMGGGGGEGGGGEGVAS 84
           + LLEAIA+    G G VSH++ENGVVR+K++VKK DL Q+LE M  G    G      S
Sbjct: 28  SNLLEAIAQF--HGAGVVSHTDENGVVRMKILVKKQDLKQMLEMMDNGKESSGNNIQQQS 87

Query: 85  ASVSIEQRLTVVRRKQLLRAKLAAA--TWSPALQSIPEEI 123
           +S+S+EQRL V+RRK   RA+ A    TW PALQSIPE++
Sbjct: 88  SSLSLEQRLHVMRRKHQRRAEHAKGRRTWQPALQSIPEDL 125

[Close]

BLAST of Chy1G006600 vs. ExPASy TrEMBL
Match: A0A314YA00 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10648 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.6e-14
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 17  RCRKNAK-----ANGLLEAIAKAS---REGTGFVSH-SEENGVVRIKMVVKKTDLAQVLE 76
           R R N K     +N L+EAIAK +   +EGT  +SH ++E+GVVR+K++V++ DL QVLE
Sbjct: 13  RARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQDLKQVLE 72

Query: 77  AMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAA-----ATWSPALQSIPEEI 123
            M   GG       V  +S+ +EQRL+++R+K LLRA LAA     ++W PALQSIPEEI
Sbjct: 73  LM--NGGINSQASVVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQSSWRPALQSIPEEI 130

[Close]

BLAST of Chy1G006600 vs. NCBI nr
Match: KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (512), Expect = 2.60e-64
Identity = 107/122 (87.70%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 4   VEPKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLA 63
           V P  +F   F ARCRK+AKAN LLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLA
Sbjct: 8   VSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLA 67

Query: 64  QVLEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPEEID 123
           QVLEAMGGGGG+GGGG GVA+ASVSIEQRL +VRRKQLLRAKLAAATWSPALQSIPEEID
Sbjct: 68  QVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQSIPEEID 127

Query: 124 SF 125
           SF
Sbjct: 128 SF 129

[Close]

BLAST of Chy1G006600 vs. NCBI nr
Match: KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])

HSP 1 Score: 180 bits (457), Expect = 5.68e-56
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = 0


Query: 6   PKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDLAQV 65
           P  +F   F ARCRK+AKANGLLEAIAKASREG GFVSHSEENGVVRIKMVVKKTDL QV
Sbjct: 10  PNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMVVKKTDLVQV 69

Query: 66  LEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPEEIDSF 125
           LEAMGGG  +GGGG  VA ASVS+E RLTV+RRKQ LRAKLAAATWSPALQSIPEEIDSF
Sbjct: 70  LEAMGGG--DGGGGV-VAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIPEEIDSF 126

[Close]

BLAST of Chy1G006600 vs. NCBI nr
Match: XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (432), Expect = 3.54e-52
Identity = 94/123 (76.42%), Postives = 102/123 (82.93%), Query Frame = 0


Query: 3   SVEPKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDL 62
           +  P  +F   F AR RKNAKA+ LLEAIAK SREGTGFVS +EE+GVVRIKMVVKKTDL
Sbjct: 7   TASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDL 66

Query: 63  AQVLEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPEEI 122
           AQVLEAM GGGG GG    VA ASVS+EQRL ++RRKQ LRAKLAAATWSPALQSIPEEI
Sbjct: 67  AQVLEAMAGGGGGGG----VAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIPEEI 125

Query: 123 DSF 125
           DSF
Sbjct: 127 DSF 125

[Close]

BLAST of Chy1G006600 vs. NCBI nr
Match: KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158 bits (399), Expect = 3.99e-47
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 3   SVEPKSSFSAAFVARCRKNAKANGLLEAIAKASREGTGFVSHSEENGVVRIKMVVKKTDL 62
           +  P  +F   F AR RKNAKA+ LLEAIAK SREGTGFVS +EE+GVVRIKMVVKKTDL
Sbjct: 7   TASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDL 66

Query: 63  AQVLEAMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAAATWSPALQSIPE 120
           AQVLEA+ GGGG GG    VA ASVS+E RL ++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 67  AQVLEALAGGGGGGG----VAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

[Close]

BLAST of Chy1G006600 vs. NCBI nr
Match: CAB4290916.1 (unnamed protein product [Prunus armeniaca] >CAB4321236.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 91.3 bits (225), Expect = 1.14e-20
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0


Query: 17  RCRKNAKAN-----GLLEAIAKAS---REGTGFVSH-SEENGVVRIKMVVKKTDLAQVLE 76
           R R N K+N      L+EAIAK +   +EGT  +SH ++E+GVVR+K++V++ DL QVLE
Sbjct: 13  RARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQDLKQVLE 72

Query: 77  AMGGGGGEGGGGEGVASASVSIEQRLTVVRRKQLLRAKLAA-----ATWSPALQSIPEEI 122
            M GGG        V  +S+ +EQRL+++R+K LLRA LAA      +W PALQSIPEEI
Sbjct: 73  LMNGGG-INNQASAVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQGSWCPALQSIPEEI 131

The following BLAST results are available for this feature:

BLAST of Chy1G006600 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G006600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHL7	2.2e-48	87.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K2L8	4.0e-42	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1	[more]
A0A6J5VPM4	5.4e-15	49.17	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51099 PE=4 S...	[more]
A0A4Y7II22	3.5e-14	53.00	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_016956 PE=4 SV=1	[more]
A0A314YA00	4.6e-14	48.33	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_106...	[more]

BLAST of Chy1G006600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025124.1	2.60e-64	87.70	hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936...	[more]
KGN43274.1	5.68e-56	83.33	hypothetical protein Csa_020212 [Cucumis sativus]	[more]
XP_023511743.1	3.54e-52	76.42	uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo]	[more]
KAG6572129.1	3.99e-47	73.73	hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CAB4290916.1	1.14e-20	49.17	unnamed protein product [Prunus armeniaca] >CAB4321236.1 unnamed protein product...	[more]

BLAST of Chy1G006600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 11..122
None	No IPR available	PANTHER	PTHR33148:SF4	OS02G0667300 PROTEIN	coord: 11..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G006600.1	Chy1G006600.1	mRNA