Chy1G005560 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G005560
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Mitochondrial transcription termination factor family protein
Location	chrH01: 3990049 .. 3991035 (+)
RNA-Seq Expression	Chy1G005560
Synteny	Chy1G005560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTAGCGCCAGTCGAAATGGTAATTGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGATAGAAGTATTGATACGATGTTTAGAAAGTGTAGGCGTTTAGAAGATATGCAGAATGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTCGTTCCCATGGTTGAGTGCCTTGCAACACTCAGCACCAAGCCTCATGAAATTGCTGCAGCTATTGCTAAATTTCCTGGTATTCTTTCCTATAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCGTTCTTTCAAGCATTAGGTGTCCCTGAAAAGCAACTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGTTACGGCATTGAATCGAAACTCGTTGAAACTGTAGATTTTCTTGCTGGGGTTGGGCTAACGAAGGAGGGGGTAATTGGAAAAGTTCTTGCAAAAAATCCATTTCTCATGGGTTATAGTGTTGATAAAAGGCTCCGCCCGACTGTGGAGTTTCTGAAATCAATCGGTCTAAACAAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCGGACATTTTGTGTAGGGACGTGGACAAAGTTTTGAGATGTAATTTAGATTATCTAAGGAGCCGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTGTTTTGATCAAGAGCATTCAACATTCTTTAGAACCTCGGATCAGATTTTTGGTCGAAATAATGGGAAGAAAACTTGAGGAAGTTGCTGAATATCCTGACTTTTTTAAGCATGGTTTGAAGAAAAAACTTGAGCTGCGGCATAGATTGTTGAAAGAGAAGAATGTTGACTTTGCCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA

mRNA sequence

ATGGAAAGTAGCGCCAGTCGAAATGGTAATTGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGATAGAAGTATTGATACGATGTTTAGAAAGTGTAGGCGTTTAGAAGATATGCAGAATGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTCGTTCCCATGGTTGAGTGCCTTGCAACACTCAGCACCAAGCCTCATGAAATTGCTGCAGCTATTGCTAAATTTCCTGGTATTCTTTCCTATAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCGTTCTTTCAAGCATTAGGTGTCCCTGAAAAGCAACTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGTTACGGCATTGAATCGAAACTCGTTGAAACTGTAGATTTTCTTGCTGGGGTTGGGCTAACGAAGGAGGGGGTAATTGGAAAAGTTCTTGCAAAAAATCCATTTCTCATGGGTTATAGTGTTGATAAAAGGCTCCGCCCGACTGTGGAGTTTCTGAAATCAATCGGTCTAAACAAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCGGACATTTTGTGTAGGGACGTGGACAAAGTTTTGAGATGTAATTTAGATTATCTAAGGAGCCGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTGTTTTGATCAAGAGCATTCAACATTCTTTAGAACCTCGGATCAGATTTTTGGTCGAAATAATGGGAAGAAAACTTGAGGAAGTTGCTGAATATCCTGACTTTTTTAAGCATGGTTTGAAGAAAAAACTTGAGCTGCGGCATAGATTGTTGAAAGAGAAGAATGTTGACTTTGCCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA

Coding sequence (CDS)

ATGGAAAGTAGCGCCAGTCGAAATGGTAATTGTATGCTGTGGTTCTTCAGGGATAAAGGTTTTGATGATAGAAGTATTGATACGATGTTTAGAAAGTGTAGGCGTTTAGAAGATATGCAGAATGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTCCAAATGCCCTAAGATTTTAGCTCTTGGTCTTCAAGAGAAACTCGTTCCCATGGTTGAGTGCCTTGCAACACTCAGCACCAAGCCTCATGAAATTGCTGCAGCTATTGCTAAATTTCCTGGTATTCTTTCCTATAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCGTTCTTTCAAGCATTAGGTGTCCCTGAAAAGCAACTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGTTACGGCATTGAATCGAAACTCGTTGAAACTGTAGATTTTCTTGCTGGGGTTGGGCTAACGAAGGAGGGGGTAATTGGAAAAGTTCTTGCAAAAAATCCATTTCTCATGGGTTATAGTGTTGATAAAAGGCTCCGCCCGACTGTGGAGTTTCTGAAATCAATCGGTCTAAACAAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCGGACATTTTGTGTAGGGACGTGGACAAAGTTTTGAGATGTAATTTAGATTATCTAAGGAGCCGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTGTTTTGATCAAGAGCATTCAACATTCTTTAGAACCTCGGATCAGATTTTTGGTCGAAATAATGGGAAGAAAACTTGAGGAAGTTGCTGAATATCCTGACTTTTTTAAGCATGGTTTGAAGAAAAAACTTGAGCTGCGGCATAGATTGTTGAAAGAGAAGAATGTTGACTTTGCCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTATGA

Protein sequence

MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSELLECNQKKFMMKMGLL*

Homology

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BLAST of Chy1G005560 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 2.2e-118
Identity = 206/321 (64.17%), Postives = 263/321 (81.93%), Query Frame = 0


Query: 8   NGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERI-GIQKRKLPSVVS 67
           N + ++WFFRDKGFDD SID M RKC++LE  Q++ ASENW+YL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL++L   P E+A+AI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVD 187
           GVPE QLGKMIL NPRLISY I++KL   V FLA +GL ++G+IGKVL KNPFLMGYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTVEFLK-SIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSL 247
           KRLRPT EFLK S+GL++  +++V + FP +LCRDV+K+L+ N DYL+  GF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKN 307
           VTGYP +LIKS+++SL+PRIRFLV++MGR ++EVA YP+FF HGLKKK+E R +L+K+ N
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFALSELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

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BLAST of Chy1G005560 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-27
Identity = 75/291 (25.77%), Postives = 148/291 (50.86%), Query Frame = 0


Query: 32  KCRRLEDMQNERASENWEYLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLS 91
           +C  L     E      ++  ++G+ +    ++V   PKI+     + +   +  L    
Sbjct: 304 RCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFG 363

Query: 92  TKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESK 151
               E+   +A  P ++  S+EE+  PL+ +F  LG+P++ + +++++ P L    +E  
Sbjct: 364 LSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKT 423

Query: 152 LVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVDKRLRPTVEFLKS-IGLNKMDLQAVA 211
           +   V FL  +G+  E  IG +L K P L+  S+ K++RP V FL +  G+ + D+  V 
Sbjct: 424 IAPKVRFLQEMGIPNE-AIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVI 483

Query: 212 LKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSLVTGYPPVLIKSIQHSLEPRIRFLVE 271
              P +L   +   L  N+ Y  S G +  ++  ++  +P +L  ++  +L P+ R+L  
Sbjct: 484 AMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD-NLRPKYRYLRR 543

Query: 272 IMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSELLECNQKKF 322
            M R L+++ E+P FF + L++++  RH ++ E  V+F L  +L C  ++F
Sbjct: 544 TMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

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BLAST of Chy1G005560 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-27
Identity = 72/313 (23.00%), Postives = 154/313 (49.20%), Query Frame = 0


Query: 49  EYLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGIL 108
           +YL ++G+++  LP ++ + P++L   +   L P+V+ L  +  +PH++   + ++P +L
Sbjct: 149 DYLGKLGVRQDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERYPELL 208

Query: 109 SYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEG 168
            + +E  +   +A+   +GV  +Q+G +I   P ++   +   +   V+ L G+GL +  
Sbjct: 209 GFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRL- 268

Query: 169 VIGKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDIL----------- 228
            I +++ K P+++G+ ++ +++P +E L   G+ K  L  +  ++PDIL           
Sbjct: 269 AIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRDKLATQ 328

Query: 229 -----------CRDVDKVLR--------------CNLDYLRSRGFKDGEIVSLVTGYPPV 288
                        D  +V+                ++++L S GF   ++  +V   P +
Sbjct: 329 QSLFESSILVSSEDFGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQL 388

Query: 289 LIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSE 326
           L  ++   ++    +    M R LEE+ E+P FF +GL+  +  RH ++ +K    +L+ 
Sbjct: 389 LALNMD-IMKMSFEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHEMVAKKGFTCSLAW 448

[Close]

BLAST of Chy1G005560 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-27
Identity = 71/313 (22.68%), Postives = 155/313 (49.52%), Query Frame = 0


Query: 49  EYLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGIL 108
           +YL ++G+++  LP ++ + P++L   +   L P+V+ L  +  +P ++   + ++P +L
Sbjct: 140 DYLGKLGVRRDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPTDVPRVLERYPELL 199

Query: 109 SYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEG 168
            + +E  +   +A+   +GV  +Q+G +I   P ++   +   +   V+ L G+GL +  
Sbjct: 200 GFKLEGTMSTSVAYLVGIGVGRRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRL- 259

Query: 169 VIGKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDIL----------- 228
            I +++ K P+++G+ + ++++P +E L  IG+ K  L ++ +++PD+L           
Sbjct: 260 AIARIIEKKPYVLGFGLQEKVKPNIEALVDIGVRKEALASIVMQYPDVLGLELRDKLVAQ 319

Query: 229 -----------CRDVDKVLR--------------CNLDYLRSRGFKDGEIVSLVTGYPPV 288
                        D  +VL                ++++L + GF   ++  +V   P +
Sbjct: 320 QSLFESSILVSREDFGRVLERMPQAISLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQL 379

Query: 289 LIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSE 326
           L  +I   +     +    M R LEE+ E+P FF +G++  +  RH ++  K +  +L+ 
Sbjct: 380 LALNID-IMRMNFEYFKNEMERDLEELVEFPAFFTYGIESTVRPRHEMVSRKGLTCSLAW 439

[Close]

BLAST of Chy1G005560 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.0e-27
Identity = 85/316 (26.90%), Postives = 161/316 (50.95%), Query Frame = 0


Query: 19  KGFDDRSIDT-MFRKCRRLEDMQNERA-SENWEYLERIGIQKRKLPSVVSKCPKILALGL 78
           +G  D + DT   R   R+ ++  E A      YL  +G+   ++ ++  K        L
Sbjct: 169 RGDTDSAADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSL 228

Query: 79  QEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKM 138
             K+ P+VE L  L     +I   + K P I   S+ + L P +AF + LG+ + Q  K+
Sbjct: 229 DGKIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKI 288

Query: 139 ILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVDKRLRPTVEFL 198
           I   P +++Y    KL  TV+FL+  GLT+E  IG++L + P +M YSV+ +LRPT+E+ 
Sbjct: 289 ISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-QIGRILTRCPNIMSYSVEDKLRPTMEYF 348

Query: 199 KSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSLVTGYPPVLIKS 258
           +S+    +D+  +  + P      ++  L+   ++   +GF   EI  +++ Y  +   S
Sbjct: 349 RSL---NVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFS 408

Query: 259 IQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSELLEC 318
           ++ ++ P+  +  + M     E+ ++P FF + L+++++ R+ L++   V   L+++L  
Sbjct: 409 LKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSL 468

Query: 319 N-------QKKFMMKM 326
           +        KK MMK+
Sbjct: 469 SGIEFEKVVKKKMMKL 478

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BLAST of Chy1G005560 vs. ExPASy TrEMBL
Match: A0A0A0K108 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 3.6e-180
Identity = 325/328 (99.09%), Postives = 325/328 (99.09%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           MESSASRNGNCMLWFFRDKGFDDRSID MFRKCRRLEDMQNERASENWEYLERIGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEKQLGKMILLNPRLISY IESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLR NLDYLRSRGFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 329
           LKEKNVDFALSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Chy1G005560 vs. ExPASy TrEMBL
Match: A0A5A7UUK2 (Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00330 PE=3 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.7e-177
Identity = 319/328 (97.26%), Postives = 322/328 (98.17%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           MESSAS+NGNCMLWFFRDKGFDDRSID MFRKCRRLED QNERASENWEYLERIGIQKRK
Sbjct: 8   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 67

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL
Sbjct: 68  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 127

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEK LGKMILLNPRLISY IESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL
Sbjct: 128 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 187

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLR NLDYLRSRGFKDG
Sbjct: 188 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 247

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVS+VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKL+EVAEYPDFFKHGLKKKLELRHRL
Sbjct: 248 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 307

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 329
           LKEKNVDF LSELLECNQKKFMMKMGLL
Sbjct: 308 LKEKNVDFTLSELLECNQKKFMMKMGLL 335

[Close]

BLAST of Chy1G005560 vs. ExPASy TrEMBL
Match: A0A1S3BQA2 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492550 PE=3 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.7e-177
Identity = 319/328 (97.26%), Postives = 322/328 (98.17%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           MESSAS+NGNCMLWFFRDKGFDDRSID MFRKCRRLED QNERASENWEYLERIGIQKRK
Sbjct: 1   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEK LGKMILLNPRLISY IESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLR NLDYLRSRGFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVS+VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKL+EVAEYPDFFKHGLKKKLELRHRL
Sbjct: 241 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 329
           LKEKNVDF LSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFTLSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Chy1G005560 vs. ExPASy TrEMBL
Match: A0A6J1I081 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111468249 PE=3 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 2.0e-162
Identity = 292/328 (89.02%), Postives = 306/328 (93.29%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           ME S SRNG  MLWFFRDKGFDD SID MF+KCRRLE MQNERA+ENWEYLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGLQEK+ PMVECLATL+TKP EIA AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEKQLGKMILLNPRLISY IESKL+ETVDFLAGVGLTKEG+IGKVL KNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           +GYSV KRLRPT EFLKSIGL++MDLQAVALKFPDILCRDVDKVLR NLDYLR RGFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVSLVTGYPP+LIKSIQHSLEPRIRFLVEIMGR L+EVAEYP+FFKHGLKK+LELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 329
           LKEK +DF LSELLECNQKKFMMKM LL
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKMSLL 328

[Close]

BLAST of Chy1G005560 vs. ExPASy TrEMBL
Match: A0A6J1GLD3 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455322 PE=3 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 2.6e-162
Identity = 292/328 (89.02%), Postives = 307/328 (93.60%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           ME S SRNG  MLWFFRDKGFDD SID MF+KCRRLE MQNERA+ENWEYLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGLQEK+ PMVECLATLSTKP EIA AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLSTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEKQLGKMILLNPRLISY IESKL+ETVDFLAGVGLTK+G+IGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKDGMIGKVLAKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           +GYSV KRLRPT EFLKSIGL++MDLQAVALKFPDILCRDVDKVLR NLDYLR RGFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVSLVTGYPP+LIKSIQHSLEPRI+FLVEIM RKL+EVAEYP+FFKHGLKK+LELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIKFLVEIMERKLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 329
           LKEK +DF LSELLECNQKKFMMKM LL
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKMSLL 328

[Close]

BLAST of Chy1G005560 vs. NCBI nr
Match: XP_004144567.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus] >KGN43380.1 hypothetical protein Csa_020537 [Cucumis sativus])

HSP 1 Score: 640 bits (1650), Expect = 3.96e-231
Identity = 325/328 (99.09%), Postives = 325/328 (99.09%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           MESSASRNGNCMLWFFRDKGFDDRSID MFRKCRRLEDMQNERASENWEYLERIGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEKQLGKMILLNPRLISY IESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLR NLDYLRSRGFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328
           LKEKNVDFALSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Chy1G005560 vs. NCBI nr
Match: XP_008451174.1 (PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 631 bits (1627), Expect = 1.27e-227
Identity = 319/328 (97.26%), Postives = 322/328 (98.17%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           MESSAS+NGNCMLWFFRDKGFDDRSID MFRKCRRLED QNERASENWEYLERIGIQKRK
Sbjct: 1   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEK LGKMILLNPRLISY IESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLR NLDYLRSRGFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVS+VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKL+EVAEYPDFFKHGLKKKLELRHRL
Sbjct: 241 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328
           LKEKNVDF LSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFTLSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Chy1G005560 vs. NCBI nr
Match: KAA0059582.1 (transcription termination factor MTERF6 [Cucumis melo var. makuwa] >TYK25788.1 transcription termination factor MTERF6 [Cucumis melo var. makuwa])

HSP 1 Score: 631 bits (1627), Expect = 1.65e-227
Identity = 319/328 (97.26%), Postives = 322/328 (98.17%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           MESSAS+NGNCMLWFFRDKGFDDRSID MFRKCRRLED QNERASENWEYLERIGIQKRK
Sbjct: 8   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 67

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL
Sbjct: 68  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 127

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEK LGKMILLNPRLISY IESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL
Sbjct: 128 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 187

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLR NLDYLRSRGFKDG
Sbjct: 188 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 247

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVS+VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKL+EVAEYPDFFKHGLKKKLELRHRL
Sbjct: 248 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 307

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328
           LKEKNVDF LSELLECNQKKFMMKMGLL
Sbjct: 308 LKEKNVDFTLSELLECNQKKFMMKMGLL 335

[Close]

BLAST of Chy1G005560 vs. NCBI nr
Match: XP_038887558.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 600 bits (1548), Expect = 1.39e-215
Identity = 302/328 (92.07%), Postives = 314/328 (95.73%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           ME SASRNGNCMLWFFRDKGFDDRSID MF++CRRL+DMQ ERASENWEYLERIGIQ+RK
Sbjct: 1   MEVSASRNGNCMLWFFRDKGFDDRSIDKMFKRCRRLKDMQKERASENWEYLERIGIQRRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPS+VSKCPKILALGLQEKLVPMVECLATLSTKP+EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSIVSKCPKILALGLQEKLVPMVECLATLSTKPNEIASAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEK LGKMILLNPRLISY IESKLVETVDF AG GL KEGVIGKVLAKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFFAGFGLMKEGVIGKVLAKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           MGYSVDKRLRPT EFL+SIGLN+MDLQAVALKFPDILCRDVDKVLR NLDYLR  GFKDG
Sbjct: 181 MGYSVDKRLRPTSEFLRSIGLNEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRCGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKL+EVAEYPDFFKHGLKK+LELRHRL
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKRLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328
           LKEK +DF LSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKQMDFTLSELLECNQKKFMMKMGLL 328

[Close]

BLAST of Chy1G005560 vs. NCBI nr
Match: XP_022969173.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 581 bits (1497), Expect = 8.21e-208
Identity = 292/328 (89.02%), Postives = 306/328 (93.29%), Query Frame = 0


Query: 1   MESSASRNGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60
           ME S SRNG  MLWFFRDKGFDD SID MF+KCRRLE MQNERA+ENWEYLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120
           LPSVVSKCPKIL LGLQEK+ PMVECLATL+TKP EIA AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 121 AFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180
           AFFQALGVPEKQLGKMILLNPRLISY IESKL+ETVDFLAGVGLTKEG+IGKVL KNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDG 240
           +GYSV KRLRPT EFLKSIGL++MDLQAVALKFPDILCRDVDKVLR NLDYLR RGFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300
           EIVSLVTGYPP+LIKSIQHSLEPRIRFLVEIMGR L+EVAEYP+FFKHGLKK+LELRHRL
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328
           LKEK +DF LSELLECNQKKFMMKM LL
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKMSLL 328

[Close]

BLAST of Chy1G005560 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 426.8 bits (1096), Expect = 1.6e-119
Identity = 206/321 (64.17%), Postives = 263/321 (81.93%), Query Frame = 0


Query: 8   NGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERI-GIQKRKLPSVVS 67
           N + ++WFFRDKGFDD SID M RKC++LE  Q++ ASENW+YL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL++L   P E+A+AI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVD 187
           GVPE QLGKMIL NPRLISY I++KL   V FLA +GL ++G+IGKVL KNPFLMGYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTVEFLK-SIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSL 247
           KRLRPT EFLK S+GL++  +++V + FP +LCRDV+K+L+ N DYL+  GF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKN 307
           VTGYP +LIKS+++SL+PRIRFLV++MGR ++EVA YP+FF HGLKKK+E R +L+K+ N
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFALSELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Chy1G005560 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 426.8 bits (1096), Expect = 1.6e-119
Identity = 206/321 (64.17%), Postives = 263/321 (81.93%), Query Frame = 0


Query: 8   NGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERI-GIQKRKLPSVVS 67
           N + ++WFFRDKGFDD SID M RKC++LE  Q++ ASENW+YL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL++L   P E+A+AI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVD 187
           GVPE QLGKMIL NPRLISY I++KL   V FLA +GL ++G+IGKVL KNPFLMGYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTVEFLK-SIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSL 247
           KRLRPT EFLK S+GL++  +++V + FP +LCRDV+K+L+ N DYL+  GF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKN 307
           VTGYP +LIKS+++SL+PRIRFLV++MGR ++EVA YP+FF HGLKKK+E R +L+K+ N
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFALSELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Chy1G005560 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 426.8 bits (1096), Expect = 1.6e-119
Identity = 206/321 (64.17%), Postives = 263/321 (81.93%), Query Frame = 0


Query: 8   NGNCMLWFFRDKGFDDRSIDTMFRKCRRLEDMQNERASENWEYLERI-GIQKRKLPSVVS 67
           N + ++WFFRDKGFDD SID M RKC++LE  Q++ ASENW+YL  I GIQ+RKLP +VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 68  KCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLLAFFQAL 127
           +CPKIL L L E+L+PMVECL++L   P E+A+AI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 128 GVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFLMGYSVD 187
           GVPE QLGKMIL NPRLISY I++KL   V FLA +GL ++G+IGKVL KNPFLMGYSVD
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 188 KRLRPTVEFLK-SIGLNKMDLQAVALKFPDILCRDVDKVLRCNLDYLRSRGFKDGEIVSL 247
           KRLRPT EFLK S+GL++  +++V + FP +LCRDV+K+L+ N DYL+  GF D +I ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 248 VTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKN 307
           VTGYP +LIKS+++SL+PRIRFLV++MGR ++EVA YP+FF HGLKKK+E R +L+K+ N
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 308 VDFALSELLECNQKKFMMKMG 327
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of Chy1G005560 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-30
Identity = 80/271 (29.52%), Postives = 145/271 (53.51%), Query Frame = 0


Query: 51  LERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSY 110
           +E++ +  +    ++ K P IL+  +QE    +     + S    +I  AI ++P +L  
Sbjct: 307 MEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGC 366

Query: 111 SVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGVI 170
           S    +  ++  F  LGV +K++GK+I   P+L+      + ++ V FL  +G  KE ++
Sbjct: 367 SA-SNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCK-PQEFLKVVCFLEDLGFQKE-IV 426

Query: 171 GKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRCNLD 230
           G++L + P + G S++K L+  + FL   G++      +  K+P+ L  D DK +   L 
Sbjct: 427 GQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLK 486

Query: 231 YLRSRGFKDGEIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGL 290
           YL   G  + EI  ++  + P+L  SI   L P+  FLV  M + + EV EYP +F + L
Sbjct: 487 YLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSL 546

Query: 291 KKKLELRHRLLKEKNVDFALSELLECNQKKF 322
           +K+++ R R+LK +N++  L E+L  N ++F
Sbjct: 547 EKRIKPRFRVLKGRNIECTLQEMLGKNDEEF 574

[Close]

BLAST of Chy1G005560 vs. TAIR 10
Match: AT2G44020.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-29
Identity = 75/308 (24.35%), Postives = 156/308 (50.65%), Query Frame = 0


Query: 50  YLERIGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILS 109
           YLE+IGI + KL   V   P++L   +  +L P+V+ L  L  +  ++   + K+P +L 
Sbjct: 150 YLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLGYVLMKYPELLG 209

Query: 110 YSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYGIESKLVETVDFLAGVGLTKEGV 169
           + +E  +   +A+  ++GV  + +G M+   P L+   + + +   VD+L  +GL K+ +
Sbjct: 210 FKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKK-I 269

Query: 170 IGKVLAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDIL------------ 229
           + ++L K  +++GY++++ ++P V+ L S G+ K  L  +  ++P IL            
Sbjct: 270 VARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQILGLPVKAKMSTQQ 329

Query: 230 --------------CRDVDK----------VLRCNLDYLRSRGFKDGEIVSLVTGYPPVL 289
                          R V+K          V+   +++L  R F+  +I  +V   P +L
Sbjct: 330 YFFSLKLKIDPEGFARVVEKMPQIVSLKQNVIMKPIEFLLGRAFQVEDIAKMVVRCPQIL 389

Query: 290 IKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRLLKEKNVDFALSEL 322
              ++  ++    F    MGR ++E+ EYP++F + L+ +++ R++ L+ K +  +L+  
Sbjct: 390 CSRVE-LMKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWF 449

The following BLAST results are available for this feature:

BLAST of Chy1G005560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	2.2e-118	64.17	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4IHL3	1.4e-27	25.77	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	1.4e-27	23.00	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
B6TGN4	1.8e-27	22.68	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]
F4JVI3	9.0e-27	26.90	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of Chy1G005560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K108	3.6e-180	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1	[more]
A0A5A7UUK2	1.7e-177	97.26	Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BQA2	1.7e-177	97.26	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucumis ...	[more]
A0A6J1I081	2.0e-162	89.02	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbit...	[more]
A0A6J1GLD3	2.6e-162	89.02	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbit...	[more]

BLAST of Chy1G005560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144567.1	3.96e-231	99.09	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sa...	[more]
XP_008451174.1	1.27e-227	97.26	PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial ...	[more]
KAA0059582.1	1.65e-227	97.26	transcription termination factor MTERF6 [Cucumis melo var. makuwa] >TYK25788.1 t...	[more]
XP_038887558.1	1.39e-215	92.07	transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa ...	[more]
XP_022969173.1	8.21e-208	89.02	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucurbita ...	[more]

BLAST of Chy1G005560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	1.6e-119	64.17	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	1.6e-119	64.17	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	1.6e-119	64.17	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	1.8e-30	29.52	Mitochondrial transcription termination factor family protein	[more]
AT2G44020.1	2.6e-29	24.35	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 134..165 e-value: 0.0046 score: 26.2 coord: 276..307 e-value: 4.1 score: 16.4 coord: 171..202 e-value: 8.9E-8 score: 41.8 coord: 27..57 e-value: 1400.0 score: 2.8 coord: 98..129 e-value: 4.8E-4 score: 29.4 coord: 243..275 e-value: 0.31 score: 20.1 coord: 62..93 e-value: 19.0 score: 14.1 coord: 207..238 e-value: 5.8 score: 15.9
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 119..321 e-value: 6.9E-42 score: 143.5 coord: 12..169 e-value: 1.1E-22 score: 80.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..327
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 95..326 e-value: 4.6E-53 score: 182.1
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 11..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G005560.1	Chy1G005560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding