Chy1G002920 (gene) Cucumber (hystrix) v1

Overview
NameChy1G002920
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
LocationchrH01: 2062451 .. 2063669 (+)
RNA-Seq ExpressionChy1G002920
SyntenyChy1G002920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAATAATTGTAGACCTACTGAAGGTCGAATTGAGGCTGGGGACTGGAGGATTCAATTGCGGCCAGATTCTCGACAACGAATCGTAAACAAAATGTATGATCTCTTACATTTTTCTTGCATCCTGCTCTACTATTATATCTTTTTTAACATGTGCGTTTGAGCTTTTATAGCTCTTTGTTACATAGTTCGTTGGTTAGATTTAGTTACTCGGGAATGGTTTTTTGAATTCTGTTTCTAAAATGTAATTTGTTGAAACTACCCGTTATTGACTTTCCCATTCTTGGATTGAAGATATAGTAGGTTGGGCTTTGTGGGGAGGTTCTTTTTTGATTCTTCAGGTATTTTCCTCTTCTTTAAAAAGAAGAAATGTAAGCTATTTGTAGAGGTGGGGATCTTGCTGAATTTGACTGGGCCATTTTAGAGTACACTCCTCTAAAGTATCTAATATTTTGAATCATGGACATAGAGTGCTATTGTAGTTTTCCTTTCAAGAACAACTTCTCATGCTTTTGCATTTAATATACTAGTTAGCCACTATGCTTTTATCTTTTTATCTTTTTATCTTTTTTTTGTGTTAGAATGGAGACACTGAAGAGGCACCTTCCTGTTTCTGATCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGAAAACGATTTTTACTGCCGCTACCAGTCAGGTATTCTTGATCGCTTTGTTGTTTAAATCAAGAATTGTCATTTATGTTTATCCCATATTCTATTAACAATAAGATACCTGTTTGATTTGCTACCTCAGTTTAGTTGTGTAACAAACGTAATCCTTTTTTTCTTTGGGGCTTGACATTCTTTTTATGTGTGTCCATCTATATTCTTTCATTTCTGTCATCGAAATCTAGGTGTTCTTCCACCAAACACAACTTTGTTTTAGCAATCTCTTGAGTGAGTACTCTCACCAATTTTTTTTTAACCTCTCATTTCAGTCAGATTACCTAAGGAAAATATCTCTGAAGATGCTTACCATGGAAACGAAAATTCAGCCCCTGAGGAATTCATTACCTGTCAATATTGAAAATGAGTTGGGTAATTTTTTTTTTCCAATGTAAGCTTTAATATATCATTGTGTATTATAATTTGTAAATTAATTTGTCGTCTTTTTTTAGGTCTTATAGAATATTCTAGTGAAGATGAAGTATCCACAATAACTTGTGTAGATGGTTGA

mRNA sequence

ATGGATTCAAATAATTGTAGACCTACTGAAGGTCGAATTGAGGCTGGGGACTGGAGGATTCAATTGCGGCCAGATTCTCGACAACGAATCGTAAACAAAATAATGGAGACACTGAAGAGGCACCTTCCTGTTTCTGATCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGAAAACGATTTTTACTGCCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAAGATGCTTACCATGGAAACGAAAATTCAGCCCCTGAGGAATTCATTACCTGTCAATATTGAAAATGAGTTGGGTCTTATAGAATATTCTAGTGAAGATGAAGTATCCACAATAACTTGTGTAGATGGTTGA

Coding sequence (CDS)

ATGGATTCAAATAATTGTAGACCTACTGAAGGTCGAATTGAGGCTGGGGACTGGAGGATTCAATTGCGGCCAGATTCTCGACAACGAATCGTAAACAAAATAATGGAGACACTGAAGAGGCACCTTCCTGTTTCTGATCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGAAAACGATTTTTACTGCCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAAGATGCTTACCATGGAAACGAAAATTCAGCCCCTGAGGAATTCATTACCTGTCAATATTGAAAATGAGTTGGGTCTTATAGAATATTCTAGTGAAGATGAAGTATCCACAATAACTTGTGTAGATGGTTGA

Protein sequence

MDSNNCRPTEGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIAVRFEKTIFTAATSQSDYLRKISLKMLTMETKIQPLRNSLPVNIENELGLIEYSSEDEVSTITCVDG*
Homology
[Close]
BLAST of Chy1G002920 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0 

