Chy12G215360 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G215360
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA ligase 1
Location	chrH12: 14729338 .. 14731459 (-)
RNA-Seq Expression	Chy12G215360
Synteny	Chy12G215360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACATCAAAATTCCTACTGCTAAAACAAGATCCAGGAAGCGAGTCTCCGACACCGATCTCTCGAGCTCCGATCAAAGGAAGCGAACCAACGATGATATCGACCTTGATCTCGACCTTTCCGAGTACGTATTATTTTTTTGTTTTTTCCATTTCTGTTCCACTTTCCGGTGATGTTTTGGAGTATCTTAACAATGATGTTTACGGTTTGTAGCGATCTTAAAGGAATAGTGTCGGCGTTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCTGAAGAAGAATGAAGAGACGATCTCAAGGTAATTTGAGTGGTTTTGTTCGATCGGTACTTTTATTGACTGGAGTCTGGAGCTGCTGAAATTTTGTGTTCTTGTATATTTATTTCCGATTCTCGAATTTCTGTGTACGGCTGCTCATTTGTACCTTCGTTTTTCTTCTTCTGGTAGAATTGACCTGGCCTCGCTCGTAGTTTGGTTTTATGATTTGTTTGATGTGATTCATTATAAACTTGAAATGATAGCCTGTTCAAACTTAGTTTACTGGATCAGACTTGCTTCGTCTCACCGTTTCTGTCAAAACATTTTACCGTTTTCCAACTTCAATCCATGCCGCTTTTTATTGACTGAGGAGTTCATTTATTTTCTGAGCCGATACTCTCCTTCTTGTCTCGCACTAGAACAATGTTTTGAATGTTATTTTCATGTTATTGACAGTGTTGCGACTGAGATGAGAACAATGATTGAAGAAGTGAAATCTAAACTTGAGAAGGACAGGTAGATTTTAGAGCTATACAGAGAGTTCAGATGTTGCTCTTGCTTCAATTTTTGGTTGAATTAGTTATAAACGAATGAATGCAATTTAATTCCTCCAACCAATATCAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGGTTGGTGGATAACCTCGACTTGAATTAGAGGCCATTCAAGCGCAAATTTGAAGTCATTATATCTCGTTTCTAGTTACATTCCATTAATGCATTTTCCATATGTTGTGTTAAAATCAATACGGCTTCTTTATAGTGCGAAAACTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTTCAGGCCATAAAAGGTAACATCCCTTCGAGTATTATTGTCAGAAATATGCATTATTTAATATTAACTACTGTTTTGACTAATTTTCATTTTATTTATAAAATATAAACCGGAGCAAGACCTTTATCATGAGTGAATCCTTACCATGCTTTATAATTTTCCAAGATCGCATTTATGAAGTTAGGTTTCATTCCATAGCATAGAAGAATCGTCAATCTTTGAGAGACTGATATAGTTGGTGAGTGGCAATTGAAGCTTTGACCATGGAATTAGGTCCTCAACTACAATATGTGTGTTCCATCGATATTAGTTGCTTTGCCTTTTGGAATCCTTACTAAATGTGTATGATATATTGGTATTGAAGAACCATTCCTTATTTGGTTGAAAATTTCAAGTTAATTTCATTTAACTACTACCAATCTATCAGATATTCTGGTATATTCATTATTCACTATAAGCCTATAATCTCAAACCCTTGGAAGCTCTAAGAAAAGCCTCCCATTTCTTCTTCAAGGTGGTTCTTTAAATATATTTTCCTAATTCAAGATACTGTTTGGCTTTGGCAGATACCATTTCAAAATTTGAAGAGGAGAAAGAAAGGCTGTTCGCGAAATATGAACAACTGAGTAAGCAAGAAGTCATTGATCAATCAGCTCAAAACGTTTTATGATTATTATCCAATTCCCTTCGTATTTGTAACAGGAAAGAGAGAAAGGAGCTTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAAGAGTCTTTGAAAAGGAAAAAGCAGGTATAGTACGACTTGTAATTCATAAAATCAGAACTCAACCAAACGCCTTCCACCTTTATTCTAATGGAAATTTTAATTAAACACGTGGATTTGGAACATAGGATGACAAGACTTTCAGCCTTTTGAGGAAGACTCTTGGTTCATTTCTTGACACTGGCTCAGATGAGGACTTCCCAGCTGATGATTGA

mRNA sequence

ATGGGGAACATCAAAATTCCTACTGCTAAAACAAGATCCAGGAAGCGAGTCTCCGACACCGATCTCTCGAGCTCCGATCAAAGGAAGCGAACCAACGATGATATCGACCTTGATCTCGACCTTTCCGACGATCTTAAAGGAATAGTGTCGGCGTTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCTGAAGAAGAATGAAGAGACGATCTCAAGTGTTGCGACTGAGATGAGAACAATGATTGAAGAAGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGCGAAAACTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTTCAGGCCATAAAAGATACCATTTCAAAATTTGAAGAGGAGAAAGAAAGGCTGTTCGCGAAATATGAACAACTGAGAAAGAGAGAAAGGAGCTTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAAGAGTCTTTGAAAAGGAAAAAGCAGGATGACAAGACTTTCAGCCTTTTGAGGAAGACTCTTGGTTCATTTCTTGACACTGGCTCAGATGAGGACTTCCCAGCTGATGATTGA

Coding sequence (CDS)

ATGGGGAACATCAAAATTCCTACTGCTAAAACAAGATCCAGGAAGCGAGTCTCCGACACCGATCTCTCGAGCTCCGATCAAAGGAAGCGAACCAACGATGATATCGACCTTGATCTCGACCTTTCCGACGATCTTAAAGGAATAGTGTCGGCGTTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCTGAAGAAGAATGAAGAGACGATCTCAAGTGTTGCGACTGAGATGAGAACAATGATTGAAGAAGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGCGAAAACTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTTCAGGCCATAAAAGATACCATTTCAAAATTTGAAGAGGAGAAAGAAAGGCTGTTCGCGAAATATGAACAACTGAGAAAGAGAGAAAGGAGCTTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAAGAGTCTTTGAAAAGGAAAAAGCAGGATGACAAGACTTTCAGCCTTTTGAGGAAGACTCTTGGTTCATTTCTTGACACTGGCTCAGATGAGGACTTCCCAGCTGATGATTGA

Protein sequence

MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD*

Homology

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BLAST of Chy12G215360 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGNIKIPTAKTRSRKRVSDTDLSSSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Chy12G215360 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.8e-104
Identity = 212/216 (98.15%), Postives = 214/216 (99.07%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Chy12G215360 vs. ExPASy TrEMBL
Match: A0A1S3B5C2 (DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.8e-104
Identity = 212/216 (98.15%), Postives = 214/216 (99.07%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 217
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Chy12G215360 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.9e-98
Identity = 199/216 (92.13%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP AKTR+RKRVSD DL+SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 217
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Chy12G215360 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.7e-98
Identity = 199/216 (92.13%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP AKTR+RKRVSD+DL+SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 217
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDF ADD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

[Close]

BLAST of Chy12G215360 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 390 bits (1001), Expect = 5.97e-136
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGNIKIPTAKTRSRKRVSDTDLSSSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Chy12G215360 vs. NCBI nr
Match: XP_008442500.1 (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa] >TYK26414.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 383 bits (983), Expect = 3.31e-133
Identity = 212/216 (98.15%), Postives = 214/216 (99.07%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           M NIKIPTAKTRSRKRVSDTDL+SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Chy12G215360 vs. NCBI nr
Match: XP_038895277.1 (DNA ligase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 372 bits (956), Expect = 4.31e-129
Identity = 204/216 (94.44%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+K PT K R RKRVSDTDL+SSDQRKRTNDD+DLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNMKTPTTKARVRKRVSDTDLTSSDQRKRTNDDLDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSVATEMRTMIE+VKSKLEKDRQNFAKALSKSSKECENCLKDETAKF+A
Sbjct: 61  KDDQKKNEETISSVATEMRTMIEQVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFRA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLF KYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFVKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 216

[Close]

BLAST of Chy12G215360 vs. NCBI nr
Match: XP_011653172.1 (DNA ligase 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 369 bits (948), Expect = 5.77e-128
Identity = 209/216 (96.76%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGNIKIPTAKTRSRKRVSDTDLSSSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKE      DETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKE------DETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 210

[Close]

BLAST of Chy12G215360 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 363 bits (932), Expect = 1.96e-125
Identity = 199/216 (92.13%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60
           MGN+KIP AKTR+RKRVSD DL+SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120
           KDD KKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216
           ESLKRKKQDD+TFSLLRKTLGSFL+TGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Chy12G215360 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 238.0 bits (606), Expect = 6.9e-63
Identity = 124/182 (68.13%), Postives = 160/182 (87.91%), Query Frame = 0


Query: 36  DLDLDLSDDLKGIVSALNQIKERAHKDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQN 95
           +LD+D+S D KGI+SAL Q +E+AH+D  KK EE+ISSV+TE+++ I+E+KSKLEK+RQN
Sbjct: 31  ELDVDVSSDFKGIMSALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKERQN 90

Query: 96  FAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYE 155
           F+KALSKSSKECEN LKDE AKF+ L++KF K+KA HLQ +KDTISKFEE+KERL+ +YE
Sbjct: 91  FSKALSKSSKECENILKDEAAKFEELHKKFVKDKADHLQGLKDTISKFEEDKERLYMRYE 150

Query: 156 QLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLDT-GSDEDFPA 215
           QLRK+E+++I+EQEK C EK+AQLEESLK+KK+ DKTFS+LRKTLGSFL+   SDE+FP 
Sbjct: 151 QLRKKEKTMITEQEKFCTEKLAQLEESLKKKKRGDKTFSILRKTLGSFLENEASDEEFPP 210

Query: 216 DD 217
           D+
Sbjct: 211 DE 212

The following BLAST results are available for this feature:

BLAST of Chy12G215360 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G215360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRW7	3.9e-106	99.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1	[more]
A0A5D3DS94	4.8e-104	98.15	DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5C2	4.8e-104	98.15	DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1	[more]
A0A6J1KJH3	3.9e-98	92.13	DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1	[more]
A0A6J1EL64	6.7e-98	92.13	DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1	[more]

BLAST of Chy12G215360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146600.1	5.97e-136	99.54	DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X...	[more]
XP_008442500.1	3.31e-133	98.15	PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 iso...	[more]
XP_038895277.1	4.31e-129	94.44	DNA ligase 1 isoform X1 [Benincasa hispida]	[more]
XP_011653172.1	5.77e-128	96.76	DNA ligase 1 isoform X2 [Cucumis sativus]	[more]
XP_023001751.1	1.96e-125	92.13	DNA ligase 1 [Cucurbita maxima]	[more]

BLAST of Chy12G215360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33793.1	6.9e-63	68.13	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..189
None	No IPR available	COILS	Coil	Coil	coord: 133..167
None	No IPR available	COILS	Coil	Coil	coord: 75..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..30
None	No IPR available	PANTHER	PTHR35295:SF1	DNA LIGASE-LIKE PROTEIN	coord: 9..216
None	No IPR available	PANTHER	PTHR35295	DNA LIGASE-LIKE PROTEIN	coord: 9..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G215360.1	Chy12G215360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0099086	synaptonemal structure
molecular_function	GO:0016874	ligase activity