Chy1G003640 (gene) Cucumber (hystrix) v1

Overview
NameChy1G003640
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 2615179 .. 2616921 (-)
RNA-Seq ExpressionChy1G003640
SyntenyChy1G003640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAATGAGATAATCAGAGCAAAGAAGAAAGAATATGAAATGAGGAGAAGAAATGGAGATTTTGCAGAAGAGGAAGATCGTTTTGCAGAGCAAGGTCTCTTTTAACGTTGCTTTCAAAAAGAAAGGGCTTTTTGTTGGGCTGAGTGATGATGATGATTTTTCTTTAGTAAATATTGAGAAAATCAAAATTATATATAATAAAAATATATACTATACTACTTACTCTCAAAGCTATGTTTATAATATATGTTGATGGAATGAAGTTATGAAGAGAATGTTTAAGATTAAAAAAAAAAGGGTTTGATATTTTGAAGTTTTGATTGAAGTATATATTGTTGAATGAAAAGGATAAAATAAAAACATGTGAATTGATTGGAAATGTCATGCTTAATTGATTACATTGCATTGAGAATTGAAACTTGTTTAATTATTGTATTTTTAAGAATAATTTAGTCACTTAACATGTTGATTATAATCTTTTAAGTTTGCTCTAAGTGATGATGTTCACATTTGACTCTTGCACCATATATTACTTATAATGAGGTTTTGATAATCATTACATTTTAAAACATTATGCTTTTAACCTTCCAACTTTTGGACATGTGAAAATAGTACAAGTATCCTCTTACTAGGTATTAGAAACCTTAATCACCACTTATCTCTACATTGTAACTAGGTAGTTTCGATTTTCGATCTTTTCTTTAGTTAGATTTTAAAATTAGTTTCATAGTTAGACTCTTAGTTCCTACATAATGATAAAATCTCATACATTGTCACTATTGATTTAAATTTATAAAACATAGATAGAAAAGCACATACATCCAAGTATTTTTTCCTTTAGAAAAATGAATAAAACGTTAGTGACACAATTTTTCTTCCTCAACATTATTCATATTAAGAAAAGTACAAACTTTGTCGATGAACATGTTAAAATTTTCTCTTTCTTCTTTAGTTTGCGATCATAGAGATAAAGTTTGAACCGCCAACTTTTTAGATAACACTTGATCCACCGATTATATAAATGTGTCAAAAAACTCAACTTCAACAATGAATACTAATAAAAGTTGCATATTTATAAAAGAAACTTCCCCTATCTTATTTTCTTTTTCTATTTCAAACATAACTCCATCTTGTAGCGTTACATTTTAAACATAAACTTCCTAATTATAAGCCTTTAAAACATAGCACATTGTTCCCCAAACATAAGTTTCAAAAGTTAGGTAAGAATATATGAAGTAATGTTATAATATACCAAACTTTTGAAGTACACATTTTAAAATGTAAACTGTGGAAAGAAAAAAAAAAAAAGTAAAATTTCAATCCCATAATTCCACACAGACACACACACACATTGTGAGCAGTAGTAATACAAAAAAATTCAGAGAGATCTGGTAGAGAGAAATGGGCACGTGCTACCAAACACGTGTAAGCACAGAAATTCGTCGTTCAGTCATTCACGTGGCCTCTGCGAACGACACATCGAAGAGGCCACGTAGGCAACCTCAGGGGGACCACATCGCCAACGTGGGCAGGGAAGTCTCGCCATCTGGCGGTCACACATTGGGGGAGCGGAGGTATGAGTCAGCCGAGGCAGAATCACGAGAAGGAAAAAGGACGGTGGAGATTGATGAGAGGAGGGGAGGTGTTTGGTTGCAGTTAATAATGGTATCCGGGTCGAGGTTGTGGGTCAGAAAAGAGGAGCACGTGGGAAAAGTGGAACCCGATCTGAAAGGTTTATAG

mRNA sequence

ATGTGCAATGAGATAATCAGAGCAAAGAAGAAAGAATATGAAATGAGGAGAAGAAATGGAGATTTTGCAGAAGAGGAAGATCGTTTTGCAGAGCAAGAAATTCGTCGTTCAGTCATTCACGTGGCCTCTGCGAACGACACATCGAAGAGGCCACGTAGGCAACCTCAGGGGGACCACATCGCCAACGTGGGCAGGGAAGTCTCGCCATCTGGCGGTCACACATTGGGGGAGCGGAGGTATGAGTCAGCCGAGGCAGAATCACGAGAAGGAAAAAGGACGGTGGAGATTGATGAGAGGAGGGGAGGTGTTTGGTTGCAGTTAATAATGGTATCCGGGTCGAGGTTGTGGGTCAGAAAAGAGGAGCACGTGGGAAAAGTGGAACCCGATCTGAAAGGTTTATAG

Coding sequence (CDS)

ATGTGCAATGAGATAATCAGAGCAAAGAAGAAAGAATATGAAATGAGGAGAAGAAATGGAGATTTTGCAGAAGAGGAAGATCGTTTTGCAGAGCAAGAAATTCGTCGTTCAGTCATTCACGTGGCCTCTGCGAACGACACATCGAAGAGGCCACGTAGGCAACCTCAGGGGGACCACATCGCCAACGTGGGCAGGGAAGTCTCGCCATCTGGCGGTCACACATTGGGGGAGCGGAGGTATGAGTCAGCCGAGGCAGAATCACGAGAAGGAAAAAGGACGGTGGAGATTGATGAGAGGAGGGGAGGTGTTTGGTTGCAGTTAATAATGGTATCCGGGTCGAGGTTGTGGGTCAGAAAAGAGGAGCACGTGGGAAAAGTGGAACCCGATCTGAAAGGTTTATAG

Protein sequence

MCNEIIRAKKKEYEMRRRNGDFAEEEDRFAEQEIRRSVIHVASANDTSKRPRRQPQGDHIANVGREVSPSGGHTLGERRYESAEAESREGKRTVEIDERRGGVWLQLIMVSGSRLWVRKEEHVGKVEPDLKGL*
Homology
BLAST of Chy1G003640 vs. ExPASy TrEMBL
Match: A0A0A0K3Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047300 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 91/100 (91.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query: 33  EIRRSVIHVASANDTSKRPRRQPQGDHIANVGREVSPSGGHTLGERRYESAEAESREGKR 92
           EIRRSVIHVASANDTSKRPRRQ QGDHIANVG EVSP GG  LGE RYESAEAES EGKR
Sbjct: 12  EIRRSVIHVASANDTSKRPRRQRQGDHIANVGMEVSPCGGVALGEWRYESAEAESGEGKR 71

Query: 93  TVEIDERRGGVWLQLIMVSGSRLWVRKEEHVGKVEPDLKG 133
           TVEIDERRGGVW+QLIMVSGSRLWVRK EHVGKVEPDLKG
Sbjct: 72  TVEIDERRGGVWMQLIMVSGSRLWVRKGEHVGKVEPDLKG 111

BLAST of Chy1G003640 vs. NCBI nr
Match: KAE8645766.1 (hypothetical protein Csa_020171 [Cucumis sativus])

HSP 1 Score: 223 bits (568), Expect = 1.01e-72
Identity = 117/133 (87.97%), Postives = 118/133 (88.72%), Query Frame = 0

Query: 1   MCNEIIRAKKKEYEMRRRNGDFAEEEDRFAEQEIRRSVIHVASANDTSKRPRRQPQGDHI 60
           MCNEIIRAKKKEYEM RRNGDFAEEEDRFAEQ     VIHVASANDTSKRPRRQ QGDHI
Sbjct: 1   MCNEIIRAKKKEYEMGRRNGDFAEEEDRFAEQ-----VIHVASANDTSKRPRRQRQGDHI 60

Query: 61  ANVGREVSPSGGHTLGERRYESAEAESREGKRTVEIDERRGGVWLQLIMVSGSRLWVRKE 120
           ANVG EVSP GG  LGE RYESAEAES EGKRTVEIDERRGGVW+QLIMVSGSRLWVRK 
Sbjct: 61  ANVGMEVSPCGGVALGEWRYESAEAESGEGKRTVEIDERRGGVWMQLIMVSGSRLWVRKG 120

Query: 121 EHVGKVEPDLKGL 133
           EHVGKVEPDLKG 
Sbjct: 121 EHVGKVEPDLKGF 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K3Q51.2e-4191.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8645766.11.01e-7287.97hypothetical protein Csa_020171 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G003640.1Chy1G003640.1mRNA