Query: 1  MDSNNCRPT----EGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKI 60
          MD+NN RP+    E  ++ GDWR QL PDSRQ+IVNKIMETLK+HLP S  EG++ELR+I
Sbjct: 1  MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61 AVRFEKTIFTAATSQSDYLRKISLKMLTMETKIQ 91
          A RFE+ IF+ A +Q+DYLRKIS+KMLTMETK Q
Sbjct: 61 AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQ 94

[Close]
BLAST of Chy1G002920 vs. ExPASy TrEMBL
Match: A0A5D3C6P8 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002870 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.9e-34
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MDSNNCRPTEG---RIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT+G    +EAGDWR QL+PDSR RIVNKIMETLKRHLPVS QEGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LRNSLPVN 100
           VRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + N LP N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]
BLAST of Chy1G002920 vs. ExPASy TrEMBL
Match: A0A1S3C0H1 (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.9e-34
Identity = 83/103 (80.58%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MDSNNCRPTEG---RIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT+G    +EAGDWR QL+PDSR RIVNKIMETLKRHLPVS QEGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LRNSLPVN 100
           VRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + N LP N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]
BLAST of Chy1G002920 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MDSNNCRPTEG---RIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT+G    IEAGDWR QL+PDSRQRIVNKIMETLKRHLPVS  EGLSEL+KIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQ-PLRNSLPVN 100
           VRFE+ I+TAATSQSDYLRKISLKMLTMETK Q P+  SLP N
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of Chy1G002920 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 81/103 (78.64%), Postives = 88/103 (85.44%), Query Frame = 0 

Query: 1   MDSNNCRPTEG---RIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT+G    IE GDWR QL+PDSRQRIVNKIMETLKRHLPVS  EGLSEL+KIA
Sbjct: 1   MDTNNWRPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQ-PLRNSLPVN 100
           VRFE+ I+TAATSQSDYLRKISLKMLTMETK Q P+  SLP N
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of Chy1G002920 vs. ExPASy TrEMBL
Match: A0A6J1JMY4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 0 

Query: 1   MDSNNCRPTEG---RIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MDSNN RP +G    ++AGDWR QL+PDSR RIVNKIMETLKRHLPVS  EGLSELRKIA
Sbjct: 1   MDSNNWRPAQGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQ----PLRNSLPVN 100
           VRFE+ I+ AATSQSDYLRKISLKMLTMETK Q    P  + +P N
Sbjct: 61  VRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTN 106

[Close]
BLAST of Chy1G002920 vs. NCBI nr
Match: XP_031744493.1 (mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sativus] >KGN43730.2 hypothetical protein Csa_017280 [Cucumis sativus])

HSP 1 Score: 195 bits (495), Expect = 8.77e-62
Identity = 105/127 (82.68%), Postives = 110/127 (86.61%), Query Frame = 0 

Query: 1   MDSNNCRPT---EGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT   E  +E  DWR QL+PDSRQRIVNKIMETLKRHLPVS QEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LRNSLPVNIENELGLIEYSSEDEVS 120
           VRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + NSL VNIENELGLIEYS EDE S
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEAS 120

Query: 121 TITCVDG 123
           TITCVDG
Sbjct: 121 TITCVDG 127

[Close]
BLAST of Chy1G002920 vs. NCBI nr
Match: XP_031744494.1 (mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 2.09e-57
Identity = 102/127 (80.31%), Postives = 107/127 (84.25%), Query Frame = 0 

Query: 1   MDSNNCRPT---EGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT   E  +E  DWR QL+PDSRQRIVNKIMETLKRHLPVS QEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LRNSLPVNIENELGLIEYSSEDEVS 120
           VRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + NSL VNIENEL   EYS EDE S
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEL---EYSGEDEAS 120

Query: 121 TITCVDG 123
           TITCVDG
Sbjct: 121 TITCVDG 124

[Close]
BLAST of Chy1G002920 vs. NCBI nr
Match: XP_031744496.1 (mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sativus])

HSP 1 Score: 159 bits (402), Expect = 7.57e-48
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0 

Query: 1   MDSNNCRPT---EGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT   E  +E  DWR QL+PDSRQRIVNKIMETLKRHLPVS QEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LRNSLPVNIENEL 104
           VRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + NSL VNIENE+
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEI 108

[Close]
BLAST of Chy1G002920 vs. NCBI nr
Match: XP_031744495.1 (mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucumis sativus])

HSP 1 Score: 158 bits (400), Expect = 1.68e-47
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0 

Query: 1   MDSNNCRPT---EGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIA 60
           MD+NN RPT   E  +E  DWR QL+PDSRQRIVNKIMETLKRHLPVS QEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LRNSLPVNIENE 103
           VRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + NSL VNIENE
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENE 107

[Close]
BLAST of Chy1G002920 vs. NCBI nr
Match: XP_031744497.1 (mediator of RNA polymerase II transcription subunit 15a isoform X5 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 6.49e-45
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0 

Query: 35  METLKRHLPVSDQEGLSELRKIAVRFEKTIFTAATSQSDYLRKISLKMLTMETKIQP-LR 94
           METLKRHLPVS QEGLSELRKIAVRFE+ IFTAATSQSDYLRKISLKMLTMETK QP + 
Sbjct: 1   METLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMG 60

Query: 95  NSLPVNIENELGLIEYSSEDEVSTITCVDG 123
           NSL VNIENELGLIEYS EDE STITCVDG
Sbjct: 61  NSLLVNIENELGLIEYSGEDEASTITCVDG 90

[Close]
BLAST of Chy1G002920 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-28
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0 

Query: 1  MDSNNCRPT----EGRIEAGDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKI 60
          MD+NN RP+    E  ++ GDWR QL PDSRQ+IVNKIMETLK+HLP S  EG++ELR+I
Sbjct: 1  MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61 AVRFEKTIFTAATSQSDYLRKISLKMLTMETKIQ 91
          A RFE+ IF+ A +Q+DYLRKIS+KMLTMETK Q
Sbjct: 61 AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQ 94

[Close]
BLAST of Chy1G002920 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 8.6e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 0 

Query: 16 GDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIAVRFEKTIFTAATSQSDYL 75
          GDWR Q    SR RIVNKIMET  + LP    EG +ELRKIAVRFE+ +F  A++Q++YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 76 RKISLKMLTMETKIQ 91
          R+I +KML METK Q
Sbjct: 65 RQICMKMLNMETKSQ 79

[Close]
BLAST of Chy1G002920 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 8.6e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 0 

Query: 16 GDWRIQLRPDSRQRIVNKIMETLKRHLPVSDQEGLSELRKIAVRFEKTIFTAATSQSDYL 75
          GDWR Q    SR RIVNKIMET  + LP    EG +ELRKIAVRFE+ +F  A++Q++YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 76 RKISLKMLTMETKIQ 91
          R+I +KML METK Q
Sbjct: 65 RQICMKMLNMETKSQ 79

The following BLAST results are available for this feature:
BLAST of Chy1G002920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I1712.0e-2765.96Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
BLAST of Chy1G002920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C6P83.9e-3480.58Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak... [more]
A0A1S3C0H13.9e-3480.58mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ... [more]
A0A6J1HI151.5e-3379.61mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1HR607.4e-3378.64mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1JMY46.9e-3172.64mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
BLAST of Chy1G002920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031744493.18.77e-6282.68mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sati... [more]
XP_031744494.12.09e-5780.31mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sati... [more]
XP_031744496.17.57e-4880.56mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sati... [more]
XP_031744495.11.68e-4781.31mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucumis sati... [more]
XP_031744497.16.49e-4588.89mediator of RNA polymerase II transcription subunit 15a isoform X5 [Cucumis sati... [more]
BLAST of Chy1G002920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15780.11.4e-2865.96unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.18.6e-1860.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.28.6e-1860.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 15..90
e-value: 1.9E-36
score: 123.9
IPR036529Coactivator CBP, KIX domain superfamilyGENE3D1.10.246.20Coactivator CBP, KIX domaincoord: 17..96
e-value: 7.9E-23
score: 82.4
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILY47040Kix domain of CBP (creb binding protein)coord: 16..90
IPR044661Mediator of RNA polymerase II transcription subunit 15a/b/c-likePANTHERPTHR33137MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR33137:SF27OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATEDcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G002920.1Chy1G002920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003712 transcription coregulator activity