Chy1G002060 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G002060
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Conserved peptide upstream open reading frame 37
Location	chrH01: 1410213 .. 1411204 (-)
RNA-Seq Expression	Chy1G002060
Synteny	Chy1G002060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGCAAGAGGGAGGATATGTTGAGAATTCTCTTCCTTTGTGTCTGATGTTTAGCTCAGAGCTTGAGACTATTCATGTTTCATCTCATATGCTTGGATATAGCTTGCTTCTTGTTTCGTTTTATGTATTTTGAATTTTATTGGTTAGTAATTTTGTGGTGGAGGTTTGATTGCTGAAAACTCTATTGCCGTCTTGCTATTTTGCAGGTAAATTAGGGGAAGTGACTGTAAACAAGTACTGGGGGATAAAAGGAACTATATTGGAACAAAAAATATGCCTTGGTCGAGTTCTACTGTTGATGTGTTTCACAAAGTTGTGCGCCTGAAAATATGCTGTTGGGTTATACTATAAATCATTTCTCATCCCATTGAACCTTTCCTATTTCATTTCTTATCTGCTTCATATCATCTAACCATGGGATCCAATCACTTTTTTATCATTGCTTCTGATATATACATTAGCTGAAGCCAGTTTACCATCTGAATTCTGTCTTAGGCTTTAGTTCTATATTCCAATTTCAGGATTCCAAGCTATTTTTCATCTTAGTTTGCTTAAGATTTTTCAGATTTTCTACTTTTGCTCAGTTCCCCTGTGTTATGTTTGCTGGTTGGTGTACTCTGAACTTTGAAAAACCTACTTGGCCTTTGTTTCATTGTGTGGCCCCTTCCGTCTCACTTCATTTTCATCCTTCATTATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCGAGTCAAACACGATTTCGGGCATTGAAACATGAAAATGGGATTGCTGGGAAGCCAACAATTATTGTTAAAGTGATAGCATGTTTTCAACCTTTGCAGAATTGCCAGGTATCCACGGCTTGGTTTCTAAACCCCATAAATGGTCAATTAATTTTGTTACTGAAGATCATTGACTCCTGGAACTATATGGTTAACCTTCCTGTTTTTTTTTTCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAG

mRNA sequence

ATGGAGGGGCAAGAGGGAGGATATGTTGAGAATTCTCTTCCTTTGTGTCTGATGTTTAGCTCAGAGCTTGAGACTATTCATGTTTCATCTCATATGCTTGGATATAGCTTGCTTCTTGTTTCGTTTTATTTCCCCTGTGTTATGTTTGCTGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCGAGTCAAACACGATTTCGGGCATTGAAACATGAAAATGGGATTGCTGGGAAGCCAACAATTATTGTTAAAGTGATAGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAG

Coding sequence (CDS)

ATGGAGGGGCAAGAGGGAGGATATGTTGAGAATTCTCTTCCTTTGTGTCTGATGTTTAGCTCAGAGCTTGAGACTATTCATGTTTCATCTCATATGCTTGGATATAGCTTGCTTCTTGTTTCGTTTTATTTCCCCTGTGTTATGTTTGCTGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCGAGTCAAACACGATTTCGGGCATTGAAACATGAAAATGGGATTGCTGGGAAGCCAACAATTATTGTTAAAGTGATAGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAG

Protein sequence

MEGQEGGYVENSLPLCLMFSSELETIHVSSHMLGYSLLLVSFYFPCVMFAGLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT*

Homology

[Close]

BLAST of Chy1G002060 vs. ExPASy TrEMBL
Match: A0A0A0K458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Chy1G002060 vs. ExPASy TrEMBL
Match: A0A1S4E0J3 (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Chy1G002060 vs. ExPASy TrEMBL
Match: A0A7J6F895 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_029257 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 51  GLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           G  VVMVCQAASQTRFRALKH NGIAG+PTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 7   GSSVVMVCQAASQTRFRALKHLNGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 64

[Close]

BLAST of Chy1G002060 vs. ExPASy TrEMBL
Match: W9R7U4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           MVCQAASQTRFRALKHENGIAGKPTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Chy1G002060 vs. ExPASy TrEMBL
Match: A0A5A7PUP4 (Conserved peptide upstream open reading frame 37 (Fragment) OS=Striga asiatica OX=4170 GN=STAS_12744 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 53  KVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           KVVMVCQAASQTRFRALKHENGIAG+ TIIV+VIACFQ LQNCQAEYFRHLLKPVT
Sbjct: 81  KVVMVCQAASQTRFRALKHENGIAGRTTIIVRVIACFQSLQNCQAEYFRHLLKPVT 136

[Close]

BLAST of Chy1G002060 vs. NCBI nr
Match: KAE8645821.1 (hypothetical protein Csa_023855, partial [Cucumis sativus])

HSP 1 Score: 124 bits (310), Expect = 9.93e-35
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 51  GLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 108
           GLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 2   GLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 59

[Close]

BLAST of Chy1G002060 vs. NCBI nr
Match: XP_016901746.1 (PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo])

HSP 1 Score: 115 bits (287), Expect = 2.73e-31
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 108
           MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Chy1G002060 vs. NCBI nr
Match: KAG7030896.1 (hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (286), Expect = 4.44e-30
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 53  KVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 108
           +VVMVCQAA+QTRFR LKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 84  EVVMVCQAATQTRFRTLKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 139

[Close]

BLAST of Chy1G002060 vs. NCBI nr
Match: KAG2705007.1 (hypothetical protein I3760_05G032700 [Carya illinoinensis] >KAG6652796.1 hypothetical protein CIPAW_05G031100 [Carya illinoinensis] >KAG6711019.1 hypothetical protein I3842_05G032500 [Carya illinoinensis] >KAG7977413.1 hypothetical protein I3843_05G030300 [Carya illinoinensis])

HSP 1 Score: 112 bits (279), Expect = 4.53e-30
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 108
           MVCQAASQTRFRALKHENGIAGKPTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1   MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Chy1G002060 vs. NCBI nr
Match: KAF4366933.1 (hypothetical protein G4B88_029257 [Cannabis sativa])

HSP 1 Score: 112 bits (280), Expect = 1.20e-29
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 51  GLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 108
           G  VVMVCQAASQTRFRALKH NGIAG+PTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 7   GSSVVMVCQAASQTRFRALKHLNGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 64

[Close]

BLAST of Chy1G002060 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           MVCQ+A QTRFR LKHE+GI G   I+V+VIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1   MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Chy1G002060 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHE-NGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           MV Q+A QTRFR  K+E NG + +PTI+V+VIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1   MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Chy1G002060 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 56  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 109
           MVCQ+  +TRFR LK+E G A + TI+V+VI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1   MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Chy1G002060 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G002060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K458	1.4e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
A0A1S4E0J3	1.4e-22	100.00	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A7J6F895	1.1e-21	89.66	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_029257 PE=4 SV=1	[more]
W9R7U4	1.1e-21	96.23	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]
A0A5A7PUP4	2.0e-21	92.86	Conserved peptide upstream open reading frame 37 (Fragment) OS=Striga asiatica O...	[more]

BLAST of Chy1G002060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645821.1	9.93e-35	100.00	hypothetical protein Csa_023855, partial [Cucumis sativus]	[more]
XP_016901746.1	2.73e-31	100.00	PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo]	[more]
KAG7030896.1	4.44e-30	92.86	hypothetical protein SDJN02_04933, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG2705007.1	4.53e-30	96.23	hypothetical protein I3760_05G032700 [Carya illinoinensis] >KAG6652796.1 hypothe...	[more]
KAF4366933.1	1.20e-29	89.66	hypothetical protein G4B88_029257 [Cannabis sativa]	[more]

BLAST of Chy1G002060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50011.1	2.0e-18	77.36	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	1.3e-17	70.37	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	3.2e-16	66.04	conserved peptide upstream open reading frame 40	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281:SF4	SUBFAMILY NOT NAMED	coord: 56..108
None	No IPR available	PANTHER	PTHR35281	BNAA02G34170D PROTEIN	coord: 56..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G002060.1	Chy1G002060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane