Chy12G220500 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G220500
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	chrH12: 18479892 .. 18482077 (-)
RNA-Seq Expression	Chy12G220500
Synteny	Chy12G220500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACCTCAACCAAGCCAGGTATTCAAATTCTTTCCTATTTCCTCCTCTAACTCTTAATTTGTCTCTACTGGGTGTGTGTGCTATGTTCTTAATCCAAATTCAGATGAAGGACTTTGAAAAATGTTGGTTTTGTTGATGAATATTTGCATAATTCCTGGGTTTGTGGAGATTGAAGCTTTTGGCTCCTTAGAATGAGTATAATTAATATTATTTACCGGGAAAATCTGTGTGTAGAATGATTATTTTCCTGATTGTATGAATTTTATTTTTGTCGTAGAGGAGAATAAAGTGTTACATTTTGAGGGGAGAACTACAAATGGAGCCCAATTGGTGTTTAGGAGAAGATCTGAAGCTTTTTGTTTGTTTGTGTCTGTATTTACGCTGCAGTAGTTTAAAGCTTTCGTGGTTGTTTAGTAAAATATTGTTTGTGGTGGGTGGAAGTATTGATATATTTAAATATATTGTAATTCAAACATGTCAGGAGGTGGTATTTTCAAATCCTGTAGTGTCATTTTTACCAGATAATATGAAGCTGCGATAAAAGGAGCTCCTTATCTATATTTAAGATTGTGAGGTTCCTTGGCATGTTTCCTCAAGATAGTTTCCTCAAGATAGTGCCTCTTTTGGTTCTCCATTTTTGAATCATTTTTTTTAACAAAATATTTGTTTGGGCTTTATGGGATATGTTAACATATTAGATCATATGAAGTTTCGTCTTAAAACCAATAGGTAATGAGAGATTAGAGGAGTAGCTCATCCATCTTGTTAAGATTGTGAGATGGTCGATCTTCTAATATGCTAGTTTCAATATCTGAGGTCTTTTAATTTCTCTAATATATGGATCCTCAACACTTTTATCTCCAATGTTGCATTTTGAGAGATAAAACACTAAAAGGTAAATTATGATAAAGCTTTTCAATTGGAACTTTGAGTAGAAAGACTACTGTCTTTAAAAAAATATTTACTTTTTGCATCAATATAAAGTTGGCAACAAAATTAATCATAAAAAATTATCAACATTTGAGATGAGTCCTTAGCTTGGATAGAATCCTTTGTTAATGAACGTACATGAAAGATTTAGAGGGATTAAGAGGTCAAATCCACGAATTGTTGGCATTCCTCTTACTCTTTGGCTTGTCCTGGGGGCAAAGAGTTGGGATGTTTGGTGATATTCACCAAAGTATTGCTTCGAGTCTGCAGGCAAAGAATTTAATATTAATCCAGCCCATGTTGCATCTAAGACCTAGAAAAGTAAAATGCATTAAATAATTATTTAAATTCAACTGTTTAAGACATATACTCTTAGCTTAGAGGTTAAAGGGTCAAATGCTCGACCCTTCTTATTGTTGACTAGTTTGTGAATCATGCAAATGGATAACCATAAAAGAGGTTCATTGTTAGAACTAAATTTGCAAGGATCTTAGAACCTATTTATATACTCTTCAAAACACCTTTGAATTTGTAATTTGAGATAAATACCAATGGCCTATTTTAAACGTTAATATTCATAATCATGGTACGTGGTTTTACCTGCAAAATTGTGAAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATTTTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTGTTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCAGGCCGTGAATCTGAGTTTGATGTTAGGTACAAAACACTTTTCCTTTTAATGTTTGTCACGTATAAGCAACTAAAGATCTGTATGCATTAGAGAAGGTCTCAACTTCCAAAATTTTTGATCTTCAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATATGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGTGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA

mRNA sequence

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACCTCAACCAAGCCAGGGGATAAATACTGTTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCAGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATATGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGTGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA

Coding sequence (CDS)

ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACCTCAACCAAGCCAGGGGATAAATACTGTTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCAGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATATGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGTGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA

Protein sequence

MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC*

Homology

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BLAST of Chy12G220500 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.9e-62
Identity = 119/160 (74.38%), Postives = 134/160 (83.75%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHK-QCRNRSALMMISV-AELGKGGGLLEKPTI 60
           ME AICGR+ L+P+  F S K GDK+   K  C NRS LM +S  A LGKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K +PPYRV+LHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of Chy12G220500 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 50  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTL 109
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDN+NKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 110 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

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BLAST of Chy12G220500 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 75  RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK +P YRVLLHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGLLSSIEP 154
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of Chy12G220500 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 75  RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 134
           RK +P YRVLLHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 135 AEDHCMQLRGNGL 148
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

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BLAST of Chy12G220500 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 54  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDN 113
           E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 114 AVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 154
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of Chy12G220500 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 4.8e-85
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKY FHKQCRNRSALMMISVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

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BLAST of Chy12G220500 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKY FHKQCRNRSALMMISVAELGKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.5e-81
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPN FF  T+PGDKY FHKQCRNRS LMM+SVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGR+PLSP  FF ST+PGDKY FHKQCRNRS L M+SVAELGKGGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.2e-77
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGR+PLSP  FF ST+PGDKY FHKQCRNRS L M+SVAELGKGGGLLEKP  EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 323 bits (827), Expect = 2.47e-111
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKY FHKQCRNRSALMMISVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 321 bits (822), Expect = 1.43e-110
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPNQFFTSTKPGDKY FHKQCRNRSALMMISVAELGKGGGLLEKP IEK
Sbjct: 1   MEAAICGRVPLSPNQFFTSTKPGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 310 bits (795), Expect = 1.88e-106
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRVPLSPN FF  T+PGDKY FHKQCRNRS LMM+SVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRKSRKT+PPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158
           YNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 310 bits (795), Expect = 1.88e-106
Identity = 150/158 (94.94%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGRV LSPN FF+STKPGDKY FHKQCRNRS LMM+SVAELGKGGGLLEKPTIEK
Sbjct: 1   MEAAICGRVSLSPNHFFSSTKPGDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEFDVRK RKTSPPYRVLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKLRKTSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 297 bits (761), Expect = 2.87e-101
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEK 60
           MEAAICGR+PLSP  FF ST+PGDKY FHKQCRNRS L M+SVAELGKGGGLLEKPT EK
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 61  TTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120
           TTPGRESEF+VRKSRK +PPYRVLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158
           YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of Chy12G220500 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 119/160 (74.38%), Postives = 134/160 (83.75%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHK-QCRNRSALMMISV-AELGKGGGLLEKPTI 60
           ME AICGR+ L+P+  F S K GDK+   K  C NRS LM +S  A LGKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K +PPYRV+LHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
           AH NG+AVVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Chy12G220500 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 171.0 bits (432), Expect = 7.6e-43
Identity = 93/160 (58.13%), Postives = 105/160 (65.62%), Query Frame = 0


Query: 1   MEAAICGRVPLSPNQFFTSTKPGDKYCFHK-QCRNRSALMMISV-AELGKGGGLLEKPTI 60
           ME AICGR+ L+P+  F S K GDK+   K  C NRS LM +S  A LGKGGG+L+KP I
Sbjct: 1   METAICGRLALAPSSLFNS-KSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 61  EKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQE 120
           EKTTPGRESEFD+RKS+K +PPYRV+LHNDNFNKREYVVQVLMK                
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------- 120

Query: 121 AHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 159
                          DAE HCMQLRGNGLLSS+EP   GC
Sbjct: 121 --------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Chy12G220500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	1.9e-62	74.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.5e-22	52.29	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.8e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.3e-15	56.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	7.2e-14	43.14	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Chy12G220500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C561	4.8e-85	99.37	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A0A0LSY6	1.8e-84	98.73	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1C511	2.5e-81	93.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1K0P0	2.1e-77	90.51	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1GS56	8.2e-77	89.87	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of Chy12G220500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456997.1	2.47e-111	99.37	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_004137466.1	1.43e-110	98.73	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022136971.1	1.88e-106	93.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	1.88e-106	94.94	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_022994956.1	2.87e-101	90.51	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Chy12G220500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	1.3e-63	74.38	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	7.6e-43	58.13	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 75..153 e-value: 4.0E-21 score: 76.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 75..152
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 77..144 e-value: 1.7E-18 score: 66.2
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 1..158
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 61..155 score: 14.976843

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G220500.1	Chy12G220500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity